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{"title"=>"Sputum microbiota associated with new, recurrent and treatment failure tuberculosis", "type"=>"journal", "authors"=>[{"first_name"=>"Jing", "last_name"=>"Wu", "scopus_author_id"=>"56197132800"}, {"first_name"=>"Wei", "last_name"=>"Liu", "scopus_author_id"=>"56005666100"}, {"first_name"=>"Lei", "last_name"=>"He", "scopus_author_id"=>"55965230400"}, {"first_name"=>"Fuli", "last_name"=>"Huang", "scopus_author_id"=>"55497585800"}, {"first_name"=>"Jiazhen", "last_name"=>"Chen", "scopus_author_id"=>"23388415000"}, {"first_name"=>"Peng", "last_name"=>"Cui", "scopus_author_id"=>"56004969300"}, {"first_name"=>"Yaojie", "last_name"=>"Shen", "scopus_author_id"=>"55496674600"}, {"first_name"=>"Jing", "last_name"=>"Zhao", "scopus_author_id"=>"57189509110"}, {"first_name"=>"Wenjie", "last_name"=>"Wang", "scopus_author_id"=>"55261048200"}, {"first_name"=>"Yan", "last_name"=>"Zhang", "scopus_author_id"=>"56005696400"}, {"first_name"=>"Min", "last_name"=>"Zhu", "scopus_author_id"=>"56004707600"}, {"first_name"=>"Wenhong", "last_name"=>"Zhang", "scopus_author_id"=>"35279057300"}, {"first_name"=>"Ying", "last_name"=>"Zhang", "scopus_author_id"=>"37001229200"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"372141715", "sgr"=>"84892499115", "issn"=>"19326203", "pmid"=>"24349510", "scopus"=>"2-s2.0-84892499115", "doi"=>"10.1371/journal.pone.0083445", "isbn"=>"1932-6203"}, "id"=>"5fb015e7-7f80-3e08-b9c9-8dfeff4d47be", "abstract"=>"Microbiota have recently been shown to be associated with many disease conditions. However, the microbiota associated with tuberculosis (TB) infection, recurrence and treatment outcome have not been systematically characterized. Here, we used high throughput 16S RNA sequencing to analyze the sputum microbiota associated with Mycobacterium tuberculosis infection and also to identify the microorganisms associated with different outcomes of TB treatment. We recruited 25 new TB patients, 30 recurrent TB patients and 20 TB patients with treatment failure, as well as 20 healthy controls. Streptococcus, Gramulicatella and Pseudomonas were more abundant in TB patients while Prevotella, Leptotrichia, Treponema, Catonella and Coprococcus were less abundant in TB patients than in the healthy controls. We found reduced frequency and abundance of some genera such as Bulleidia and Atopobium in recurrent TB patients compared with those in new TB patients. In addition, the ratio of Pseudomonas / Mycobacterium in recurrent TB was higher than that in new TB while the ratio of Treponema / Mycobacterium in recurrent TB was lower than that in new TB, indicating that disruption of these bacteria may be a risk factor of TB recurrence. Furthermore, Pseudomonas was more abundant and more frequently present in treatment failure patients than in cured new patients, and the ratio of Pseudomonas / Mycobacterium in treatment failure was higher than that in new TB. Our data suggest that the presence of certain bacteria and the disorder of lung microbiota may be associated with not only onset of TB but also its recurrence and treatment failure. These findings indicate that lung microbiota may play a role in pathogenesis and treatment outcome of TB and may need to be taken into consideration for improved treatment and control of TB in the future.", "link"=>"http://www.mendeley.com/research/sputum-microbiota-associated-new-recurrent-treatment-failure-tuberculosis", "reader_count"=>84, "reader_count_by_academic_status"=>{"Unspecified"=>6, "Professor > Associate Professor"=>7, "Researcher"=>27, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>14, "Student > Postgraduate"=>6, "Student > Master"=>6, "Other"=>1, "Student > Bachelor"=>8, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>1, "Professor"=>3}, "reader_count_by_user_role"=>{"Unspecified"=>6, "Professor > Associate Professor"=>7, "Researcher"=>27, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>14, "Student > Postgraduate"=>6, "Student > Master"=>6, "Other"=>1, "Student > Bachelor"=>8, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>1, "Professor"=>3}, "reader_count_by_subject_area"=>{"Engineering"=>1, "Unspecified"=>6, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>5, "Nursing and Health Professions"=>1, "Materials Science"=>1, "Agricultural and Biological Sciences"=>30, "Medicine and Dentistry"=>25, "Business, Management and Accounting"=>1, "Social Sciences"=>1, "Computer Science"=>1, "Immunology and Microbiology"=>11}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Materials Science"=>{"Materials Science"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>25}, "Social Sciences"=>{"Social Sciences"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>11}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>30}, "Computer Science"=>{"Computer Science"=>1}, "Nursing and Health Professions"=>{"Nursing and Health Professions"=>1}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>5}, "Unspecified"=>{"Unspecified"=>6}, "Environmental Science"=>{"Environmental Science"=>1}}, "reader_count_by_country"=>{"Canada"=>1, "United States"=>1, "South Africa"=>1}, "group_count"=>2}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/1314707"], "description"=>"<p>(a) Phylum level abundance profiles in each sample. Color band is sorted by the most abundant phylum <i>Firmicutes</i> in each group. All 11 detected phyla are listed as symbols. (b) Genus level abundance profiles in each sample. Color band was sorted by the most abundant genus <i>Streptococcus</i> in each group. Only the top 10 genera are shown in the figure, see Information S1in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0083445#pone.0083445.s001\" target=\"_blank\">File S1</a> for additional details.</p>", "links"=>[], "tags"=>["abundance", "microbial", "categoeis", "tb", "patients"], "article_id"=>877484, "categories"=>["Biological Sciences"], "users"=>["Jing Wu", "Wei Liu", "Lei He", "Fuli Huang", "Jiazhen Chen", "Peng Cui", "Yaojie Shen", "Jing Zhao", "Wenjie Wang", "Yan Zhang", "Min Zhu", "Wenhong Zhang", "Ying Zhang"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0083445.g003", "stats"=>{"downloads"=>0, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Relative_abundance_of_microbial_composition_in_different_categoeis_of_TB_patients_and_healthy_controls_/877484", "title"=>"Relative abundance of microbial composition in different categoeis of TB patients and healthy controls.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-12-13 03:08:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/1314704"], "description"=>"<p>A total of 104 participants were recruited, and 95 were eligible for inclusion. Pulmonary TB patients were divided into three groups: New TB patients (N=25), recurrent TB patients (N=30), and treatment failure in TB patients (N=20). Participants without TB or other diseases served as healthy controls (N=20).</p>", "links"=>[], "tags"=>[], "article_id"=>877481, "categories"=>["Biological Sciences"], "users"=>["Jing Wu", "Wei Liu", "Lei He", "Fuli Huang", "Jiazhen Chen", "Peng Cui", "Yaojie Shen", "Jing Zhao", "Wenjie Wang", "Yan Zhang", "Min Zhu", "Wenhong Zhang", "Ying Zhang"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0083445.g001", "stats"=>{"downloads"=>1, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Flowchart_of_the_study_design_/877481", "title"=>"Flowchart of the study design.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-12-13 03:08:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/1314715"], "description"=>"<div><p>Microbiota have recently been shown to be associated with many disease conditions. However, the microbiota associated with tuberculosis (TB) infection, recurrence and treatment outcome have not been systematically characterized. Here, we used high throughput 16S RNA sequencing to analyze the sputum microbiota associated with <i>Mycobacterium tuberculosis</i> infection and also to identify the microorganisms associated with different outcomes of TB treatment. We recruited 25 new TB patients, 30 recurrent TB patients and 20 TB patients with treatment failure, as well as 20 healthy controls. <i>Streptococcus</i>, <i>Gramulicatella</i> and <i>Pseudomonas</i> were more abundant in TB patients while <i>Prevotella</i>, <i>Leptotrichia</i>, <i>Treponema</i>, <i>Catonella</i> and <i>Coprococcus</i> were less abundant in TB patients than in the healthy controls. We found reduced frequency and abundance of some genera such as <i>Bulleidia</i> and <i>Atopobium</i> in recurrent TB patients compared with those in new TB patients. In addition, the ratio of <i>Pseudomonas</i> / <i>Mycobacterium</i> in recurrent TB was higher than that in new TB while the ratio of <i>Treponema</i> / <i>Mycobacterium</i> in recurrent TB was lower than that in new TB, indicating that disruption of these bacteria may be a risk factor of TB recurrence. Furthermore, <i>Pseudomonas</i> was more abundant and more frequently present in treatment failure patients than in cured new patients, and the ratio of <i>Pseudomonas</i> / <i>Mycobacterium</i> in treatment failure was higher than that in new TB. Our data suggest that the presence of certain bacteria and the disorder of lung microbiota may be associated with not only onset of TB but also its recurrence and treatment failure. These findings indicate that lung microbiota may play a role in pathogenesis and treatment outcome of TB and may need to be taken into consideration for improved treatment and control of TB in the future.</p> </div>", "links"=>[], "tags"=>["microbiota", "recurrent"], "article_id"=>877492, "categories"=>["Biological Sciences"], "users"=>["Jing Wu", "Wei Liu", "Lei He", "Fuli Huang", "Jiazhen Chen", "Peng Cui", "Yaojie Shen", "Jing Zhao", "Wenjie Wang", "Yan Zhang", "Min Zhu", "Wenhong Zhang", "Ying Zhang"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0083445", "stats"=>{"downloads"=>12, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Sputum_Microbiota_Associated_with_New_Recurrent_and_Treatment_Failure_Tuberculosis_/877492", "title"=>"Sputum Microbiota Associated with New, Recurrent and Treatment Failure Tuberculosis", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-12-13 03:08:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/1314712"], "description"=>"<p>Mann–Whitney tests were performed between any two groups, and Kruskal–Wallis test were performed among four groups. N-TB, new TB patients; R-TB, recurrent TB patients; F-TB treatment failure TB patients; HC, healthy controls.</p>", "links"=>[], "tags"=>["abundance", "genera"], "article_id"=>877489, "categories"=>["Biological Sciences"], "users"=>["Jing Wu", "Wei Liu", "Lei He", "Fuli Huang", "Jiazhen Chen", "Peng Cui", "Yaojie Shen", "Jing Zhao", "Wenjie Wang", "Yan Zhang", "Min Zhu", "Wenhong Zhang", "Ying Zhang"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0083445.g006", "stats"=>{"downloads"=>0, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Mean_relative_abundance_of_genera_with_statistical_difference_among_different_groups_/877489", "title"=>"Mean relative abundance of genera with statistical difference among different groups.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-12-13 03:08:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/1314710"], "description"=>"<p>Each column shows the relative percentage of the most dominant genus in each group. N-TB, new TB patients; R-TB, recurrent TB patients; F-TB treatment failure TB patients.</p>", "links"=>[], "tags"=>["genus", "categories", "tb", "patients"], "article_id"=>877487, "categories"=>["Biological Sciences"], "users"=>["Jing Wu", "Wei Liu", "Lei He", "Fuli Huang", "Jiazhen Chen", "Peng Cui", "Yaojie Shen", "Jing Zhao", "Wenjie Wang", "Yan Zhang", "Min Zhu", "Wenhong Zhang", "Ying Zhang"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0083445.g005", "stats"=>{"downloads"=>7, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distribution_of_the_most_dominant_genus_in_different_categories_of_TB_patients_versus_healthy_controls_/877487", "title"=>"Distribution of the most dominant genus in different categories of TB patients versus healthy controls.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-12-13 03:08:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/1314709"], "description"=>"<p>(a) Relative abundance at phylum level with more than 0.5% in average in either TB or HC group. (b) Relative abundance of genera with statistical differences between TB patients and HC. *: p<0.05, **: p<0.01, ***: p<0.001. SD: standard deviation.</p>", "links"=>[], "tags"=>["abundance", "microbial", "communities", "tuberculosis", "patients", "controls"], "article_id"=>877486, "categories"=>["Biological Sciences"], "users"=>["Jing Wu", "Wei Liu", "Lei He", "Fuli Huang", "Jiazhen Chen", "Peng Cui", "Yaojie Shen", "Jing Zhao", "Wenjie Wang", "Yan Zhang", "Min Zhu", "Wenhong Zhang", "Ying Zhang"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0083445.g004", "stats"=>{"downloads"=>0, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Mean_relative_abundance_of_microbial_communities_in_tuberculosis_TB_patients_and_healthy_controls_HC_/877486", "title"=>"Mean relative abundance of microbial communities in tuberculosis (TB) patients and healthy controls (HC).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-12-13 03:08:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/1314706"], "description"=>"<p>Samples of N-TB (orange), R-TB (Green), and F-TB (Red) are shown as dots in the plot. F-TB, treatment failure TB; N-TB, new TB; R-TB, recurrent TB; HC, healthy controls.</p>", "links"=>[], "tags"=>["coordinates", "weighted", "unifrac"], "article_id"=>877483, "categories"=>["Biological Sciences"], "users"=>["Jing Wu", "Wei Liu", "Lei He", "Fuli Huang", "Jiazhen Chen", "Peng Cui", "Yaojie Shen", "Jing Zhao", "Wenjie Wang", "Yan Zhang", "Min Zhu", "Wenhong Zhang", "Ying Zhang"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0083445.g002", "stats"=>{"downloads"=>2, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Principal_Coordinates_Analysis_PCoA_plot_based_on_weighted_UniFrac_distance_/877483", "title"=>"Principal Coordinates Analysis (PCoA) plot based on weighted UniFrac distance.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-12-13 03:08:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/1314714"], "description"=>"<p>The ratio of each detected genus to <i>Mycobacterium</i> was calculated, and Mann–Whitney tests were performed between any two groups. Genera with statistical differences were listed. N-TB, new TB patients; R-TB, recurrent TB patients; F-TB treatment failure TB patients.</p>", "links"=>[], "tags"=>["genera"], "article_id"=>877491, "categories"=>["Biological Sciences"], "users"=>["Jing Wu", "Wei Liu", "Lei He", "Fuli Huang", "Jiazhen Chen", "Peng Cui", "Yaojie Shen", "Jing Zhao", "Wenjie Wang", "Yan Zhang", "Min Zhu", "Wenhong Zhang", "Ying Zhang"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0083445.g007", "stats"=>{"downloads"=>1, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_ratio_of_genera_to_Mycobacterium_/877491", "title"=>"The ratio of genera to <i>Mycobacterium</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-12-13 03:08:09"}

PMC Usage Stats | Further Information

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Relative Metric

{"start_date"=>"2013-01-01T00:00:00Z", "end_date"=>"2013-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences", "average_usage"=>[269, 466, 588, 697, 800, 896, 988, 1076, 1165, 1254, 1340, 1417]}, {"subject_area"=>"/Biology and life sciences/Microbiology", "average_usage"=>[293, 503, 638, 755, 861, 960, 1056, 1146, 1239, 1323, 1403, 1491, 1568]}, {"subject_area"=>"/Biology and life sciences/Physiology", "average_usage"=>[256, 449, 572, 676, 775, 866, 955, 1041, 1127, 1213, 1290, 1370, 1437]}, {"subject_area"=>"/Medicine and health sciences", "average_usage"=>[264, 460, 584, 692, 794, 887, 978, 1067, 1154, 1241, 1328, 1408, 1474]}, {"subject_area"=>"/Medicine and health sciences/Infectious diseases", "average_usage"=>[297, 523, 655, 765, 866, 971, 1070, 1159, 1256, 1337, 1424, 1496, 1568]}, {"subject_area"=>"/Medicine and health sciences/Pathology and laboratory medicine", "average_usage"=>[267, 466, 592, 709, 806, 901, 989, 1075, 1162, 1254, 1342, 1424, 1486]}, {"subject_area"=>"/Medicine and health sciences/Physiology", "average_usage"=>[258, 449, 572, 679, 775, 866, 956, 1041, 1124, 1211, 1291, 1371, 1437]}]}
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