Citrus sinensis Annotation Project (CAP): A Comprehensive Database for Sweet Orange Genome
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{"title"=>"Citrus sinensis Annotation Project (CAP): A comprehensive database for sweet orange genome", "type"=>"journal", "authors"=>[{"first_name"=>"Jia", "last_name"=>"Wang", "scopus_author_id"=>"56695441400"}, {"first_name"=>"Dijun", "last_name"=>"Chen", "scopus_author_id"=>"35214326400"}, {"first_name"=>"Yang", "last_name"=>"Lei", "scopus_author_id"=>"55697978600"}, {"first_name"=>"Ji Wei", "last_name"=>"Chang", "scopus_author_id"=>"35589382100"}, {"first_name"=>"Bao Hai", "last_name"=>"Hao", "scopus_author_id"=>"55488554700"}, {"first_name"=>"Feng", "last_name"=>"Xing", "scopus_author_id"=>"12774330300"}, {"first_name"=>"Sen", "last_name"=>"Li", "scopus_author_id"=>"55892861600"}, {"first_name"=>"Qiang", "last_name"=>"Xu", "scopus_author_id"=>"55250181400"}, {"first_name"=>"Xiu Xin", "last_name"=>"Deng", "scopus_author_id"=>"7401769133"}, {"first_name"=>"Ling Ling", "last_name"=>"Chen", "scopus_author_id"=>"35226293800"}], "year"=>2014, "source"=>"PLoS ONE", "identifiers"=>{"pmid"=>"24489955", "sgr"=>"84900299345", "doi"=>"10.1371/journal.pone.0087723", "scopus"=>"2-s2.0-84900299345", "pui"=>"373059272", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "issn"=>"19326203"}, "id"=>"fd1a1ba2-66ba-3f4b-8254-3b5f36473767", "abstract"=>"Citrus is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the Citrus production both in fresh fruit and processed juice. We have sequenced the draft genome of a double-haploid sweet orange (C. sinensis cv. Valencia), and constructed the Citrus sinensis annotation project (CAP) to store and visualize the sequenced genomic and transcriptome data. CAP provides GBrowse-based organization of sweet orange genomic data, which integrates ab initio gene prediction, EST, RNA-seq and RNA-paired end tag (RNA-PET) evidence-based gene annotation. Furthermore, we provide a user-friendly web interface to show the predicted protein-protein interactions (PPIs) and metabolic pathways in sweet orange. CAP provides comprehensive information beneficial to the researchers of sweet orange and other woody plants, which is freely available at http://citrus.hzau.edu.cn/.", "link"=>"http://www.mendeley.com/research/citrus-sinensis-annotation-project-cap-comprehensive-database-sweet-orange-genome", "reader_count"=>35, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Student > Doctoral Student"=>2, "Researcher"=>12, "Student > Ph. D. Student"=>12, "Student > Postgraduate"=>2, "Other"=>1, "Student > Master"=>1, "Professor"=>2, "Professor > Associate Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Student > Doctoral Student"=>2, "Researcher"=>12, "Student > Ph. D. Student"=>12, "Student > Postgraduate"=>2, "Other"=>1, "Student > Master"=>1, "Professor"=>2, "Professor > Associate Professor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Biochemistry, Genetics and Molecular Biology"=>3, "Agricultural and Biological Sciences"=>28, "Medicine and Dentistry"=>1, "Engineering"=>1}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>28}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Unspecified"=>{"Unspecified"=>2}}, "reader_count_by_country"=>{"Argentina"=>2, "Brazil"=>1, "Switzerland"=>1}, "group_count"=>0}

Scopus | Further Information

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Figshare

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  • {"files"=>["https://ndownloader.figshare.com/files/1364306"], "description"=>"<p>(<b>A</b>) The predicted PPI network of Cs8g02750.1 and Cs4g05680.2. (<b>B</b>) Citrate cycle (TCA cycle) metabolic pathway in sweet orange.</p>", "links"=>[], "tags"=>["crops", "fruits", "Computational biology", "genomics", "Genome analysis tools", "transcriptomes", "Genome databases", "Plant science", "plants", "Plant genomics", "Information technology", "databases", "interactions", "kegg", "pathway"], "article_id"=>916374, "categories"=>["Biological Sciences", "Medicine"], "users"=>["Jia Wang", "Dijun Chen", "Yang Lei", "Ji-Wei Chang", "Bao-Hai Hao", "Feng Xing", "Sen Li", "Qiang Xu", "Xiu-Xin Deng", "Ling-Ling Chen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0087723.g003", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_predicted_protein_interactions_and_KEGG_pathway_in_CAP_/916374", "title"=>"The predicted protein interactions and KEGG pathway in CAP.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-01-28 03:24:54"}
  • {"files"=>["https://ndownloader.figshare.com/files/1364307"], "description"=>"_", "links"=>[], "tags"=>["crops", "fruits", "Computational biology", "genomics", "Genome analysis tools", "transcriptomes", "Genome databases", "Plant science", "plants", "Plant genomics", "Information technology", "databases", "protein-coding", "genes"], "article_id"=>916375, "categories"=>["Biological Sciences", "Medicine"], "users"=>["Jia Wang", "Dijun Chen", "Yang Lei", "Ji-Wei Chang", "Bao-Hai Hao", "Feng Xing", "Sen Li", "Qiang Xu", "Xiu-Xin Deng", "Ling-Ling Chen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0087723.t001", "stats"=>{"downloads"=>2, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Statistics_of_functional_information_for_protein_coding_genes_in_sweet_orange_/916375", "title"=>"Statistics of functional information for protein-coding genes in sweet orange.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-01-28 03:24:54"}

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Relative Metric

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