Spatial Assessment of Amphibian Chytrid Fungus (Batrachochytrium dendrobatidis) in South Africa Confirms Endemic and Widespread Infection
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{"title"=>"Spatial Assessment of Amphibian Chytrid Fungus (Batrachochytrium dendrobatidis) in South Africa Confirms Endemic and Widespread Infection", "type"=>"journal", "authors"=>[{"first_name"=>"Jeanne", "last_name"=>"Tarrant", "scopus_author_id"=>"25929644100"}, {"first_name"=>"Dirk", "last_name"=>"Cilliers", "scopus_author_id"=>"55776420800"}, {"first_name"=>"Louis H.", "last_name"=>"du Preez", "scopus_author_id"=>"6603748989"}, {"first_name"=>"Ché", "last_name"=>"Weldon", "scopus_author_id"=>"56210394100"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"scopus"=>"2-s2.0-84880647317", "doi"=>"10.1371/journal.pone.0069591", "sgr"=>"84880647317", "isbn"=>"1932-6203", "pmid"=>"23894506", "issn"=>"19326203", "pui"=>"369412066"}, "id"=>"4a596fda-3509-347d-8828-de82dbc19bb4", "abstract"=>"Chytridiomycosis has been identified as a major cause of global amphibian declines. Despite widespread evidence of Batrachochytrium dendrobatidis infection in South African frogs, sampling for this disease has not focused on threatened species, or whether this pathogen poses a disease risk to these species. This study assessed the occurrence of Bd-infection in South African Red List species. In addition, all known records of infection from South Africa were used to model the ecological niche of Bd to provide a better understanding of spatial patterns and associated disease risk. Presence and prevalence of Bd was determined through quantitative real-time PCR of 360 skin swab samples from 17 threatened species from 38 sites across the country. Average prevalence was 14.8% for threatened species, with pathogen load varying considerably between species. MaxEnt was used to model the predicted distribution of Bd based on 683 positive records for South Africa. The resultant probability threshold map indicated that Bd is largely restricted to the wet eastern and coastal regions of South Africa. A lack of observed adverse impacts on wild threatened populations supports the endemic pathogen hypothesis for southern Africa. However, all threatened species occur within the limits of the predicted distribution for Bd, exposing them to potential Bd-associated risk factors. Predicting pathogen distribution patterns and potential impact is increasingly important for prioritising research and guiding management decisions.", "link"=>"http://www.mendeley.com/research/spatial-assessment-amphibian-chytrid-fungus-batrachochytrium-dendrobatidis-south-africa-confirms-end", "reader_count"=>60, "reader_count_by_academic_status"=>{"Unspecified"=>3, "Professor > Associate Professor"=>2, "Researcher"=>10, "Student > Doctoral Student"=>5, "Student > Ph. D. Student"=>7, "Student > Postgraduate"=>5, "Student > Master"=>16, "Other"=>2, "Student > Bachelor"=>8, "Professor"=>2}, "reader_count_by_user_role"=>{"Unspecified"=>3, "Professor > Associate Professor"=>2, "Researcher"=>10, "Student > Doctoral Student"=>5, "Student > Ph. D. Student"=>7, "Student > Postgraduate"=>5, "Student > Master"=>16, "Other"=>2, "Student > Bachelor"=>8, "Professor"=>2}, "reader_count_by_subject_area"=>{"Unspecified"=>4, "Environmental Science"=>9, "Biochemistry, Genetics and Molecular Biology"=>2, "Medicine and Dentistry"=>5, "Agricultural and Biological Sciences"=>39, "Immunology and Microbiology"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>5}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>39}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>2}, "Unspecified"=>{"Unspecified"=>4}, "Environmental Science"=>{"Environmental Science"=>9}}, "reader_count_by_country"=>{"United States"=>5, "Japan"=>1, "Brazil"=>2, "South Africa"=>4}, "group_count"=>1}

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  • {"files"=>["https://ndownloader.figshare.com/files/1125302"], "description"=>"<p>Grey indicates areas of medium to high probability of occurrence at a 10% threshold.</p>", "links"=>[], "tags"=>["ecology", "Community Ecology", "Ecological risk", "biodiversity", "Conservation science", "Freshwater ecology", "Species extinction", "microbiology", "Microbial pathogens", "Zoology", "Animal physiology", "Herpetology", "geography", "geoinformatics", "Environmental systems modeling", "Animal types", "Small animals", "occurrence"], "article_id"=>750388, "categories"=>["Biological Sciences", "Medicine", "Earth and Environmental Sciences"], "users"=>["Jeanne Tarrant", "Dirk Cilliers", "Louis H. du Preez", "Ché Weldon"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0069591.g002", "stats"=>{"downloads"=>0, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Probability_threshold_map_for_predicted_occurrence_of_Batrachochytrium_dendrobatidis_in_South_Africa_/750388", "title"=>"Probability threshold map for predicted occurrence of <i>Batrachochytrium dendrobatidis</i> in South Africa.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-07-22 03:00:58"}
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  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"9"}
  • {"unique-ip"=>"11", "full-text"=>"15", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"10"}
  • {"unique-ip"=>"6", "full-text"=>"7", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"11"}
  • {"unique-ip"=>"4", "full-text"=>"3", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"12"}
  • {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2021", "month"=>"1"}

Relative Metric

{"start_date"=>"2013-01-01T00:00:00Z", "end_date"=>"2013-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Ecology and environmental sciences", "average_usage"=>[284, 475, 603, 722, 826, 928, 1026, 1129, 1225, 1310, 1390, 1468, 1549]}, {"subject_area"=>"/Ecology and environmental sciences/Conservation science", "average_usage"=>[390, 618, 766, 904, 1030, 1153, 1268, 1391, 1487, 1591, 1685, 1767, 1865]}, {"subject_area"=>"/Medicine and health sciences", "average_usage"=>[264, 460, 584, 692, 794, 887, 978, 1067, 1154, 1241, 1328, 1408, 1474]}, {"subject_area"=>"/Medicine and health sciences/Pathology and laboratory medicine", "average_usage"=>[267, 466, 592, 709, 806, 901, 989, 1075, 1162, 1254, 1342, 1424, 1486]}, {"subject_area"=>"/People and places", "average_usage"=>[270, 456, 573, 676, 773, 867, 955, 1037, 1120, 1205, 1286, 1363, 1436]}]}
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