CRY2 Genetic Variants Associate with Dysthymia
Publication Date
August 08, 2013
Journal
PLOS ONE
Authors
Leena Kovanen, Mari Kaunisto, Kati Donner, Sirkku T. Saarikoski, et al
Volume
8
Issue
8
Pages
e71450
DOI
https://dx.plos.org/10.1371/journal.pone.0071450
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0071450
PubMed
http://www.ncbi.nlm.nih.gov/pubmed/23951166
PubMed Central
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3738504
Europe PMC
http://europepmc.org/abstract/MED/23951166
Web of Science
000323124000059
Scopus
84881364248
Mendeley
http://www.mendeley.com/research/cry2-genetic-variants-associate-dysthymia
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Mendeley | Further Information

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Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/1147091"], "description"=>"<p>BP; Base pair position based on NCBI36/hg18 build.</p><p>A<sub>1</sub>; Minor allele.</p><p>A<sub>2</sub>; Major allele.</p><p>MAF; Minor allele frequency.</p><p>A<sub>1</sub>A<sub>1</sub>, A<sub>1</sub>A<sub>2</sub>, A<sub>2</sub>A<sub>2</sub>; genotype counts and frequencies (%).</p><p>HWE-P; Hardy-Weinberg equilibrium p-value.</p><p>LD; Linkage disequilibrium.</p><p>TFBS, Transcription factor binding site.</p>", "links"=>[], "tags"=>["Anatomy and physiology", "Physiological processes", "Chronobiology", "genetics", "Human genetics", "Genetic association studies", "population genetics", "Genetic polymorphism", "Clinical genetics", "Mental health", "psychiatry", "Mood disorders", "genotyped", "allele", "genotype", "hardy-weinberg", "equilibrium"], "article_id"=>767579, "categories"=>["Medicine", "Biological Sciences"], "users"=>["Leena Kovanen", "Mari Kaunisto", "Kati Donner", "Sirkku T. Saarikoski", "Timo Partonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0071450.t002", "stats"=>{"downloads"=>3, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Successfully_genotyped_SNPs_their_selection_criteria_allele_and_genotype_frequencies_and_Hardy_Weinberg_equilibrium_p_values_/767579", "title"=>"Successfully genotyped SNPs, their selection criteria, allele and genotype frequencies, and Hardy-Weinberg equilibrium p-values.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-08-08 02:24:48"}
  • {"files"=>["https://ndownloader.figshare.com/files/1147090"], "description"=>"<p>ADD; Additive model.</p><p>DOM; Dominant model.</p><p>A1; Tested allele (minor allele).</p><p>L95, U95; Lower and upper bounds of 95% confidence interval for odds ratio.</p>*<p>Significant association.</p>", "links"=>[], "tags"=>["Anatomy and physiology", "Physiological processes", "Chronobiology", "genetics", "Human genetics", "Genetic association studies", "population genetics", "Genetic polymorphism", "Clinical genetics", "Mental health", "psychiatry", "Mood disorders", "snp"], "article_id"=>767578, "categories"=>["Medicine", "Biological Sciences"], "users"=>["Leena Kovanen", "Mari Kaunisto", "Kati Donner", "Sirkku T. Saarikoski", "Timo Partonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0071450.t003", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Results_from_the_single_SNP_association_analyses_q_lt_0_15_/767578", "title"=>"Results from the single SNP association analyses (q<0.15).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-08-08 02:24:48"}
  • {"files"=>["https://ndownloader.figshare.com/files/1147093", "https://ndownloader.figshare.com/files/1147094"], "description"=>"<div><p>People with mood disorders often have disruptions in their circadian rhythms. Recent molecular genetics has linked circadian clock genes to mood disorders. Our objective was to study two core circadian clock genes, <i>CRY1</i> and <i>CRY2</i> as well as <i>TTC1</i> that interacts with <i>CRY2</i>, in relation to depressive and anxiety disorders. Of these three genes, 48 single-nucleotide polymorphisms (SNPs) whose selection was based on the linkage disequilibrium and potential functionality were genotyped in 5910 individuals from a nationwide population-based sample. The diagnoses of major depressive disorder, dysthymia and anxiety disorders were assessed with a structured interview (M-CIDI). In addition, the participants filled in self-report questionnaires on depressive and anxiety symptoms. Logistic and linear regression models were used to analyze the associations of the SNPs with the phenotypes. Four <i>CRY2</i> genetic variants (rs10838524, rs7121611, rs7945565, rs1401419) associated significantly with dysthymia (false discovery rate q<0.05). This finding together with earlier <i>CRY2</i> associations with winter depression and with bipolar type 1 disorder supports the view that <i>CRY2</i> gene has a role in mood disorders.</p></div>", "links"=>[], "tags"=>["Anatomy and physiology", "Physiological processes", "Chronobiology", "genetics", "Human genetics", "Genetic association studies", "population genetics", "Genetic polymorphism", "Clinical genetics", "Mental health", "psychiatry", "Mood disorders", "variants", "dysthymia"], "article_id"=>767581, "categories"=>["Medicine", "Biological Sciences"], "users"=>["Leena Kovanen", "Mari Kaunisto", "Kati Donner", "Sirkku T. Saarikoski", "Timo Partonen"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0071450.s001", "https://dx.doi.org/10.1371/journal.pone.0071450.s002"], "stats"=>{"downloads"=>8, "page_views"=>17, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_CRY2_Genetic_Variants_Associate_with_Dysthymia/767581", "title"=>"<i>CRY2</i> Genetic Variants Associate with Dysthymia", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-08-08 02:24:48"}
  • {"files"=>["https://ndownloader.figshare.com/files/1147092"], "description"=>"<p>NSNP; Number of SNPs in this haplotype.</p><p>NHAP; Number of common haplotypes (f>0.01).</p><p>SNP1; SNP ID of the first SNP (5′).</p><p>SNP2; SNP ID of the last SNP (3′).</p>", "links"=>[], "tags"=>["Anatomy and physiology", "Physiological processes", "Chronobiology", "genetics", "Human genetics", "Genetic association studies", "population genetics", "Genetic polymorphism", "Clinical genetics", "Mental health", "psychiatry", "Mood disorders", "haplotype"], "article_id"=>767580, "categories"=>["Medicine", "Biological Sciences"], "users"=>["Leena Kovanen", "Mari Kaunisto", "Kati Donner", "Sirkku T. Saarikoski", "Timo Partonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0071450.t004", "stats"=>{"downloads"=>6, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Results_from_the_haplotype_association_analyses_p_lt_0_10_/767580", "title"=>"Results from the haplotype association analyses (p<0.10).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-08-08 02:24:48"}
  • {"files"=>["https://ndownloader.figshare.com/files/1147089"], "description"=>"<p>BDI; Beck Depression Inventory.</p><p>GHQ; General Health Questionnaire.</p><p>MBI; Maslach Burnout Inventory.</p><p>GSS; Global Seasonality Score.</p>", "links"=>[], "tags"=>["Anatomy and physiology", "Physiological processes", "Chronobiology", "genetics", "Human genetics", "Genetic association studies", "population genetics", "Genetic polymorphism", "Clinical genetics", "Mental health", "psychiatry", "Mood disorders", "subjects", "phenotypes", "diagnoses", "quantitative", "scores", "psychometric"], "article_id"=>767577, "categories"=>["Medicine", "Biological Sciences"], "users"=>["Leena Kovanen", "Mari Kaunisto", "Kati Donner", "Sirkku T. Saarikoski", "Timo Partonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0071450.t001", "stats"=>{"downloads"=>3, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Number_of_subjects_in_mental_health_related_phenotypes_DSM_IV_based_diagnoses_and_quantitative_scores_on_psychometric_scales_analyzed_in_the_study_/767577", "title"=>"Number of subjects in mental health related phenotypes (DSM-IV based diagnoses and quantitative scores on psychometric scales) analyzed in the study.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-08-08 02:24:48"}
  • {"files"=>["https://ndownloader.figshare.com/files/1147087"], "description"=>"<p>The analyzed <i>CRY2</i> SNPs, their location and the haplotype block structure constructed using the Haploview program showing r<sup>2</sup> values.</p>", "links"=>[], "tags"=>["Anatomy and physiology", "Physiological processes", "Chronobiology", "genetics", "Human genetics", "Genetic association studies", "population genetics", "Genetic polymorphism", "Clinical genetics", "Mental health", "psychiatry", "Mood disorders", "haplotype", "constructed", "haploview"], "article_id"=>767575, "categories"=>["Medicine", "Biological Sciences"], "users"=>["Leena Kovanen", "Mari Kaunisto", "Kati Donner", "Sirkku T. Saarikoski", "Timo Partonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0071450.g002", "stats"=>{"downloads"=>0, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_analyzed_CRY2_SNPs_their_location_and_the_haplotype_block_structure_constructed_using_the_Haploview_program_showing_r_2_values_/767575", "title"=>"The analyzed <i>CRY2</i> SNPs, their location and the haplotype block structure constructed using the Haploview program showing r<sup>2</sup> values.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-08-08 02:24:48"}
  • {"files"=>["https://ndownloader.figshare.com/files/1147088"], "description"=>"<p>The analyzed <i>TTC1</i> SNPs, their location and the haplotype block structure constructed using the Haploview program showing r<sup>2</sup> values.</p>", "links"=>[], "tags"=>["Anatomy and physiology", "Physiological processes", "Chronobiology", "genetics", "Human genetics", "Genetic association studies", "population genetics", "Genetic polymorphism", "Clinical genetics", "Mental health", "psychiatry", "Mood disorders", "haplotype", "constructed", "haploview"], "article_id"=>767576, "categories"=>["Medicine", "Biological Sciences"], "users"=>["Leena Kovanen", "Mari Kaunisto", "Kati Donner", "Sirkku T. Saarikoski", "Timo Partonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0071450.g003", "stats"=>{"downloads"=>0, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_analyzed_TTC1_SNPs_their_location_and_the_haplotype_block_structure_constructed_using_the_Haploview_program_showing_r_2_values_/767576", "title"=>"The analyzed <i>TTC1</i> SNPs, their location and the haplotype block structure constructed using the Haploview program showing r<sup>2</sup> values.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-08-08 02:24:48"}
  • {"files"=>["https://ndownloader.figshare.com/files/1147086"], "description"=>"<p>The confidence interval algorithm implemented in the Haploview program was used to construct the haplotype blocks.</p>", "links"=>[], "tags"=>["Anatomy and physiology", "Physiological processes", "Chronobiology", "genetics", "Human genetics", "Genetic association studies", "population genetics", "Genetic polymorphism", "Clinical genetics", "Mental health", "psychiatry", "Mood disorders", "snps", "haplotype", "formed"], "article_id"=>767574, "categories"=>["Medicine", "Biological Sciences"], "users"=>["Leena Kovanen", "Mari Kaunisto", "Kati Donner", "Sirkku T. Saarikoski", "Timo Partonen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0071450.g001", "stats"=>{"downloads"=>0, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_analyzed_CRY1_SNPs_in_this_study_their_location_and_the_haplotype_block_structure_of_the_area_formed_based_on_our_sample_showing_r_2_values_/767574", "title"=>"The analyzed <i>CRY1</i> SNPs in this study, their location and the haplotype block structure of the area formed based on our sample showing r<sup>2</sup> values.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-08-08 02:24:48"}

PMC Usage Stats | Further Information

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Relative Metric

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