Validation of eDNA Surveillance Sensitivity for Detection of Asian Carps in Controlled and Field Experiments
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{"title"=>"Validation of eDNA Surveillance Sensitivity for Detection of Asian Carps in Controlled and Field Experiments", "type"=>"journal", "authors"=>[{"first_name"=>"Andrew R.", "last_name"=>"Mahon", "scopus_author_id"=>"7005243200"}, {"first_name"=>"Christopher L.", "last_name"=>"Jerde", "scopus_author_id"=>"8574691500"}, {"first_name"=>"Matthew", "last_name"=>"Galaska", "scopus_author_id"=>"55615218000"}, {"first_name"=>"Jennifer L.", "last_name"=>"Bergner", "scopus_author_id"=>"35726604500"}, {"first_name"=>"W. Lindsay", "last_name"=>"Chadderton", "scopus_author_id"=>"6602894540"}, {"first_name"=>"David M.", "last_name"=>"Lodge", "scopus_author_id"=>"7101657153"}, {"first_name"=>"Margaret E.", "last_name"=>"Hunter", "scopus_author_id"=>"55274428600"}, {"first_name"=>"Leo G.", "last_name"=>"Nico", "scopus_author_id"=>"6602358747"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pui"=>"368465598", "sgr"=>"84874628573", "doi"=>"10.1371/journal.pone.0058316", "scopus"=>"2-s2.0-84874628573", "pmid"=>"23472178"}, "id"=>"669680fa-5349-3218-95e2-36a1842c23f5", "abstract"=>"In many North American rivers, populations of multiple species of non-native cyprinid fishes are present, including black carp (Mylpharyngodon piceus), grass carp (Ctenopharyngodon idella), bighead carp (Hypophthalmichthys nobilis), silver carp (Hypophthalmichthys molitrix), common carp (Cyprinus carpio), and goldfish (Carassius auratus). All six of these species are found in the Mississippi River basin and tracking their invasion has proven difficult, particularly where abundance is low. Knowledge of the location of the invasion front is valuable to natural resource managers because future ecological and economic damages can be most effectively prevented when populations are low. To test the accuracy of environmental DNA (eDNA) as an early indicator of species occurrence and relative abundance, we applied eDNA technology to the six non-native cyprinid species putatively present in a 2.6 river mile stretch of the Chicago (IL, USA) canal system that was subsequently treated with piscicide. The proportion of water samples yielding positive detections increased with relative abundance of the six species, as indicated by the number of carcasses recovered after poisoning. New markers for black carp, grass carp, and a common carp/goldfish are reported and details of the marker testing to ensure specificity are provided.", "link"=>"http://www.mendeley.com/research/validation-edna-surveillance-sensitivity-detection-asian-carps-controlled-field-experiments", "reader_count"=>212, "reader_count_by_academic_status"=>{"Unspecified"=>6, "Professor > Associate Professor"=>7, "Researcher"=>41, "Student > Doctoral Student"=>7, "Student > Ph. D. Student"=>32, "Student > Postgraduate"=>8, "Other"=>11, "Student > Master"=>47, "Student > Bachelor"=>40, "Lecturer"=>3, "Lecturer > Senior Lecturer"=>2, "Professor"=>8}, "reader_count_by_user_role"=>{"Unspecified"=>6, "Professor > Associate Professor"=>7, "Researcher"=>41, "Student > Doctoral Student"=>7, "Student > Ph. D. Student"=>32, "Student > Postgraduate"=>8, "Other"=>11, "Student > Master"=>47, "Student > Bachelor"=>40, "Lecturer"=>3, "Lecturer > Senior Lecturer"=>2, "Professor"=>8}, "reader_count_by_subject_area"=>{"Engineering"=>5, "Unspecified"=>11, "Environmental Science"=>34, "Biochemistry, Genetics and Molecular Biology"=>16, "Agricultural and Biological Sciences"=>136, "Medicine and Dentistry"=>3, "Pharmacology, Toxicology and Pharmaceutical Science"=>1, "Physics and Astronomy"=>2, "Computer Science"=>1, "Immunology and Microbiology"=>1, "Earth and Planetary Sciences"=>2}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>5}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>3}, "Physics and Astronomy"=>{"Physics and Astronomy"=>2}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>2}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>136}, "Computer Science"=>{"Computer Science"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>16}, "Unspecified"=>{"Unspecified"=>11}, "Environmental Science"=>{"Environmental Science"=>34}, "Pharmacology, Toxicology and Pharmaceutical Science"=>{"Pharmacology, Toxicology and Pharmaceutical Science"=>1}}, "reader_count_by_country"=>{"Netherlands"=>1, "Hungary"=>1, "United States"=>8, "Uruguay"=>1, "Ireland"=>1, "Brazil"=>3, "United Kingdom"=>3, "Australia"=>2, "France"=>1, "Germany"=>1}, "group_count"=>15}

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  • {"files"=>["https://ndownloader.figshare.com/files/977555"], "description"=>"<p>Prior to the piscicide treatment, all species except black carp were detected in the treatment reach.</p>", "links"=>[], "tags"=>["trends", "carp", "calumet", "treated"], "article_id"=>644742, "categories"=>["Inorganic Chemistry"], "users"=>["Andrew R. Mahon", "Christopher L. Jerde", "Matthew Galaska", "Jennifer L. Bergner", "W. Lindsay Chadderton", "David M. Lodge", "Margaret E. Hunter", "Leo G. Nico"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0058316.g002", "stats"=>{"downloads"=>2, "page_views"=>34, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Detection_trends_of_bighead_silver_grass_and_goldfish_common_carp_in_the_Little_Calumet_River_in_the_zone_treated_with_piscicide_/644742", "title"=>"Detection trends of bighead, silver, grass, and goldfish/common carp in the Little Calumet River, in the zone treated with piscicide.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-03-06 08:51:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/977552"], "description"=>"<p>All field samples reported in this study came from the Little Calumet River at the base of O’Brien Lock. In June of 2010, a bighead carp was recovered from Lake Calumet by the Illinois DNR.</p>", "links"=>[], "tags"=>["waterway"], "article_id"=>644740, "categories"=>["Inorganic Chemistry"], "users"=>["Andrew R. Mahon", "Christopher L. Jerde", "Matthew Galaska", "Jennifer L. Bergner", "W. Lindsay Chadderton", "David M. Lodge", "Margaret E. Hunter", "Leo G. Nico"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0058316.g001", "stats"=>{"downloads"=>7, "page_views"=>124, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Chicago_area_waterway_system_/644740", "title"=>"Chicago area waterway system.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-03-06 08:51:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/1011667"], "description"=>"<p>Results are listed for each sample (number positive water samples out of total water samples). Each test (PCR screening) was replicated 8 times on each water sample; the result was counted as positive for the water sample if at least one of the 8 replicate PCR tests was positive.</p>", "links"=>[], "tags"=>["species-specific", "primers", "amplification", "captive", "carp", "dna", "flow-through"], "article_id"=>672070, "categories"=>["Inorganic Chemistry"], "users"=>["Andrew R. Mahon", "Christopher L. Jerde", "Matthew Galaska", "Jennifer L. Bergner", "W. Lindsay Chadderton", "David M. Lodge", "Margaret E. Hunter", "Leo G. Nico"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0058316.t001", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Screening_of_the_species_specific_primers_for_amplification_of_captive_black_carp_and_grass_carp_environmental_DNA_in_large_flow_through_tanks_/672070", "title"=>"Screening of the species-specific primers for amplification of captive black carp and grass carp environmental DNA in large, flow-through tanks.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-03-05 00:34:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/1011690"], "description"=>"<p>Additionally, the universal amplification marker for common carp and goldfish are included in this table.</p>", "links"=>[], "tags"=>["pcr", "primer", "sequences", "designed", "fragments", "mitochondrial", "dna", "carp"], "article_id"=>672097, "categories"=>["Inorganic Chemistry"], "users"=>["Andrew R. Mahon", "Christopher L. Jerde", "Matthew Galaska", "Jennifer L. Bergner", "W. Lindsay Chadderton", "David M. Lodge", "Margaret E. Hunter", "Leo G. Nico"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0058316.t002", "stats"=>{"downloads"=>0, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Species_specific_PCR_primer_sequences_designed_to_amplify_short_fragments_of_mitochondrial_DNA_of_black_carp_and_grass_carp_respectively_for_this_investigation_/672097", "title"=>"Species-specific PCR primer sequences designed to amplify short fragments of mitochondrial DNA of black carp and grass carp, respectively, for this investigation.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-03-05 00:34:57"}

PMC Usage Stats | Further Information

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  • {"unique-ip"=>"19", "full-text"=>"21", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"9"}
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  • {"unique-ip"=>"46", "full-text"=>"54", "pdf"=>"12", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"4"}
  • {"unique-ip"=>"35", "full-text"=>"42", "pdf"=>"11", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"5"}
  • {"unique-ip"=>"19", "full-text"=>"20", "pdf"=>"5", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"6"}
  • {"unique-ip"=>"6", "full-text"=>"5", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"7"}
  • {"unique-ip"=>"6", "full-text"=>"8", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"8"}

Relative Metric

{"start_date"=>"2013-01-01T00:00:00Z", "end_date"=>"2013-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences/Molecular biology", "average_usage"=>[272, 466, 589, 702, 806, 903, 995, 1086, 1176, 1258, 1347, 1422, 1493]}, {"subject_area"=>"/Earth sciences/Hydrology", "average_usage"=>[253, 387, 495, 587, 670, 757, 847, 930, 1011, 1082, 1167, 1237, 1309]}, {"subject_area"=>"/Earth sciences/Marine and aquatic sciences", "average_usage"=>[299, 492, 619, 718, 826, 932, 1037, 1143, 1246, 1333, 1414, 1517, 1575]}, {"subject_area"=>"/Ecology and environmental sciences", "average_usage"=>[284, 475, 603, 722, 826, 928, 1026, 1129, 1225, 1310, 1390, 1468, 1549]}, {"subject_area"=>"/Ecology and environmental sciences/Aquatic environments", "average_usage"=>[276, 480, 624, 713, 810, 927, 1024, 1130, 1221, 1318, 1422, 1506, 1587]}]}
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