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Citrus sinensis Annotation Project (CAP): A Comprehensive Database for Sweet Orange Genome

Publication Date: January 28, 2014
Journal: PLOS ONE
Authors: Jia Wang, Dijun Chen, Yang Lei, Ji Wei Chang, et al
Volume: 9
Issue: 1
Pages: e87723
DOI: https://dx.plos.org/10.1371/journal.pone.0087723
Publisher URL: http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0087723
PubMed: http://www.ncbi.nlm.nih.gov/pubmed/24489955
PubMed Central: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3905029
Europe PMC: http://europepmc.org/abstract/MED/24489955
Web of Science: 000330510000147
Scopus: 84900299345
Mendeley: http://www.mendeley.com/research/citrus-sinensis-annotation-project-cap-comprehensive-database-sweet-orange-genome

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{"title"=>"Citrus sinensis Annotation Project (CAP): A comprehensive database for sweet orange genome", "type"=>"journal", "authors"=>[{"first_name"=>"Jia", "last_name"=>"Wang", "scopus_author_id"=>"56695441400"}, {"first_name"=>"Dijun", "last_name"=>"Chen", "scopus_author_id"=>"35214326400"}, {"first_name"=>"Yang", "last_name"=>"Lei", "scopus_author_id"=>"55697978600"}, {"first_name"=>"Ji Wei", "last_name"=>"Chang", "scopus_author_id"=>"35589382100"}, {"first_name"=>"Bao Hai", "last_name"=>"Hao", "scopus_author_id"=>"55488554700"}, {"first_name"=>"Feng", "last_name"=>"Xing", "scopus_author_id"=>"12774330300"}, {"first_name"=>"Sen", "last_name"=>"Li", "scopus_author_id"=>"55892861600"}, {"first_name"=>"Qiang", "last_name"=>"Xu", "scopus_author_id"=>"55250181400"}, {"first_name"=>"Xiu Xin", "last_name"=>"Deng", "scopus_author_id"=>"7401769133"}, {"first_name"=>"Ling Ling", "last_name"=>"Chen", "scopus_author_id"=>"35226293800"}], "year"=>2014, "source"=>"PLoS ONE", "identifiers"=>{"pmid"=>"24489955", "sgr"=>"84900299345", "doi"=>"10.1371/journal.pone.0087723", "scopus"=>"2-s2.0-84900299345", "pui"=>"373059272", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "issn"=>"19326203"}, "id"=>"fd1a1ba2-66ba-3f4b-8254-3b5f36473767", "abstract"=>"Citrus is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the Citrus production both in fresh fruit and processed juice. We have sequenced the draft genome of a double-haploid sweet orange (C. sinensis cv. Valencia), and constructed the Citrus sinensis annotation project (CAP) to store and visualize the sequenced genomic and transcriptome data. CAP provides GBrowse-based organization of sweet orange genomic data, which integrates ab initio gene prediction, EST, RNA-seq and RNA-paired end tag (RNA-PET) evidence-based gene annotation. Furthermore, we provide a user-friendly web interface to show the predicted protein-protein interactions (PPIs) and metabolic pathways in sweet orange. CAP provides comprehensive information beneficial to the researchers of sweet orange and other woody plants, which is freely available at http://citrus.hzau.edu.cn/.", "link"=>"http://www.mendeley.com/research/citrus-sinensis-annotation-project-cap-comprehensive-database-sweet-orange-genome", "reader_count"=>35, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Student > Doctoral Student"=>2, "Researcher"=>12, "Student > Ph. D. Student"=>12, "Student > Postgraduate"=>2, "Other"=>1, "Student > Master"=>1, "Professor"=>2, "Professor > Associate Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Student > Doctoral Student"=>2, "Researcher"=>12, "Student > Ph. D. Student"=>12, "Student > Postgraduate"=>2, "Other"=>1, "Student > Master"=>1, "Professor"=>2, "Professor > Associate Professor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Biochemistry, Genetics and Molecular Biology"=>3, "Agricultural and Biological Sciences"=>28, "Medicine and Dentistry"=>1, "Engineering"=>1}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>28}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Unspecified"=>{"Unspecified"=>2}}, "reader_count_by_country"=>{"Argentina"=>2, "Brazil"=>1, "Switzerland"=>1}, "group_count"=>0}

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Figshare 3524 Apr 09:40 UTC

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Relative Metric 569010 May 17:44 UTC

Relative Metric

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F1000Prime19 Feb 12:48 UTC

F1000Prime

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