Comparative Analysis of ESBL-Positive Escherichia coli Isolates from Animals and Humans from the UK, The Netherlands and Germany
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{"title"=>"Comparative Analysis of ESBL-Positive Escherichia coli Isolates from Animals and Humans from the UK, The Netherlands and Germany", "type"=>"journal", "authors"=>[{"first_name"=>"Guanghui", "last_name"=>"Wu", "scopus_author_id"=>"7404976060"}, {"first_name"=>"Michaela J.", "last_name"=>"Day", "scopus_author_id"=>"55879453300"}, {"first_name"=>"Muriel T.", "last_name"=>"Mafura", "scopus_author_id"=>"21233856700"}, {"first_name"=>"Javier", "last_name"=>"Nunez-Garcia", "scopus_author_id"=>"6506268528"}, {"first_name"=>"Jackie J.", "last_name"=>"Fenner", "scopus_author_id"=>"25922293700"}, {"first_name"=>"Meenaxi", "last_name"=>"Sharma", "scopus_author_id"=>"55468793800"}, {"first_name"=>"Alieda", "last_name"=>"van Essen-Zandbergen", "scopus_author_id"=>"16445268800"}, {"first_name"=>"Irene", "last_name"=>"Rodríguez", "scopus_author_id"=>"12799242400"}, {"first_name"=>"Cindy", "last_name"=>"Dierikx", "scopus_author_id"=>"24780560200"}, {"first_name"=>"Kristina", "last_name"=>"Kadlec", "scopus_author_id"=>"8731401000"}, {"first_name"=>"Anne Kathrin", "last_name"=>"Schink", "scopus_author_id"=>"54797003200"}, {"first_name"=>"John", "last_name"=>"Wain", "scopus_author_id"=>"35265446800"}, {"first_name"=>"Reiner", "last_name"=>"Helmuth", "scopus_author_id"=>"24539300500"}, {"first_name"=>"Beatriz", "last_name"=>"Guerra", "scopus_author_id"=>"7006442276"}, {"first_name"=>"Stefan", "last_name"=>"Schwarz", "scopus_author_id"=>"55547479100"}, {"first_name"=>"John", "last_name"=>"Threlfall", "scopus_author_id"=>"6603524365"}, {"first_name"=>"Martin J.", "last_name"=>"Woodward", "scopus_author_id"=>"7102510790"}, {"first_name"=>"Neil", "last_name"=>"Woodford", "scopus_author_id"=>"7005737009"}, {"first_name"=>"Nick", "last_name"=>"Coldham", "scopus_author_id"=>"7003385756"}, {"first_name"=>"Dik", "last_name"=>"Mevius", "scopus_author_id"=>"7003794489"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"scopus"=>"2-s2.0-84884650083", "doi"=>"10.1371/journal.pone.0075392", "sgr"=>"84884650083", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pmid"=>"24086522", "issn"=>"19326203", "pui"=>"369899263"}, "id"=>"19a86801-3806-329d-b88d-ec386c7aacf8", "abstract"=>"The putative virulence and antimicrobial resistance gene contents of extended spectrum beta-lactamase (ESBL)-positive E. coli (n=629) isolated between 2005 and 2009 from humans, animals and animal food products in Germany, The Netherlands and the UK were compared using a microarray approach to test the suitability of this approach with regard to determining their similarities. A selection of isolates (n=313) were also analysed by multilocus sequence typing (MLST). Isolates harbouring bla CTX-M-group-1 dominated (66%, n=418) and originated from both animals and cases of human infections in all three countries; 23% (n=144) of all isolates contained both bla CTX-M-group-1 and bla OXA-1-like genes, predominantly from humans (n=127) and UK cattle (n=15). The antimicrobial resistance and virulence gene profiles of this collection of isolates were highly diverse. A substantial number of human isolates (32%, n=87) did not share more than 40% similarity (based on the Jaccard coefficient) with animal isolates. A further 43% of human isolates from the three countries (n=117) were at least 40% similar to each other and to five isolates from UK cattle and one each from Dutch chicken meat and a German dog; the members of this group usually harboured genes such as mph(A), mrx, aac(6')-Ib, catB3, bla OXA-1-like and bla CTX-M-group-1. forty-four per cent of the MLST-typed isolates in this group belonged to ST131 (n=18) and 22% to ST405 (n=9), all from humans. Among animal isolates subjected to MLST (n=258), only 1.2% (n=3) were more than 70% similar to human isolates in gene profiles and shared the same MLST clonal complex with the corresponding human isolates. The results suggest that minimising human-to-human transmission is essential to control the spread of ESBL-positive E. coli in humans.", "link"=>"http://www.mendeley.com/research/comparative-analysis-esblpositive-escherichia-coli-isolates-animals-humans-uk-netherlands-germany", "reader_count"=>100, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>2, "Researcher"=>22, "Student > Doctoral Student"=>6, "Student > Ph. D. Student"=>23, "Student > Postgraduate"=>9, "Student > Master"=>14, "Other"=>5, "Student > Bachelor"=>11, "Lecturer"=>2, "Lecturer > Senior Lecturer"=>2, "Professor"=>3}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>2, "Researcher"=>22, "Student > Doctoral Student"=>6, "Student > Ph. D. Student"=>23, "Student > Postgraduate"=>9, "Student > Master"=>14, "Other"=>5, "Student > Bachelor"=>11, "Lecturer"=>2, "Lecturer > Senior Lecturer"=>2, "Professor"=>3}, "reader_count_by_subject_area"=>{"Unspecified"=>5, "Engineering"=>1, "Environmental Science"=>3, "Biochemistry, Genetics and Molecular Biology"=>5, "Agricultural and Biological Sciences"=>41, "Medicine and Dentistry"=>27, "Neuroscience"=>1, "Veterinary Science and Veterinary Medicine"=>10, "Social Sciences"=>1, "Immunology and Microbiology"=>6}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>27}, "Neuroscience"=>{"Neuroscience"=>1}, "Social Sciences"=>{"Social Sciences"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>6}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>41}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>5}, "Unspecified"=>{"Unspecified"=>5}, "Environmental Science"=>{"Environmental Science"=>3}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>10}}, "reader_count_by_country"=>{"Ecuador"=>1, "Pakistan"=>1, "Japan"=>1, "Tanzania"=>1, "Brazil"=>1, "South Africa"=>1, "France"=>1, "Estonia"=>1}, "group_count"=>2}

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  • {"files"=>["https://ndownloader.figshare.com/files/1217344"], "description"=>"<p>Simpson’s Index of Diversity (1-D) of isolates from different categories (country and host species) at the similarity levels from 25% to 90%.</p>", "links"=>[], "tags"=>["isolates", "categories"], "article_id"=>809296, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Guanghui Wu", "Michaela J. Day", "Muriel T. Mafura", "Javier Nunez-Garcia", "Jackie J. Fenner", "Meenaxi Sharma", "Alieda van Essen-Zandbergen", "Irene Rodríguez", "Cindy Dierikx", "Kristina Kadlec", "Anne-Kathrin Schink", "John Wain", "Reiner Helmuth", "Beatriz Guerra", "Stefan Schwarz", "John Threlfall", "Martin J. Woodward", "Neil Woodford", "Nick Coldham", "Dik Mevius"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0075392.g002", "stats"=>{"downloads"=>0, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Simpson_8217_s_Index_of_Diversity_1_D_of_isolates_from_different_categories_country_and_host_species_at_the_similarity_levels_from_25_to_90_/809296", "title"=>"Simpson’s Index of Diversity (1-D) of isolates from different categories (country and host species) at the similarity levels from 25% to 90%.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-09-26 02:25:31"}
  • {"files"=>["https://ndownloader.figshare.com/files/1217345"], "description"=>"<p>Minimal spanning tree constructed based on the MLST profiles of the 313 isolates (Bionumerics V6) and coloured according to the cluster numbers: red, cluster 76; purple, cluster 103; light blue, cluster 30; dark green, cluster 42; green, no array data and white, a mixture of rare cluster number.</p>", "links"=>[], "tags"=>["spanning", "constructed", "mlst", "profiles", "313", "isolates", "coloured"], "article_id"=>809297, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Guanghui Wu", "Michaela J. Day", "Muriel T. Mafura", "Javier Nunez-Garcia", "Jackie J. Fenner", "Meenaxi Sharma", "Alieda van Essen-Zandbergen", "Irene Rodríguez", "Cindy Dierikx", "Kristina Kadlec", "Anne-Kathrin Schink", "John Wain", "Reiner Helmuth", "Beatriz Guerra", "Stefan Schwarz", "John Threlfall", "Martin J. Woodward", "Neil Woodford", "Nick Coldham", "Dik Mevius"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0075392.g003", "stats"=>{"downloads"=>0, "page_views"=>33, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Minimal_spanning_tree_constructed_based_on_the_MLST_profiles_of_the_313_isolates_Bionumerics_V6_and_coloured_according_to_the_cluster_numbers_red_cluster_76_purple_cluster_103_light_blue_cluster_30_dark_green_cluster_42_green_no_array_data_and_white_a_mi/809297", "title"=>"Minimal spanning tree constructed based on the MLST profiles of the 313 isolates (Bionumerics V6) and coloured according to the cluster numbers: red, cluster 76; purple, cluster 103; light blue, cluster 30; dark green, cluster 42; green, no array data and white, a mixture of rare cluster number.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-09-26 02:25:31"}
  • {"files"=>["https://ndownloader.figshare.com/files/1217346", "https://ndownloader.figshare.com/files/1217347", "https://ndownloader.figshare.com/files/1217348"], "description"=>"<div><p>The putative virulence and antimicrobial resistance gene contents of extended spectrum β-lactamase (ESBL)-positive <i>E. coli</i> (n=629) isolated between 2005 and 2009 from humans, animals and animal food products in Germany, The Netherlands and the UK were compared using a microarray approach to test the suitability of this approach with regard to determining their similarities. A selection of isolates (n=313) were also analysed by multilocus sequence typing (MLST). Isolates harbouring <i>bla</i><sub>CTX-M-group-1</sub> dominated (66%, n=418) and originated from both animals and cases of human infections in all three countries; 23% (n=144) of all isolates contained both <i>bla</i><sub>CTX-M-group-1</sub> and <i>bla</i><sub>OXA-1-like</sub> genes, predominantly from humans (n=127) and UK cattle (n=15). The antimicrobial resistance and virulence gene profiles of this collection of isolates were highly diverse. A substantial number of human isolates (32%, n=87) did not share more than 40% similarity (based on the Jaccard coefficient) with animal isolates. A further 43% of human isolates from the three countries (n=117) were at least 40% similar to each other and to five isolates from UK cattle and one each from Dutch chicken meat and a German dog; the members of this group usually harboured genes such as <i>mph</i>(A), <i>mrx, aac</i>(6’)-<i>Ib</i>, <i>catB3</i>, <i>bla</i><sub>OXA-1-like</sub> and <i>bla</i><sub>CTX-M-group-1.</sub> forty-four per cent of the MLST-typed isolates in this group belonged to ST131 (n=18) and 22% to ST405 (n=9), all from humans. Among animal isolates subjected to MLST (n=258), only 1.2% (n=3) were more than 70% similar to human isolates in gene profiles and shared the same MLST clonal complex with the corresponding human isolates. The results suggest that minimising human-to-human transmission is essential to control the spread of ESBL-positive <i>E. coli</i> in humans.</p> </div>", "links"=>[], "tags"=>["comparative", "esbl-positive", "isolates", "animals", "humans", "netherlands", "germany"], "article_id"=>809298, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Guanghui Wu", "Michaela J. Day", "Muriel T. Mafura", "Javier Nunez-Garcia", "Jackie J. Fenner", "Meenaxi Sharma", "Alieda van Essen-Zandbergen", "Irene Rodríguez", "Cindy Dierikx", "Kristina Kadlec", "Anne-Kathrin Schink", "John Wain", "Reiner Helmuth", "Beatriz Guerra", "Stefan Schwarz", "John Threlfall", "Martin J. Woodward", "Neil Woodford", "Nick Coldham", "Dik Mevius"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0075392.s001", "https://dx.doi.org/10.1371/journal.pone.0075392.s002", "https://dx.doi.org/10.1371/journal.pone.0075392.s003"], "stats"=>{"downloads"=>18, "page_views"=>20, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Comparative_Analysis_of_ESBL_Positive_Escherichia_coli_Isolates_from_Animals_and_Humans_from_the_UK_The_Netherlands_and_Germany/809298", "title"=>"Comparative Analysis of ESBL-Positive <i>Escherichia coli</i> Isolates from Animals and Humans from the UK, The Netherlands and Germany", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-09-26 02:25:31"}
  • {"files"=>["https://ndownloader.figshare.com/files/1217343"], "description"=>"<p>Isolates were grouped into 114 clusters at the 40% similarity level.</p>", "links"=>[], "tags"=>["grouped", "114", "clusters"], "article_id"=>809295, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Guanghui Wu", "Michaela J. Day", "Muriel T. Mafura", "Javier Nunez-Garcia", "Jackie J. Fenner", "Meenaxi Sharma", "Alieda van Essen-Zandbergen", "Irene Rodríguez", "Cindy Dierikx", "Kristina Kadlec", "Anne-Kathrin Schink", "John Wain", "Reiner Helmuth", "Beatriz Guerra", "Stefan Schwarz", "John Threlfall", "Martin J. Woodward", "Neil Woodford", "Nick Coldham", "Dik Mevius"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0075392.g001", "stats"=>{"downloads"=>1, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Isolates_were_grouped_into_114_clusters_at_the_40_similarity_level_/809295", "title"=>"Isolates were grouped into 114 clusters at the 40% similarity level.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-09-26 02:25:31"}

PMC Usage Stats | Further Information

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Relative Metric

{"start_date"=>"2013-01-01T00:00:00Z", "end_date"=>"2013-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences/Agriculture", "average_usage"=>[241, 422, 551, 659, 765, 866, 954, 1043, 1142, 1235, 1311, 1397, 1462]}, {"subject_area"=>"/Biology and life sciences/Microbiology", "average_usage"=>[293, 503, 638, 755, 861, 960, 1056, 1146, 1239, 1323, 1403, 1491, 1568]}, {"subject_area"=>"/Biology and life sciences/Molecular biology", "average_usage"=>[272, 466, 589, 702, 806, 903, 995, 1086, 1176, 1258, 1347, 1422, 1493]}, {"subject_area"=>"/Medicine and health sciences/Infectious diseases", "average_usage"=>[297, 523, 655, 765, 866, 971, 1070, 1159, 1256, 1337, 1424, 1496, 1568]}, {"subject_area"=>"/Medicine and health sciences/Pharmacology", "average_usage"=>[265, 471, 604, 723, 827, 926, 1022, 1113, 1210, 1290, 1377, 1454, 1532]}]}
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