Deciphering the Bacterial Microbiome of Citrus Plants in Response to ‘Candidatus Liberibacter asiaticus’-Infection and Antibiotic Treatments
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{"title"=>"Deciphering the bacterial microbiome of citrus plants in response to 'Candidatus liberibacter asiaticus'-infection and antibiotic treatments", "type"=>"journal", "authors"=>[{"first_name"=>"Muqing", "last_name"=>"Zhang", "scopus_author_id"=>"55545001000"}, {"first_name"=>"Charles A.", "last_name"=>"Powell", "scopus_author_id"=>"35600413300"}, {"first_name"=>"Lesley S.", "last_name"=>"Benyon", "scopus_author_id"=>"6505911125"}, {"first_name"=>"Hui", "last_name"=>"Zhou", "scopus_author_id"=>"55847750700"}, {"first_name"=>"Yongping", "last_name"=>"Duan", "scopus_author_id"=>"26649410300"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"372154293", "issn"=>"19326203", "isbn"=>"1932-6203 (Electronic)\\n1932-6203 (Linking)", "doi"=>"10.1371/journal.pone.0076331", "scopus"=>"2-s2.0-84892660868", "pmid"=>"24250784", "sgr"=>"84892660868"}, "id"=>"3cd423f4-1862-34df-a889-400f02321f72", "abstract"=>"The bacterial microbiomes of citrus plants were characterized in response to 'Candidatus Liberibacter asiaticus' (Las)-infection and treatments with ampicillin (Amp) and gentamicin (Gm) by Phylochip-based metagenomics. The results revealed that 7,407 of over 50,000 known Operational Taxonomic Units (OTUs) in 53 phyla were detected in citrus leaf midribs using the PhyloChip G3 array, of which five phyla were dominant, Proteobacteria (38.7%), Firmicutes (29.0%), Actinobacteria (16.1%), Bacteroidetes (6.2%) and Cyanobacteria (2.3%). The OTU62806, representing 'Candidatus Liberibacter', was present with a high titer in the plants graft-inoculated with Las-infected scions treated with Gm at 100 mg/L and in the water-treated control (CK1). However, the Las bacterium was not detected in the plants graft-inoculated with Las-infected scions treated with Amp at 1.0 g/L or in plants graft-inoculated with Las-free scions (CK2). The PhyloChip array demonstrated that more OTUs, at a higher abundance, were detected in the Gm-treated plants than in the other treatment and the controls. Pairwise comparisons indicated that 23 OTUs from the Achromobacter spp. and 12 OTUs from the Methylobacterium spp. were more abundant in CK2 and CK1, respectively. Ten abundant OTUs from the Stenotrophomonas spp. were detected only in the Amp-treatment. These results provide new insights into microbial communities that may be associated with the progression of citrus huanglongbing (HLB) and the potential effects of antibiotics on the disease and microbial ecology.", "link"=>"http://www.mendeley.com/research/deciphering-bacterial-microbiome-citrus-plants-response-candidatus-liberibacter-asiaticusinfection-a", "reader_count"=>47, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>1, "Librarian"=>1, "Researcher"=>15, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>10, "Student > Postgraduate"=>3, "Student > Master"=>5, "Other"=>3, "Student > Bachelor"=>3, "Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>1, "Librarian"=>1, "Researcher"=>15, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>10, "Student > Postgraduate"=>3, "Student > Master"=>5, "Other"=>3, "Student > Bachelor"=>3, "Professor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>3, "Materials Science"=>1, "Agricultural and Biological Sciences"=>39, "Neuroscience"=>1, "Chemistry"=>1}, "reader_count_by_subdiscipline"=>{"Materials Science"=>{"Materials Science"=>1}, "Neuroscience"=>{"Neuroscience"=>1}, "Chemistry"=>{"Chemistry"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>39}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>1}}, "reader_count_by_country"=>{"New Zealand"=>1, "United States"=>1, "China"=>1, "Brazil"=>3, "Mexico"=>1, "Spain"=>1}, "group_count"=>4}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/1273041", "https://ndownloader.figshare.com/files/1273042", "https://ndownloader.figshare.com/files/1273043", "https://ndownloader.figshare.com/files/1273044", "https://ndownloader.figshare.com/files/1273045", "https://ndownloader.figshare.com/files/1273046"], "description"=>"<div><p>The bacterial microbiomes of citrus plants were characterized in response to ‘<i>Candidatus</i> Liberibacter asiaticus’ (Las)-infection and treatments with ampicillin (Amp) and gentamicin (Gm) by Phylochip-based metagenomics. The results revealed that 7,407 of over 50,000 known Operational Taxonomic Units (OTUs) in 53 phyla were detected in citrus leaf midribs using the PhyloChip™ G3 array, of which five phyla were dominant, <i>Proteobacteria</i> (38.7%), <i>Firmicutes</i> (29.0%), <i>Actinobacteria</i> (16.1%), <i>Bacteroidetes</i> (6.2%) and <i>Cyanobacteria</i> (2.3%). The OTU62806, representing ‘<i>Candidatus</i> Liberibacter’, was present with a high titer in the plants graft-inoculated with Las-infected scions treated with Gm at 100 mg/L and in the water-treated control (CK<sub>1</sub>). However, the Las bacterium was not detected in the plants graft-inoculated with Las-infected scions treated with Amp at 1.0 g/L or in plants graft-inoculated with Las-free scions (CK<sub>2</sub>). The PhyloChip array demonstrated that more OTUs, at a higher abundance, were detected in the Gm-treated plants than in the other treatment and the controls. Pairwise comparisons indicated that 23 OTUs from the <i>Achromobacter</i> spp. and 12 OTUs from the <i>Methylobacterium</i> spp. were more abundant in CK<sub>2</sub> and CK<sub>1</sub>, respectively. Ten abundant OTUs from the <i>Stenotrophomonas</i> spp. were detected only in the Amp-treatment. These results provide new insights into microbial communities that may be associated with the progression of citrus huanglongbing (HLB) and the potential effects of antibiotics on the disease and microbial ecology.</p></div>", "links"=>[], "tags"=>["deciphering", "bacterial", "microbiome", "citrus", "plants", "liberibacter", "antibiotic", "treatments"], "article_id"=>844904, "categories"=>["Uncategorised"], "users"=>["Muqing Zhang", "Charles A. Powell", "Lesley S. Benyon", "Hui Zhou", "Yongping Duan"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0076331.s001", "https://dx.doi.org/10.1371/journal.pone.0076331.s002", "https://dx.doi.org/10.1371/journal.pone.0076331.s003", "https://dx.doi.org/10.1371/journal.pone.0076331.s004", "https://dx.doi.org/10.1371/journal.pone.0076331.s005", "https://dx.doi.org/10.1371/journal.pone.0076331.s006"], "stats"=>{"downloads"=>12, "page_views"=>18, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Deciphering_the_Bacterial_Microbiome_of_Citrus_Plants_in_Response_to_Candidatus_Liberibacter_asiaticus_Infection_and_Antibiotic_Treatments/844904", "title"=>"Deciphering the Bacterial Microbiome of Citrus Plants in Response to ‘<i>Candidatus</i> Liberibacter asiaticus’-Infection and Antibiotic Treatments", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-11-08 02:49:36"}
  • {"files"=>["https://ndownloader.figshare.com/files/1273021"], "description"=>"<p>Healthy grapefruit rootstocks graft-inoculated with HLB-affected lemon scions treated with ampicillin at a concentration of 1.0 g/L (<b>Amp</b>), gentamicin at a concentration of 100 mg/L (<b>Gm</b>), and a water control (disease control, <b>CK<sub>1</sub></b>); The healthy plants were graft-inoculated with Las-free lemon scions (healthy control, <b>CK<sub>2</sub></b>).</p>", "links"=>[], "tags"=>["symptoms", "inoculated"], "article_id"=>844899, "categories"=>["Uncategorised"], "users"=>["Muqing Zhang", "Charles A. Powell", "Lesley S. Benyon", "Hui Zhou", "Yongping Duan"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0076331.g002", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Huanglongbing_symptoms_of_the_inoculated_plants_/844899", "title"=>"Huanglongbing symptoms of the inoculated plants.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-11-08 02:49:36"}
  • {"files"=>["https://ndownloader.figshare.com/files/1273022"], "description"=>"<p>In the Venn diagram, the numbers in parentheses represent the number of bacterial OTUs that occurred in each antibiotic treatment [ampicillin (Amp) and gentamicin (Gm)], disease controls (CK<sub>1</sub>), healthy control (CK<sub>2</sub>) and their intersections. Pie charts A to G correspond to the appropriately labeled Venn diagram areas (A<sub>1</sub> to G<sub>1</sub> for the Amp treatment and A<sub>2</sub> to G<sub>2</sub> for the Gm treatment) and show families that contained over 1% of the total OTUs in each area. In pie charts A to G, the names of the families are followed by their frequencies as a percentage (%).</p>", "links"=>[], "tags"=>["bacterial", "otus", "antibiotic"], "article_id"=>844900, "categories"=>["Uncategorised"], "users"=>["Muqing Zhang", "Charles A. Powell", "Lesley S. Benyon", "Hui Zhou", "Yongping Duan"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0076331.g003", "stats"=>{"downloads"=>1, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distribution_of_the_bacterial_OTUs_in_response_to_antibiotic_treatments_/844900", "title"=>"Distribution of the bacterial OTUs in response to antibiotic treatments.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-11-08 02:49:36"}
  • {"files"=>["https://ndownloader.figshare.com/files/1273026"], "description"=>"§<p>Data were analyzed by a generalized linear mixed model using the SAS procedure GLIMMIX. Differences among treatment levels were determined with the LINES option of the LSMEANS statement. Different letter showed the significant difference at 0.05 levels (<i>Pr</i>≤0.05).</p>", "links"=>[], "tags"=>["asiaticus", "grapefruit", "graft-inoculated", "las-infected", "scions", "treated", "ampicillin", "gentamicin", "100", "grafted", "las-free"], "article_id"=>844902, "categories"=>["Uncategorised"], "users"=>["Muqing Zhang", "Charles A. Powell", "Lesley S. Benyon", "Hui Zhou", "Yongping Duan"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0076331.t001", "stats"=>{"downloads"=>0, "page_views"=>15, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Ca_L_asiaticus_Las_and_its_transmission_in_grapefruit_graft_inoculated_with_Las_infected_lemon_scions_treated_with_ampicillin_at_1_0_g_L_Amp_gentamicin_at_100_mg_L_Gm_or_water_disease_control_CK_1_as_well_as_grafted_with_the_Las_free_lemon_scions_healthy/844902", "title"=>"<i>Ca.</i> L. asiaticus (Las) and its transmission in grapefruit graft-inoculated with Las-infected lemon scions treated with ampicillin at 1.0 g/L (Amp), gentamicin at 100 mg/L (Gm), or water (disease control, CK<sub>1</sub>) as well as grafted with the Las-free lemon scions (healthy control, CK<sub>2</sub>).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-11-08 02:49:36"}
  • {"files"=>["https://ndownloader.figshare.com/files/1273017"], "description"=>"<p><b>A</b>) Composition and <b>B</b>) relative abundance of the bacterial Operational Taxonomic Units (OTUs) present in leaf midribs of scions from grapefruit rootstocks grafted with HLB-affected lemon scions treated with ampicillin (Amp), gentamicin (Gm) and water (disease control; CK<sub>1</sub>). The healthy plants were grafted using Las-free lemon scions (healthy control; CK<sub>2</sub>).</p>", "links"=>[], "tags"=>["midribs"], "article_id"=>844895, "categories"=>["Uncategorised"], "users"=>["Muqing Zhang", "Charles A. Powell", "Lesley S. Benyon", "Hui Zhou", "Yongping Duan"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0076331.g001", "stats"=>{"downloads"=>1, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Bacterial_community_of_leaf_midribs_of_scions_/844895", "title"=>"Bacterial community of leaf midribs of scions.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-11-08 02:49:36"}

PMC Usage Stats | Further Information

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Relative Metric

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