Comparisons of microRNA Patterns in Plasma before and after Tumor Removal Reveal New Biomarkers of Lung Squamous Cell Carcinoma
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{"title"=>"Comparisons of microRNA Patterns in Plasma before and after Tumor Removal Reveal New Biomarkers of Lung Squamous Cell Carcinoma", "type"=>"journal", "authors"=>[{"first_name"=>"Vasily N.", "last_name"=>"Aushev", "scopus_author_id"=>"34871261800"}, {"first_name"=>"Irina B.", "last_name"=>"Zborovskaya", "scopus_author_id"=>"6603391550"}, {"first_name"=>"Konstantin K.", "last_name"=>"Laktionov", "scopus_author_id"=>"55410862500"}, {"first_name"=>"Nicolas", "last_name"=>"Girard", "scopus_author_id"=>"9640393800"}, {"first_name"=>"Marie Pierre", "last_name"=>"Cros", "scopus_author_id"=>"6603773369"}, {"first_name"=>"Zdenko", "last_name"=>"Herceg", "scopus_author_id"=>"7004082002"}, {"first_name"=>"Vladimir", "last_name"=>"Krutovskikh", "scopus_author_id"=>"7004004414"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"369979915", "sgr"=>"84885161300", "issn"=>"19326203", "pmid"=>"24130905", "scopus"=>"2-s2.0-84885161300", "doi"=>"10.1371/journal.pone.0078649", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)"}, "id"=>"5af23d01-b798-3997-96b3-de97cd6fc9b5", "abstract"=>"Lung cancer is the major human malignancy, accounting for 30% of all cancer-related deaths worldwide. Poor survival of lung cancer patients, together with late diagnosis and resistance to classic chemotherapy, highlights the need for identification of new biomarkers for early detection. Among different cancer biomarkers, small non-coding RNAs called microRNAs (miRNAs) are considered the most promising, owing to their remarkable stability, their cancer-type specificity, and their presence in body fluids. However, results of multiple previous attempts to identify circulating miRNAs specific for lung cancer are inconsistent, likely due to two main reasons: prominent variability in blood miRNA content among individuals and difficulties in distinguishing tumor-relevant miRNAs in the blood from their non-tumor counterparts. To overcome these impediments, we compared circulating miRNA profiles in patients with lung squamous cell carcinoma (SCC) before and after tumor removal, assuming that the levels of all tumor-relevant miRNAs would drop after the surgery. Our results revealed a specific panel of the miRNAs (miR-205, -19a, -19b, -30b, and -20a) whose levels decreased strikingly in the blood of patients after lung SCC surgery. Interestingly, miRNA profiling of plasma fractions of lung SCC patients revealed high levels of these miRNA species in tumor-specific exosomes; additionally, some of these miRNAs were also found to be selectively secreted to the medium by cultivated lung cancer cells. These results strengthen the notion that tumor cells secrete miRNA-containing exosomes into circulation, and that miRNA profiling of the exosomal plasma fraction may reveal powerful cancer biomarkers.", "link"=>"http://www.mendeley.com/research/comparisons-microrna-patterns-plasma-before-after-tumor-removal-reveal-new-biomarkers-lung-squamous", "reader_count"=>75, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>3, "Researcher"=>21, "Student > Doctoral Student"=>3, "Student > Ph. D. Student"=>23, "Student > Postgraduate"=>4, "Student > Master"=>9, "Other"=>6, "Student > Bachelor"=>4, "Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>3, "Researcher"=>21, "Student > Doctoral Student"=>3, "Student > Ph. D. Student"=>23, "Student > Postgraduate"=>4, "Student > Master"=>9, "Other"=>6, "Student > Bachelor"=>4, "Professor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Biochemistry, Genetics and Molecular Biology"=>19, "Medicine and Dentistry"=>23, "Agricultural and Biological Sciences"=>26, "Business, Management and Accounting"=>1, "Chemistry"=>1, "Immunology and Microbiology"=>3}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>23}, "Chemistry"=>{"Chemistry"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>3}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>26}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>19}, "Unspecified"=>{"Unspecified"=>2}}, "reader_count_by_country"=>{"Netherlands"=>1, "Belgium"=>1, "Denmark"=>2, "Brazil"=>1, "United Kingdom"=>1, "France"=>1, "Portugal"=>1, "Germany"=>1}, "group_count"=>4}

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Figshare

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  • {"files"=>["https://ndownloader.figshare.com/files/1230758"], "description"=>"<p>Numbers correspond to the logarithm of fold change of miRNA expression level detected in cells versus conditioned medium.</p>", "links"=>[], "tags"=>["mirna", "subsets", "secreted", "retained", "cytoplasm", "a2182", "cancer"], "article_id"=>818589, "categories"=>["Uncategorised"], "users"=>["Vasily N. Aushev", "Irina B. Zborovskaya", "Konstantin K. Laktionov", "Nicolas Girard", "Marie-Pierre Cros", "Zdenko Herceg", "Vladimir Krutovskikh"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0078649.g004", "stats"=>{"downloads"=>0, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distribution_of_miRNA_subsets_specifically_either_secreted_into_the_medium_left_or_retained_in_the_cytoplasm_right_of_the_A2182_human_lung_cancer_cell_line_/818589", "title"=>"Distribution of miRNA subsets specifically either secreted into the medium (left) or retained in the cytoplasm (right) of the A2182 human lung cancer cell line.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-10-09 03:22:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/1230751"], "description"=>"<p>Analysis was performed with BRB-ArrayTools software. A group of miRNAs on the left side of the plot (miR-205, -19a, -19b, -451, -30b, -20a, and -93) are the most abundant in the plasma of lung SCC patients and are reduced in the plasma after tumor removal.</p>", "links"=>[], "tags"=>["ratios", "mirnas", "patients"], "article_id"=>818582, "categories"=>["Uncategorised"], "users"=>["Vasily N. Aushev", "Irina B. Zborovskaya", "Konstantin K. Laktionov", "Nicolas Girard", "Marie-Pierre Cros", "Zdenko Herceg", "Vladimir Krutovskikh"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0078649.g001", "stats"=>{"downloads"=>0, "page_views"=>17, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Scatter_plot_of_pre_post_surgery_ratios_for_expression_of_the_analyzed_miRNAs_in_patients_with_lung_SCC_/818582", "title"=>"Scatter plot of pre-/post-surgery ratios for expression of the analyzed miRNAs in patients with lung SCC.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-10-09 03:22:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/1230757"], "description"=>"<p>Enrichment in expression of various miRNA species in the ExoQuick-precipitated fraction (“Exosomal fraction”) compared with the ExoQuick-depleted fraction (“Exosome-free fraction”) of the same pre-operative plasma samples from patients with lung SCC.</p>", "links"=>[], "tags"=>["mirna", "exoquick-precipitated", "compared", "exoquick-depleted", "pre-operative", "plasma", "samples", "patients"], "article_id"=>818588, "categories"=>["Uncategorised"], "users"=>["Vasily N. Aushev", "Irina B. Zborovskaya", "Konstantin K. Laktionov", "Nicolas Girard", "Marie-Pierre Cros", "Zdenko Herceg", "Vladimir Krutovskikh"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0078649.g003", "stats"=>{"downloads"=>1, "page_views"=>19, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Enrichment_in_expression_of_various_miRNA_species_in_the_ExoQuick_precipitated_fraction_8220_Exosomal_fraction_8221_compared_with_the_ExoQuick_depleted_fraction_8220_Exosome_free_fraction_8221_of_the_same_pre_operative_plasma_samples_from_patients_with_l/818588", "title"=>"Enrichment in expression of various miRNA species in the ExoQuick-precipitated fraction (“Exosomal fraction”) compared with the ExoQuick-depleted fraction (“Exosome-free fraction”) of the same pre-operative plasma samples from patients with lung SCC.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-10-09 03:22:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/1230766", "https://ndownloader.figshare.com/files/1230767", "https://ndownloader.figshare.com/files/1230768", "https://ndownloader.figshare.com/files/1230769"], "description"=>"<div><p>Lung cancer is the major human malignancy, accounting for 30% of all cancer-related deaths worldwide. Poor survival of lung cancer patients, together with late diagnosis and resistance to classic chemotherapy, highlights the need for identification of new biomarkers for early detection. Among different cancer biomarkers, small non-coding RNAs called microRNAs (miRNAs) are considered the most promising, owing to their remarkable stability, their cancer-type specificity, and their presence in body fluids. However, results of multiple previous attempts to identify circulating miRNAs specific for lung cancer are inconsistent, likely due to two main reasons: prominent variability in blood miRNA content among individuals and difficulties in distinguishing tumor-relevant miRNAs in the blood from their non-tumor counterparts. To overcome these impediments, we compared circulating miRNA profiles in patients with lung squamous cell carcinoma (SCC) before and after tumor removal, assuming that the levels of all tumor-relevant miRNAs would drop after the surgery. Our results revealed a specific panel of the miRNAs (miR-205, -19a, -19b, -30b, and -20a) whose levels decreased strikingly in the blood of patients after lung SCC surgery. Interestingly, miRNA profiling of plasma fractions of lung SCC patients revealed high levels of these miRNA species in tumor-specific exosomes; additionally, some of these miRNAs were also found to be selectively secreted to the medium by cultivated lung cancer cells. These results strengthen the notion that tumor cells secrete miRNA-containing exosomes into circulation, and that miRNA profiling of the exosomal plasma fraction may reveal powerful cancer biomarkers.</p> </div>", "links"=>[], "tags"=>["microrna", "patterns", "plasma", "biomarkers", "squamous"], "article_id"=>818597, "categories"=>["Uncategorised"], "users"=>["Vasily N. Aushev", "Irina B. Zborovskaya", "Konstantin K. Laktionov", "Nicolas Girard", "Marie-Pierre Cros", "Zdenko Herceg", "Vladimir Krutovskikh"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0078649.s001", "https://dx.doi.org/10.1371/journal.pone.0078649.s002", "https://dx.doi.org/10.1371/journal.pone.0078649.s003", "https://dx.doi.org/10.1371/journal.pone.0078649.s004"], "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Comparisons_of_microRNA_Patterns_in_Plasma_before_and_after_Tumor_Removal_Reveal_New_Biomarkers_of_Lung_Squamous_Cell_Carcinoma_/818597", "title"=>"Comparisons of microRNA Patterns in Plasma before and after Tumor Removal Reveal New Biomarkers of Lung Squamous Cell Carcinoma", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-10-09 03:22:50"}

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Relative Metric

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