CiteULike | Further Information

• {"link"=>{"url"=>"http://www.citeulike.org/group/11873/article/12971704"}, "post_time"=>"2014-02-06 07:11:54", "tag"=>["citrus", "database", "genome", "genome_browser", "plant_genomes", "web_resource"], "linkout"=>{"type"=>"DOI", "url"=>"http://dx.doi.org/10.1371/journal.pone.0087723"}, "group"=>"Bioinformatics Core Service", "group_id"=>"11873", "article_id"=>"12971704"}
• {"link"=>{"url"=>"http://www.citeulike.org/user/jforment/article/12971704"}, "post_time"=>"2014-02-06 07:11:54", "tag"=>["citrus", "database", "genome", "genome_browser", "plant_genomes", "web_resource"], "linkout"=>{"type"=>"DOI", "url"=>"http://dx.doi.org/10.1371/journal.pone.0087723"}, "username"=>"jforment", "article_id"=>"12971704"}

Mendeley | Further Information

{"title"=>"Citrus sinensis Annotation Project (CAP): A comprehensive database for sweet orange genome", "type"=>"journal", "authors"=>[{"first_name"=>"Jia", "last_name"=>"Wang", "scopus_author_id"=>"56695441400"}, {"first_name"=>"Dijun", "last_name"=>"Chen", "scopus_author_id"=>"35214326400"}, {"first_name"=>"Yang", "last_name"=>"Lei", "scopus_author_id"=>"55697978600"}, {"first_name"=>"Ji Wei", "last_name"=>"Chang", "scopus_author_id"=>"35589382100"}, {"first_name"=>"Bao Hai", "last_name"=>"Hao", "scopus_author_id"=>"55488554700"}, {"first_name"=>"Feng", "last_name"=>"Xing", "scopus_author_id"=>"12774330300"}, {"first_name"=>"Sen", "last_name"=>"Li", "scopus_author_id"=>"55892861600"}, {"first_name"=>"Qiang", "last_name"=>"Xu", "scopus_author_id"=>"55250181400"}, {"first_name"=>"Xiu Xin", "last_name"=>"Deng", "scopus_author_id"=>"7401769133"}, {"first_name"=>"Ling Ling", "last_name"=>"Chen", "scopus_author_id"=>"35226293800"}], "year"=>2014, "source"=>"PLoS ONE", "identifiers"=>{"pmid"=>"24489955", "sgr"=>"84900299345", "doi"=>"10.1371/journal.pone.0087723", "scopus"=>"2-s2.0-84900299345", "pui"=>"373059272", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "issn"=>"19326203"}, "id"=>"fd1a1ba2-66ba-3f4b-8254-3b5f36473767", "abstract"=>"Citrus is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the Citrus production both in fresh fruit and processed juice. We have sequenced the draft genome of a double-haploid sweet orange (C. sinensis cv. Valencia), and constructed the Citrus sinensis annotation project (CAP) to store and visualize the sequenced genomic and transcriptome data. CAP provides GBrowse-based organization of sweet orange genomic data, which integrates ab initio gene prediction, EST, RNA-seq and RNA-paired end tag (RNA-PET) evidence-based gene annotation. Furthermore, we provide a user-friendly web interface to show the predicted protein-protein interactions (PPIs) and metabolic pathways in sweet orange. CAP provides comprehensive information beneficial to the researchers of sweet orange and other woody plants, which is freely available at http://citrus.hzau.edu.cn/.", "link"=>"http://www.mendeley.com/research/citrus-sinensis-annotation-project-cap-comprehensive-database-sweet-orange-genome", "reader_count"=>35, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Student > Doctoral Student"=>2, "Researcher"=>12, "Student > Ph. D. Student"=>12, "Student > Postgraduate"=>2, "Other"=>1, "Student > Master"=>1, "Professor"=>2, "Professor > Associate Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Student > Doctoral Student"=>2, "Researcher"=>12, "Student > Ph. D. Student"=>12, "Student > Postgraduate"=>2, "Other"=>1, "Student > Master"=>1, "Professor"=>2, "Professor > Associate Professor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Biochemistry, Genetics and Molecular Biology"=>3, "Agricultural and Biological Sciences"=>28, "Medicine and Dentistry"=>1, "Engineering"=>1}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>28}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Unspecified"=>{"Unspecified"=>2}}, "reader_count_by_country"=>{"Argentina"=>2, "Brazil"=>1, "Switzerland"=>1}, "group_count"=>0}

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• http://doi.org/10.1371/journal.pone.0199187
• http://doi.org/10.3390/ijms21249429
• http://doi.org/10.1080/17429145.2019.1609106
• http://doi.org/10.1038/s41438-020-00415-9
• http://doi.org/10.1371/journal.pone.0138786
• http://doi.org/10.3389/fpls.2019.01109
• http://doi.org/10.1093/database/baaa081
• http://doi.org/10.3389/fpls.2017.01481
• http://doi.org/10.1371/journal.pone.0145785
• http://doi.org/10.1007/s00299-019-02393-2
• http://doi.org/10.1016/j.jplph.2018.07.006
• http://doi.org/10.1007/s12298-017-0416-0
• http://doi.org/10.1007/s12041-019-1163-5
• http://doi.org/10.1002/pld3.287
• http://doi.org/10.1371/journal.pone.0176878
• http://doi.org/10.7717/peerj.3343
• http://doi.org/10.1038/s41438-020-0263-y
• http://doi.org/10.1590/1678-4324-2017160474
• http://doi.org/10.1007/s10725-018-0458-5
• http://doi.org/10.1016/j.ijbiomac.2020.02.280
• http://doi.org/10.1371/journal.pone.0112375
• http://doi.org/10.1038/s41438-019-0234-3
• http://doi.org/10.1038/hortres.2015.26
• http://doi.org/10.1371/journal.pone.0223498
• http://doi.org/10.5010/JPB.2015.42.4.326

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Figshare

• {"files"=>["https://ndownloader.figshare.com/files/1364301"], "description"=>"<p>(<b>A</b>) The framework and linked public databases in CAP. (<b>B</b>) The major gene annotation page in CAP, including homologs, functional information, secondary structure and RNA-seq gene expression values in four tissues (callus, leaf, flower and fruit) and three mixtures of these tissues.</p>", "links"=>[], "tags"=>["crops", "fruits", "Computational biology", "genomics", "Genome analysis tools", "transcriptomes", "Genome databases", "Plant science", "plants", "Plant genomics", "Information technology", "databases", "resources"], "article_id"=>916369, "categories"=>["Biological Sciences", "Medicine"], "users"=>["Jia Wang", "Dijun Chen", "Yang Lei", "Ji-Wei Chang", "Bao-Hai Hao", "Feng Xing", "Sen Li", "Qiang Xu", "Xiu-Xin Deng", "Ling-Ling Chen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0087723.g001", "stats"=>{"downloads"=>0, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_related_public_resources_of_CAP_database_and_its_gene_annotation_/916369", "title"=>"The related public resources of CAP database and its gene annotation.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-01-28 03:24:54"}
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Relative Metric

{"start_date"=>"2014-01-01T00:00:00Z", "end_date"=>"2014-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences", "average_usage"=>[291]}, {"subject_area"=>"/Biology and life sciences/Agriculture", "average_usage"=>[282]}, {"subject_area"=>"/Biology and life sciences/Biochemistry", "average_usage"=>[282]}, {"subject_area"=>"/Biology and life sciences/Biotechnology", "average_usage"=>[310, 499]}, {"subject_area"=>"/Computer and information sciences", "average_usage"=>[327, 511]}, {"subject_area"=>"/Computer and information sciences/Computer applications", "average_usage"=>[357, 696, 994, 1141]}]}

F1000Prime