The Population Structure and Diversity of Eggplant from Asia and the Mediterranean Basin
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{"title"=>"The Population Structure and Diversity of Eggplant from Asia and the Mediterranean Basin", "type"=>"journal", "authors"=>[{"first_name"=>"Fabio", "last_name"=>"Cericola", "scopus_author_id"=>"55847730000"}, {"first_name"=>"Ezio", "last_name"=>"Portis", "scopus_author_id"=>"6602657344"}, {"first_name"=>"Laura", "last_name"=>"Toppino", "scopus_author_id"=>"24178008400"}, {"first_name"=>"Lorenzo", "last_name"=>"Barchi", "scopus_author_id"=>"8385780700"}, {"first_name"=>"Nazareno", "last_name"=>"Acciarri", "scopus_author_id"=>"7004221140"}, {"first_name"=>"Tommaso", "last_name"=>"Ciriaci", "scopus_author_id"=>"6503940775"}, {"first_name"=>"Tea", "last_name"=>"Sala", "scopus_author_id"=>"55905332700"}, {"first_name"=>"Giuseppe Leonardo", "last_name"=>"Rotino", "scopus_author_id"=>"6602221950"}, {"first_name"=>"Sergio", "last_name"=>"Lanteri", "scopus_author_id"=>"7004305653"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"369770014", "doi"=>"10.1371/journal.pone.0073702", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pmid"=>"24040032", "issn"=>"19326203", "scopus"=>"2-s2.0-84883630767", "sgr"=>"84883630767"}, "id"=>"b73fcad8-7344-3b7c-b9bc-ba8a4baa4e9e", "abstract"=>"A collection of 238 eggplant breeding lines, heritage varieties and selections within local landraces provenanced from Asia and the Mediterranean Basin was phenotyped with respect to key plant and fruit traits, and genotyped using 24 microsatellite loci distributed uniformly throughout the genome. STRUCTURE analysis based on the genotypic data identified two major sub-groups, which to a large extent mirrored the provenance of the entries. With the goal to identify true-breeding types, 38 of the entries were discarded on the basis of microsatellite-based residual heterozygosity, along with a further nine which were not phenotypically uniform. The remaining 191 entries were scored for a set of 19 fruit and plant traits in a replicated experimental field trial. The phenotypic data were subjected to principal component and hierarchical principal component analyses, allowing three major morphological groups to be identified. All three morphological groups were represented in both the \"Occidental\" and the \"Oriental\" germplasm, so the correlation between the phenotypic and the genotypic data sets was quite weak. The relevance of these results for evolutionary studies and the further improvement of eggplant are discussed. The population structure of the core set of germplasm shows that it can be used as a basis for an association mapping approach.", "link"=>"http://www.mendeley.com/research/population-structure-diversity-eggplant-asia-mediterranean-basin", "reader_count"=>51, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>1, "Researcher"=>17, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>12, "Student > Postgraduate"=>1, "Student > Master"=>7, "Other"=>2, "Student > Bachelor"=>4, "Professor"=>2}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>1, "Researcher"=>17, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>12, "Student > Postgraduate"=>1, "Student > Master"=>7, "Other"=>2, "Student > Bachelor"=>4, "Professor"=>2}, "reader_count_by_subject_area"=>{"Unspecified"=>4, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>42, "Chemistry"=>1, "Economics, Econometrics and Finance"=>2}, "reader_count_by_subdiscipline"=>{"Chemistry"=>{"Chemistry"=>1}, "Economics, Econometrics and Finance"=>{"Economics, Econometrics and Finance"=>2}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>42}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>4}, "Environmental Science"=>{"Environmental Science"=>1}}, "reader_count_by_country"=>{"Greece"=>1, "Gambia"=>1, "United Kingdom"=>1, "Italy"=>1, "Israel"=>1, "Germany"=>1, "India"=>1}, "group_count"=>3}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/1194580"], "description"=>"*<p>P<0.05</p>**<p>P<0.01</p>***<p>P<0.001</p>", "links"=>[], "tags"=>["trait-by-trait", "191entries", "phenotyped", "ones", "residual", "heterozygosity", "phenotypic", "morphology-based", "groups"], "article_id"=>791450, "categories"=>["Biological Sciences", "Ecology", "Earth and Environmental Sciences"], "users"=>["Fabio Cericola", "Ezio Portis", "Laura Toppino", "Lorenzo Barchi", "Nazareno Acciarri", "Tommaso Ciriaci", "Tea Sala", "Giuseppe Leonardo Rotino", "Sergio Lanteri"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0073702.t004", "stats"=>{"downloads"=>5, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_distribution_of_trait_by_trait_performance_across_the_191entries_phenotyped_the_ones_not_showing_residual_heterozygosity_as_well_as_phenotypic_variation_and_the_statistical_significance_of_the_three_morphology_based_groups_identified_/791450", "title"=>"The distribution of trait-by-trait performance across the 191entries phenotyped (the ones not showing residual heterozygosity as well as phenotypic variation), and the statistical significance of the three morphology-based groups identified.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-09-06 02:11:07"}
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  • {"files"=>["https://ndownloader.figshare.com/files/1194574"], "description"=>"<p>a) The full germplasm set, and entries within b) morphological group 1, c) morphological group 2, d) morphological group 3.</p>", "links"=>[], "tags"=>["geographical"], "article_id"=>791444, "categories"=>["Biological Sciences", "Ecology", "Earth and Environmental Sciences"], "users"=>["Fabio Cericola", "Ezio Portis", "Laura Toppino", "Lorenzo Barchi", "Nazareno Acciarri", "Tommaso Ciriaci", "Tea Sala", "Giuseppe Leonardo Rotino", "Sergio Lanteri"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0073702.g005", "stats"=>{"downloads"=>0, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_PCA_based_on_geographical_origin_blue_8220_Occidental_8221_yellow_8220_Oriental_8221_/791444", "title"=>"PCA based on geographical origin (blue: “Occidental”; yellow: “Oriental”).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-09-06 02:11:07"}
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  • {"files"=>["https://ndownloader.figshare.com/files/1194568"], "description"=>"<p>(<i>K</i>) and Δ<i>K</i> plots derived from the genotypic data. The germplasm set forms two distinct sub-groups, with a small number of entries being intermediate.</p>", "links"=>[], "tags"=>[], "article_id"=>791438, "categories"=>["Biological Sciences", "Ecology", "Earth and Environmental Sciences"], "users"=>["Fabio Cericola", "Ezio Portis", "Laura Toppino", "Lorenzo Barchi", "Nazareno Acciarri", "Tommaso Ciriaci", "Tea Sala", "Giuseppe Leonardo Rotino", "Sergio Lanteri"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0073702.g001", "stats"=>{"downloads"=>0, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_STRUCTURE_analysis_/791438", "title"=>"STRUCTURE analysis.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-09-06 02:11:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/1194579"], "description"=>"<p>Correlation coefficients between each trait and the leading three PC’s, along with the associated eigenvalues and proportions of the overall variance explained.</p>", "links"=>[], "tags"=>["coefficients", "eigenvalues", "proportions", "variance"], "article_id"=>791449, "categories"=>["Biological Sciences", "Ecology", "Earth and Environmental Sciences"], "users"=>["Fabio Cericola", "Ezio Portis", "Laura Toppino", "Lorenzo Barchi", "Nazareno Acciarri", "Tommaso Ciriaci", "Tea Sala", "Giuseppe Leonardo Rotino", "Sergio Lanteri"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0073702.t005", "stats"=>{"downloads"=>2, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Correlation_coefficients_between_each_trait_and_the_leading_three_PC_8217_s_along_with_the_associated_eigenvalues_and_proportions_of_the_overall_variance_explained_/791449", "title"=>"Correlation coefficients between each trait and the leading three PC’s, along with the associated eigenvalues and proportions of the overall variance explained.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-09-06 02:11:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/1194577"], "description"=>"<p>Traits analysed to generate the phenotypic data set.</p>", "links"=>[], "tags"=>["analysed", "phenotypic"], "article_id"=>791447, "categories"=>["Biological Sciences", "Ecology", "Earth and Environmental Sciences"], "users"=>["Fabio Cericola", "Ezio Portis", "Laura Toppino", "Lorenzo Barchi", "Nazareno Acciarri", "Tommaso Ciriaci", "Tea Sala", "Giuseppe Leonardo Rotino", "Sergio Lanteri"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0073702.t003", "stats"=>{"downloads"=>7, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Traits_analysed_to_generate_the_phenotypic_data_set_/791447", "title"=>"Traits analysed to generate the phenotypic data set.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-09-06 02:11:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/1194578"], "description"=>"<p>Two of the assays (<i>ecm001</i> and <i>ecm023</i>) were designed from EST sequence <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0073702#pone.0073702-Stgel1\" target=\"_blank\">[29]</a>, while the others were designed from genomic sequence <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0073702#pone.0073702-Stgel1\" target=\"_blank\">[29]</a>–<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0073702#pone.0073702-Nunome1\" target=\"_blank\">[31]</a>. The chromosome location, the number of total and rare alleles detected and the PIC values are listed.</p>", "links"=>[], "tags"=>["24", "microsatellite", "loci"], "article_id"=>791448, "categories"=>["Biological Sciences", "Ecology", "Earth and Environmental Sciences"], "users"=>["Fabio Cericola", "Ezio Portis", "Laura Toppino", "Lorenzo Barchi", "Nazareno Acciarri", "Tommaso Ciriaci", "Tea Sala", "Giuseppe Leonardo Rotino", "Sergio Lanteri"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0073702.t002", "stats"=>{"downloads"=>5, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_24_microsatellite_loci_used_for_genotyping_/791448", "title"=>"The 24 microsatellite loci used for genotyping.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-09-06 02:11:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/1194576"], "description"=>"<p>Those shown in <i>italics</i> refer to entries retaining a level of heterozygosity >10%, and those shown <u>underlined</u> produced off-types with respect to plant and/or fruit type. Retained entries are shown in <b>bold</b>.</p>", "links"=>[], "tags"=>["germplasm", "genotypic", "phenotypic"], "article_id"=>791446, "categories"=>["Biological Sciences", "Ecology", "Earth and Environmental Sciences"], "users"=>["Fabio Cericola", "Ezio Portis", "Laura Toppino", "Lorenzo Barchi", "Nazareno Acciarri", "Tommaso Ciriaci", "Tea Sala", "Giuseppe Leonardo Rotino", "Sergio Lanteri"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0073702.t001", "stats"=>{"downloads"=>7, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_set_of_germplasm_used_for_genotypic_and_phenotypic_characterization_/791446", "title"=>"The set of germplasm used for genotypic and phenotypic characterization.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-09-06 02:11:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/1194573"], "description"=>"<p>Group 1∶1a = AM 269-Talindo; 1b = AM 026-Dr2; Group 2∶2a = AM 168-Angio 5; 2b = AM 031-FantE63D; 2c = AM 160-Dourga; Group 3∶3a = AM 037-Violetta di Toscana; 3b = AM 291∶17CAAS; 3c = AM 210-67/3.</p>", "links"=>[], "tags"=>["accessions", "belonging", "morphological"], "article_id"=>791443, "categories"=>["Biological Sciences", "Ecology", "Earth and Environmental Sciences"], "users"=>["Fabio Cericola", "Ezio Portis", "Laura Toppino", "Lorenzo Barchi", "Nazareno Acciarri", "Tommaso Ciriaci", "Tea Sala", "Giuseppe Leonardo Rotino", "Sergio Lanteri"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0073702.g004", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Fruits_of_accessions_belonging_to_the_three_main_morphological_groups_/791443", "title"=>"Fruits of accessions belonging to the three main morphological groups.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-09-06 02:11:07"}

PMC Usage Stats | Further Information

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Relative Metric

{"start_date"=>"2013-01-01T00:00:00Z", "end_date"=>"2013-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences/Biogeography", "average_usage"=>[321, 494, 634, 734, 850, 962, 1060, 1140, 1226, 1319, 1409, 1493, 1559]}, {"subject_area"=>"/Biology and life sciences/Genetics", "average_usage"=>[284, 491, 620, 738, 843, 945, 1043, 1137, 1225, 1315, 1400, 1479, 1555]}, {"subject_area"=>"/Biology and life sciences/Organisms", "average_usage"=>[281, 484, 611, 728, 835, 934, 1030, 1123, 1214, 1299, 1383, 1464]}, {"subject_area"=>"/Biology and life sciences/Plant science", "average_usage"=>[269, 451, 577, 699, 812, 922, 1019, 1126, 1225, 1309, 1404, 1493, 1563]}, {"subject_area"=>"/Earth sciences", "average_usage"=>[296, 488, 620, 717, 828, 938, 1038, 1130, 1230, 1328, 1414, 1502, 1592]}, {"subject_area"=>"/Earth sciences/Geography", "average_usage"=>[285, 472, 614, 714, 817, 928, 1028, 1122, 1225, 1327, 1410, 1482, 1549]}, {"subject_area"=>"/Ecology and environmental sciences/Biogeography", "average_usage"=>[320, 517, 642, 738, 850, 955, 1039, 1136, 1226, 1315, 1406, 1495, 1565]}]}
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