Dielectrophoresis-Based Discrimination of Bacteria at the Strain Level Based on Their Surface Properties
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{"title"=>"Dielectrophoresis-Based Discrimination of Bacteria at the Strain Level Based on Their Surface Properties", "type"=>"journal", "authors"=>[{"first_name"=>"William A.", "last_name"=>"Braff", "scopus_author_id"=>"26423559800"}, {"first_name"=>"Dana", "last_name"=>"Willner", "scopus_author_id"=>"26768382400"}, {"first_name"=>"Philip", "last_name"=>"Hugenholtz", "scopus_author_id"=>"55811879700"}, {"first_name"=>"Korneel", "last_name"=>"Rabaey", "scopus_author_id"=>"56220518700"}, {"first_name"=>"Cullen R.", "last_name"=>"Buie", "scopus_author_id"=>"12785253500"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"scopus"=>"2-s2.0-84885722647", "sgr"=>"84885722647", "issn"=>"19326203", "doi"=>"10.1371/journal.pone.0076751", "pmid"=>"24146923", "isbn"=>"1932-6203", "pui"=>"370046426"}, "id"=>"31c9ff01-2c6c-3238-bac9-7a53fb64c24d", "abstract"=>"Insulator-based dielectrophoresis can be used to manipulate biological particles, but has thus far found limited practical applications due to low sensitivity. We present linear sweep three-dimensional insulator-based dielectrophoresis as a considerably more sensitive approach for strain-level discrimination bacteria. In this work, linear sweep three-dimensional insulator-based dielectrophoresis was performed on Pseudomonas aeruginosa PA14 along with six isogenic mutants as well as Streptococcus mitis SF100 and PS344. Strain-level discrimination was achieved between these clinically important pathogens with applied electric fields below 10 V/mm. This low voltage, high sensitivity technique has potential applications in clinical diagnostics as well as microbial physiology research.", "link"=>"http://www.mendeley.com/research/dielectrophoresisbased-discrimination-bacteria-strain-level-based-surface-properties", "reader_count"=>41, "reader_count_by_academic_status"=>{"Unspecified"=>3, "Professor > Associate Professor"=>3, "Student > Doctoral Student"=>4, "Researcher"=>6, "Student > Ph. D. Student"=>10, "Student > Master"=>8, "Other"=>1, "Student > Bachelor"=>1, "Lecturer > Senior Lecturer"=>1, "Professor"=>4}, "reader_count_by_user_role"=>{"Unspecified"=>3, "Professor > Associate Professor"=>3, "Student > Doctoral Student"=>4, "Researcher"=>6, "Student > Ph. D. Student"=>10, "Student > Master"=>8, "Other"=>1, "Student > Bachelor"=>1, "Lecturer > Senior Lecturer"=>1, "Professor"=>4}, "reader_count_by_subject_area"=>{"Engineering"=>17, "Unspecified"=>6, "Environmental Science"=>2, "Biochemistry, Genetics and Molecular Biology"=>3, "Materials Science"=>1, "Agricultural and Biological Sciences"=>5, "Medicine and Dentistry"=>2, "Neuroscience"=>2, "Physics and Astronomy"=>1, "Chemistry"=>1, "Immunology and Microbiology"=>1}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>17}, "Materials Science"=>{"Materials Science"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>2}, "Neuroscience"=>{"Neuroscience"=>2}, "Chemistry"=>{"Chemistry"=>1}, "Physics and Astronomy"=>{"Physics and Astronomy"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>5}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Unspecified"=>{"Unspecified"=>6}, "Environmental Science"=>{"Environmental Science"=>2}}, "reader_count_by_country"=>{"United Kingdom"=>1}, "group_count"=>1}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/1240101"], "description"=>"<p>Fluorescence intensity as a function of time as voltage was swept at 1/s for <i>P. aeruginosa</i> PA01 WT (a), <i>cupA1</i> (b), <i>flgK</i> (c), <i>mucA</i> (d), <i>pelA</i> (e), <i>pilC</i> (f), <i>pvrR</i> (g), <i>S. mitis</i> SF100 (h), and PS344 (i) compared to <i>P. aeruginosa</i> PA14 WT.</p>", "links"=>[], "tags"=>["varies", "strains"], "article_id"=>825064, "categories"=>["Biological Sciences", "Ecology"], "users"=>["William A. Braff", "Dana Willner", "Philip Hugenholtz", "Korneel Rabaey", "Cullen R. Buie"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0076751.g004", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Linear_sweep_trapping_intensity_varies_across_strains_of_bacteria_/825064", "title"=>"Linear sweep trapping intensity varies across strains of bacteria.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-10-16 04:59:00"}
  • {"files"=>["https://ndownloader.figshare.com/files/1240098"], "description"=>"<p>Photographs of microfluidic chip (a) during fabrication, and (b) micrograph of the contraction region of the channel. (c) CAD rendering of the micro channel highlighting the constriction region. (d) Sample inverted fluorescent image of <i>S. mitis</i> SF100 trapping during 3DiDEP. Scale bars are 1 cm (a), and 100 <i>μ</i>m (b and d).</p>", "links"=>[], "tags"=>[], "article_id"=>825061, "categories"=>["Biological Sciences", "Ecology"], "users"=>["William A. Braff", "Dana Willner", "Philip Hugenholtz", "Korneel Rabaey", "Cullen R. Buie"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0076751.g001", "stats"=>{"downloads"=>4, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_3DiDEP_chip_design_/825061", "title"=>"3DiDEP chip design.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-10-16 04:59:00"}
  • {"files"=>["https://ndownloader.figshare.com/files/1240099"], "description"=>"<p>Fluorescence intensity (arb) (a) and time–lapse images (b) for aggregation of <i>S. mitis</i> SF100, PA14 WT, and PA14 <i>mucA</i> when exposed to a constant voltage difference of 45 V for t = 10–110 seconds. Away from the constriction, electrophoretic force acting on the bacteria dominates over electroosmotic fluid flow and moves the bacteria from right to left towards the negative electrode. Close to the constriction, positive dielectrophoresis pulls the bacteria back into the constriction. Trapping behavior was observed in PA14 <i>mucA</i> and SF100, but not in PA14 WT, while aggregation was only observed in PA14 <i>mucA</i>. The region of integration is shown in (b).</p>", "links"=>[], "tags"=>[], "article_id"=>825062, "categories"=>["Biological Sciences", "Ecology"], "users"=>["William A. Braff", "Dana Willner", "Philip Hugenholtz", "Korneel Rabaey", "Cullen R. Buie"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0076751.g002", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Trapping_of_bacteria_near_the_constriction_/825062", "title"=>"Trapping of bacteria near the constriction.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-10-16 04:59:00"}
  • {"files"=>["https://ndownloader.figshare.com/files/1240102"], "description"=>"<p>Summary of the investigated bacterial strains.</p>", "links"=>[], "tags"=>["investigated", "bacterial"], "article_id"=>825065, "categories"=>["Biological Sciences", "Ecology"], "users"=>["William A. Braff", "Dana Willner", "Philip Hugenholtz", "Korneel Rabaey", "Cullen R. Buie"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0076751.t001", "stats"=>{"downloads"=>1, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Summary_of_the_investigated_bacterial_strains_/825065", "title"=>"Summary of the investigated bacterial strains.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-10-16 04:59:00"}
  • {"files"=>["https://ndownloader.figshare.com/files/1240100"], "description"=>"<p>Integrated fluorescence intensity of PA14 WT and PA14 <i>pvrR</i> as a function of time, with representative inverted fluorescent images of PA14 <i>pvrR</i> (a). Voltage was swept at 1 V/s for 100 seconds (e.g. 50 s corresponds to 50 V applied). The response can be characterized by the time at which trapping can first be observed and the rate at which bacteria accumulate. Trapping initiation and bacteria accumulation rate for all ten strains investigated (b). Initial trapping and cell accumulation rate are fitted as shown in the inset. <i>pvrR</i>, <i>mucA</i>, and <i>pelA</i> demonstrate earlier and stronger responses than PA14 WT, while <i>flgK</i>, <i>pilC</i>, and <i>cupA1</i> exhibit later and weaker responses. Accumulation rates for S. mitis SF100 and PS344 are similar, but PS344 traps earlier (i.e. at a lower voltage).</p>", "links"=>[], "tags"=>[], "article_id"=>825063, "categories"=>["Biological Sciences", "Ecology"], "users"=>["William A. Braff", "Dana Willner", "Philip Hugenholtz", "Korneel Rabaey", "Cullen R. Buie"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0076751.g003", "stats"=>{"downloads"=>2, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Analysis_of_key_trapping_parameters_/825063", "title"=>"Analysis of key trapping parameters.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-10-16 04:59:00"}

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Relative Metric

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