Complete Genome Sequence of the Cystic Fibrosis Pathogen Achromobacter xylosoxidans NH44784-1996 Complies with Important Pathogenic Phenotypes
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{"title"=>"Complete Genome Sequence of the Cystic Fibrosis Pathogen Achromobacter xylosoxidans NH44784-1996 Complies with Important Pathogenic Phenotypes", "type"=>"journal", "authors"=>[{"first_name"=>"Tim Holm", "last_name"=>"Jakobsen", "scopus_author_id"=>"26646488200"}, {"first_name"=>"Martin Asser", "last_name"=>"Hansen", "scopus_author_id"=>"57195256357"}, {"first_name"=>"Peter Østrup", "last_name"=>"Jensen", "scopus_author_id"=>"14525265100"}, {"first_name"=>"Lars", "last_name"=>"Hansen", "scopus_author_id"=>"35465103700"}, {"first_name"=>"Leise", "last_name"=>"Riber", "scopus_author_id"=>"15220785800"}, {"first_name"=>"April", "last_name"=>"Cockburn", "scopus_author_id"=>"55803390200"}, {"first_name"=>"Mette", "last_name"=>"Kolpen", "scopus_author_id"=>"35995699300"}, {"first_name"=>"Christine", "last_name"=>"Rønne Hansen", "scopus_author_id"=>"15078444800"}, {"first_name"=>"Winnie", "last_name"=>"Ridderberg", "scopus_author_id"=>"36091718800"}, {"first_name"=>"Steffen", "last_name"=>"Eickhardt", "scopus_author_id"=>"55500401600"}, {"first_name"=>"Marlene", "last_name"=>"Hansen", "scopus_author_id"=>"55432337700"}, {"first_name"=>"Peter", "last_name"=>"Kerpedjiev", "scopus_author_id"=>"55802490200"}, {"first_name"=>"Morten", "last_name"=>"Alhede", "scopus_author_id"=>"15755128600"}, {"first_name"=>"Klaus", "last_name"=>"Qvortrup", "scopus_author_id"=>"55210215600"}, {"first_name"=>"Mette", "last_name"=>"Burmølle", "scopus_author_id"=>"7801532319"}, {"first_name"=>"Claus", "last_name"=>"Moser", "scopus_author_id"=>"7102765327"}, {"first_name"=>"Michael", "last_name"=>"Kühl", "scopus_author_id"=>"7103086849"}, {"first_name"=>"Oana", "last_name"=>"Ciofu", "scopus_author_id"=>"6603713801"}, {"first_name"=>"Michael", "last_name"=>"Givskov", "scopus_author_id"=>"19334462000"}, {"first_name"=>"Søren J.", "last_name"=>"Sørensen", "scopus_author_id"=>"35592902600"}, {"first_name"=>"Niels", "last_name"=>"Høiby", "scopus_author_id"=>"35478208900"}, {"first_name"=>"Thomas", "last_name"=>"Bjarnsholt", "scopus_author_id"=>"8570536600"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"doi"=>"10.1371/journal.pone.0068484", "sgr"=>"84880658082", "pui"=>"369412112", "scopus"=>"2-s2.0-84880658082", "issn"=>"19326203", "pmid"=>"23894309", "isbn"=>"1932-6203"}, "id"=>"adc4d063-1217-347a-9c65-309cdd4734f4", "abstract"=>"Achromobacter xylosoxidans is an environmental opportunistic pathogen, which infects an increasing number of immunocompromised patients. In this study we combined genomic analysis of a clinical isolated A. xylosoxidans strain with phenotypic investigations of its important pathogenic features. We present a complete assembly of the genome of A. xylosoxidans NH44784-1996, an isolate from a cystic fibrosis patient obtained in 1996. The genome of A. xylosoxidans NH44784-1996 contains approximately 7 million base pairs with 6390 potential protein-coding sequences. We identified several features that render it an opportunistic human pathogen, We found genes involved in anaerobic growth and the pgaABCD operon encoding the biofilm adhesin poly-β-1,6-N-acetyl-D-glucosamin. Furthermore, the genome contains a range of antibiotic resistance genes coding efflux pump systems and antibiotic modifying enzymes. In vitro studies of A. xylosoxidans NH44784-1996 confirmed the genomic evidence for its ability to form biofilms, anaerobic growth via denitrification, and resistance to a broad range of antibiotics. Our investigation enables further studies of the functionality of important identified genes contributing to the pathogenicity of A. xylosoxidans and thereby improves our understanding and ability to treat this emerging pathogen.", "link"=>"http://www.mendeley.com/research/complete-genome-sequence-cystic-fibrosis-pathogen-achromobacter-xylosoxidans-nh447841996-complies-im", "reader_count"=>54, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>4, "Researcher"=>14, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>14, "Student > Postgraduate"=>1, "Student > Master"=>7, "Other"=>1, "Student > Bachelor"=>7, "Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>4, "Researcher"=>14, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>14, "Student > Postgraduate"=>1, "Student > Master"=>7, "Other"=>1, "Student > Bachelor"=>7, "Professor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>7, "Materials Science"=>1, "Agricultural and Biological Sciences"=>28, "Medicine and Dentistry"=>8, "Pharmacology, Toxicology and Pharmaceutical Science"=>1, "Chemistry"=>2, "Immunology and Microbiology"=>5}, "reader_count_by_subdiscipline"=>{"Materials Science"=>{"Materials Science"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>8}, "Chemistry"=>{"Chemistry"=>2}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>5}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>28}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>7}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>1}, "Pharmacology, Toxicology and Pharmaceutical Science"=>{"Pharmacology, Toxicology and Pharmaceutical Science"=>1}}, "reader_count_by_country"=>{"Netherlands"=>1, "United States"=>1, "Chile"=>1, "Spain"=>1}, "group_count"=>0}

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Figshare

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  • {"files"=>["https://ndownloader.figshare.com/files/1125106"], "description"=>"<p>Number of genes of <i>A. xylosoxidans</i> NH44784-1996, <i>E. coli</i> K-12 and <i>P. aeruginosa</i> PAO1 connected to the different subsystems in The RAST software.</p>", "links"=>[], "tags"=>["genes", "connected"], "article_id"=>750213, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Tim Holm Jakobsen", "Martin Asser Hansen", "Peter Østrup Jensen", "Lars Hansen", "Leise Riber", "April Cockburn", "Mette Kolpen", "Christine Rønne Hansen", "Winnie Ridderberg", "Steffen Eickhardt", "Marlene Hansen", "Peter Kerpedjiev", "Morten Alhede", "Klaus Qvortrup", "Mette Burmølle", "Claus Moser", "Michael Kühl", "Oana Ciofu", "Michael Givskov", "Søren J. Sørensen", "Niels Høiby", "Thomas Bjarnsholt"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0068484.g004", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Comparison_of_the_amount_of_genes_connected_to_subsystems_/750213", "title"=>"Comparison of the amount of genes connected to subsystems.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-07-22 02:42:29"}

PMC Usage Stats | Further Information

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Relative Metric

{"start_date"=>"2013-01-01T00:00:00Z", "end_date"=>"2013-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Ecology and environmental sciences", "average_usage"=>[284, 475, 603, 722, 826, 928, 1026, 1129, 1225, 1310, 1390, 1468, 1549]}, {"subject_area"=>"/Ecology and environmental sciences/Ecology", "average_usage"=>[298, 487, 610, 722, 827, 929, 1029, 1125, 1217, 1306, 1388, 1464, 1535]}, {"subject_area"=>"/Ecology and environmental sciences/Microbial ecology", "average_usage"=>[327, 538]}, {"subject_area"=>"/Medicine and health sciences/Pharmacology", "average_usage"=>[265, 471, 604, 723, 827, 926, 1022, 1113, 1210, 1290, 1377, 1454, 1532]}]}
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