The Structure of Microbial Community and Degradation of Diatoms in the Deep Near-Bottom Layer of Lake Baikal
Publication Date
April 01, 2013
Journal
PLOS ONE
Authors
Yulia R. Zakharova, Yuri P. Galachyants, Maria I. Kurilkina, Alexander V. Likhoshvay, et al
Volume
8
Issue
4
Pages
e59977
DOI
https://dx.plos.org/10.1371/journal.pone.0059977
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0059977
PubMed
http://www.ncbi.nlm.nih.gov/pubmed/23560063
PubMed Central
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3613400
Europe PMC
http://europepmc.org/abstract/MED/23560063
Web of Science
000316930900038
Scopus
84875666502
Mendeley
http://www.mendeley.com/research/structure-microbial-community-degradation-diatoms-deep-nearbottom-layer-lake-baikal
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Mendeley | Further Information

{"title"=>"The Structure of Microbial Community and Degradation of Diatoms in the Deep Near-Bottom Layer of Lake Baikal", "type"=>"journal", "authors"=>[{"first_name"=>"Yulia R.", "last_name"=>"Zakharova", "scopus_author_id"=>"16432987300"}, {"first_name"=>"Yuri P.", "last_name"=>"Galachyants", "scopus_author_id"=>"16303548400"}, {"first_name"=>"Maria I.", "last_name"=>"Kurilkina", "scopus_author_id"=>"55918047300"}, {"first_name"=>"Alexander V.", "last_name"=>"Likhoshvay", "scopus_author_id"=>"55561015900"}, {"first_name"=>"Darya P.", "last_name"=>"Petrova", "scopus_author_id"=>"8217211300"}, {"first_name"=>"Sergey M.", "last_name"=>"Shishlyannikov", "scopus_author_id"=>"6507119032"}, {"first_name"=>"Nikolai V.", "last_name"=>"Ravin", "scopus_author_id"=>"6701534567"}, {"first_name"=>"Andrey V.", "last_name"=>"Mardanov", "scopus_author_id"=>"6603650083"}, {"first_name"=>"Alexey V.", "last_name"=>"Beletsky", "scopus_author_id"=>"6603472192"}, {"first_name"=>"Yelena V.", "last_name"=>"Likhoshway", "scopus_author_id"=>"35610046600"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "scopus"=>"2-s2.0-84875666502", "pui"=>"368634667", "doi"=>"10.1371/journal.pone.0059977", "isbn"=>"1932-6203", "sgr"=>"84875666502", "pmid"=>"23560063"}, "id"=>"a2e60dee-4daa-3c9f-824e-7cb431c36b62", "abstract"=>"Insight into the role of bacteria in degradation of diatoms is important for understanding the factors and components of silica turnover in aquatic ecosystems. Using microscopic methods, it has been shown that the degree of diatom preservation and the numbers of diatom-associated bacteria in the surface layer of bottom sediments decrease with depth; in the near-bottom water layer, the majority of bacteria are associated with diatom cells, being located either on the cell surface or within the cell. The structure of microbial community in the near-bottom water layer has been characterized by pyrosequencing of the 16S rRNA gene, which has revealed 149 208 unique sequences. According to the results of metagenomic analysis, the community is dominated by representatives of Proteobacteria (41.9%), Actinobacteria (16%); then follow Acidobacteria (6.9%), Cyanobacteria (5%), Bacteroidetes (4.7%), Firmicutes (2.8%), Nitrospira (1.6%), and Verrucomicrobia (1%); other phylotypes account for less than 1% each. For 18.7% of the sequences, taxonomic identification has been possible only to the Bacteria domain level. Many bacteria identified to the genus level have close relatives occurring in other aquatic ecosystems and soils. The metagenome of the bacterial community from the near-bottom water layer also contains 16S rRNA gene sequences found in previously isolated bacterial strains possessing hydrolytic enzyme activity. These data show that potential degraders of diatoms occur among the vast variety of microorganisms in the near-bottom water of Lake Baikal.", "link"=>"http://www.mendeley.com/research/structure-microbial-community-degradation-diatoms-deep-nearbottom-layer-lake-baikal", "reader_count"=>40, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>1, "Researcher"=>10, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>12, "Student > Master"=>7, "Student > Bachelor"=>7}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>1, "Researcher"=>10, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>12, "Student > Master"=>7, "Student > Bachelor"=>7}, "reader_count_by_subject_area"=>{"Engineering"=>2, "Unspecified"=>1, "Environmental Science"=>6, "Biochemistry, Genetics and Molecular Biology"=>3, "Agricultural and Biological Sciences"=>25, "Immunology and Microbiology"=>1, "Earth and Planetary Sciences"=>2}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>2}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>2}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>25}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>6}}, "reader_count_by_country"=>{"United States"=>2, "Japan"=>1, "United Kingdom"=>2, "Portugal"=>1, "India"=>1}, "group_count"=>0}

Scopus | Further Information

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Figshare

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  • {"files"=>["https://ndownloader.figshare.com/files/1013790"], "description"=>"<p>The bacteria from the GenBank database most closely related, according to 16S rRNA gene sequences identified from deep near-bottom layer of Lake Baikal.</p>", "links"=>[], "tags"=>["genbank", "16s", "rrna", "sequences", "near-bottom"], "article_id"=>674194, "categories"=>["Molecular Biology", "Biological Sciences", "Microbiology"], "users"=>["Yulia R. Zakharova", "Yuri P. Galachyants", "Maria I. Kurilkina", "Alexander V. Likhoshvay", "Darya P. Petrova", "Sergey M. Shishlyannikov", "Nikolai V. Ravin", "Andrey V. Mardanov", "Alexey V. Beletsky", "Yelena V. Likhoshway"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0059977.t003", "stats"=>{"downloads"=>12, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_bacteria_from_the_GenBank_database_most_closely_related_according_to_16S_rRNA_gene_sequences_identified_from_deep_near_bottom_layer_of_Lake_Baikal_/674194", "title"=>"The bacteria from the GenBank database most closely related, according to 16S rRNA gene sequences identified from deep near-bottom layer of Lake Baikal.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-04-01 01:09:54"}

PMC Usage Stats | Further Information

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Relative Metric

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