Microgravity Induces Changes in Microsome-Associated Proteins of Arabidopsis Seedlings Grown on Board the International Space Station
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{"title"=>"Microgravity induces changes in microsome-associated proteins of Arabidopsis seedlings grown on board the international space station", "type"=>"journal", "authors"=>[{"first_name"=>"Christian", "last_name"=>"Mazars", "scopus_author_id"=>"6603245482"}, {"first_name"=>"Christian", "last_name"=>"Brière", "scopus_author_id"=>"6603715184"}, {"first_name"=>"Sabine", "last_name"=>"Grat", "scopus_author_id"=>"15072471300"}, {"first_name"=>"Carole", "last_name"=>"Pichereaux", "scopus_author_id"=>"8106410800"}, {"first_name"=>"Michel", "last_name"=>"Rossignol", "scopus_author_id"=>"56212822900"}, {"first_name"=>"Veronica", "last_name"=>"Pereda-Loth", "scopus_author_id"=>"56003324000"}, {"first_name"=>"Brigitte", "last_name"=>"Eche", "scopus_author_id"=>"7801344813"}, {"first_name"=>"Elodie", "last_name"=>"Boucheron-Dubuisson", "scopus_author_id"=>"23975592900"}, {"first_name"=>"Isabel", "last_name"=>"Le Disquet", "scopus_author_id"=>"56003652500"}, {"first_name"=>"Francisco Javier", "last_name"=>"Medina", "scopus_author_id"=>"55318125100"}, {"first_name"=>"Annick", "last_name"=>"Graziana", "scopus_author_id"=>"6603298523"}, {"first_name"=>"Eugénie", "last_name"=>"Carnero-Diaz", "scopus_author_id"=>"6505926280"}], "year"=>2014, "source"=>"PLoS ONE", "identifiers"=>{"scopus"=>"2-s2.0-84897488364", "sgr"=>"84897488364", "issn"=>"19326203", "doi"=>"10.1371/journal.pone.0091814", "pmid"=>"24618597", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pui"=>"372764725"}, "id"=>"3765842f-cd0c-3d78-92cb-4eb22a5bad7e", "abstract"=>"The “GENARA A” experiment was designed to monitor global changes in the proteome of membranes of Arabidopsis thaliana seedlings subjected to microgravity on board the International Space Station (ISS). For this purpose, 12-day-old seedlings were grown either in space, in the European Modular Cultivation System (EMCS) under microgravity or on a 1 g centrifuge, or on the ground. Proteins associated to membranes were selectively extracted from microsomes and identified and quantified through LC-MS-MS using a label-free method. Among the 1484 proteins identified and quantified in the 3 conditions mentioned above, 80 membrane-associated proteins were significantly more abundant in seedlings grown under microgravity in space than under 1 g (space and ground) and 69 were less abundant. Clustering of these proteins according to their predicted function indicates that proteins associated to auxin metabolism and trafficking were depleted in the microsomal fraction in µg space conditions, whereas proteins associated to stress responses, defence and metabolism were more abundant in µg than in 1 g indicating that microgravity is perceived by plants as a stressful environment. These results clearly indicate that a global membrane proteomics approach gives a snapshot of the cell status and its signaling activity in response to microgravity and highlight the major processes affected.", "link"=>"http://www.mendeley.com/research/microgravity-induces-changes-microsomeassociated-proteins-arabidopsis-seedlings-grown-board-internat", "reader_count"=>30, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>5, "Librarian"=>1, "Researcher"=>8, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>7, "Student > Postgraduate"=>1, "Student > Master"=>3, "Student > Bachelor"=>2}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>5, "Librarian"=>1, "Researcher"=>8, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>7, "Student > Postgraduate"=>1, "Student > Master"=>3, "Student > Bachelor"=>2}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Engineering"=>1, "Biochemistry, Genetics and Molecular Biology"=>5, "Agricultural and Biological Sciences"=>20, "Sports and Recreations"=>1, "Physics and Astronomy"=>1, "Computer Science"=>1}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Sports and Recreations"=>{"Sports and Recreations"=>1}, "Physics and Astronomy"=>{"Physics and Astronomy"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>20}, "Computer Science"=>{"Computer Science"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>5}, "Unspecified"=>{"Unspecified"=>1}}, "reader_count_by_country"=>{"Netherlands"=>1, "Russia"=>1}, "group_count"=>0}

Scopus | Further Information

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  • {"files"=>["https://ndownloader.figshare.com/files/1415013"], "description"=>"<p>List of membrane proteins significantly over represented in microgravity conditions on board the ISS.</p>", "links"=>[], "tags"=>["astrobiology", "Extraterrestrial life", "Biochemistry", "proteins", "Plant science", "Plant ecology", "Plant-environment interactions", "Plant biochemistry", "Plant cell biology", "Plant physiology", "proteomics", "Protein abundance", "membrane", "represented", "microgravity"], "article_id"=>957892, "categories"=>["Biological Sciences"], "users"=>["Christian Mazars", "Christian Brière", "Sabine Grat", "Carole Pichereaux", "Michel Rossignol", "Veronica Pereda-Loth", "Brigitte Eche", "Elodie Boucheron-Dubuisson", "Isabel Le Disquet", "Francisco Javier Medina", "Annick Graziana", "Eugénie Carnero-Diaz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0091814.t002", "stats"=>{"downloads"=>1, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_List_of_membrane_proteins_significantly_over_represented_in_microgravity_conditions_on_board_the_ISS_/957892", "title"=>"List of membrane proteins significantly over represented in microgravity conditions on board the ISS.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-03-11 03:01:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/1415014"], "description"=>"<p>List of membrane proteins significantly under-represented in microgravity conditions on board the ISS.</p>", "links"=>[], "tags"=>["astrobiology", "Extraterrestrial life", "Biochemistry", "proteins", "Plant science", "Plant ecology", "Plant-environment interactions", "Plant biochemistry", "Plant cell biology", "Plant physiology", "proteomics", "Protein abundance", "membrane", "under-represented", "microgravity"], "article_id"=>957893, "categories"=>["Biological Sciences"], "users"=>["Christian Mazars", "Christian Brière", "Sabine Grat", "Carole Pichereaux", "Michel Rossignol", "Veronica Pereda-Loth", "Brigitte Eche", "Elodie Boucheron-Dubuisson", "Isabel Le Disquet", "Francisco Javier Medina", "Annick Graziana", "Eugénie Carnero-Diaz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0091814.t001", "stats"=>{"downloads"=>0, "page_views"=>15, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_List_of_membrane_proteins_significantly_under_represented_in_microgravity_conditions_on_board_the_ISS_/957893", "title"=>"List of membrane proteins significantly under-represented in microgravity conditions on board the ISS.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-03-11 03:01:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/1415017", "https://ndownloader.figshare.com/files/1415018", "https://ndownloader.figshare.com/files/1415019", "https://ndownloader.figshare.com/files/1415020", "https://ndownloader.figshare.com/files/1415021", "https://ndownloader.figshare.com/files/1415022", "https://ndownloader.figshare.com/files/1415023", "https://ndownloader.figshare.com/files/1415024", "https://ndownloader.figshare.com/files/1415025", "https://ndownloader.figshare.com/files/1415026"], "description"=>"<div><p>The “GENARA A” experiment was designed to monitor global changes in the proteome of membranes of <i>Arabidopsis thaliana</i> seedlings subjected to microgravity on board the International Space Station (ISS). For this purpose, 12-day-old seedlings were grown either in space, in the European Modular Cultivation System (EMCS) under microgravity or on a 1 g centrifuge, or on the ground. Proteins associated to membranes were selectively extracted from microsomes and identified and quantified through LC-MS-MS using a label-free method. Among the 1484 proteins identified and quantified in the 3 conditions mentioned above, 80 membrane-associated proteins were significantly more abundant in seedlings grown under microgravity in space than under 1 g (space and ground) and 69 were less abundant. Clustering of these proteins according to their predicted function indicates that proteins associated to auxin metabolism and trafficking were depleted in the microsomal fraction in µg space conditions, whereas proteins associated to stress responses, defence and metabolism were more abundant in µg than in 1 g indicating that microgravity is perceived by plants as a stressful environment. These results clearly indicate that a global membrane proteomics approach gives a snapshot of the cell status and its signaling activity in response to microgravity and highlight the major processes affected.</p></div>", "links"=>[], "tags"=>["astrobiology", "Extraterrestrial life", "Biochemistry", "proteins", "Plant science", "Plant ecology", "Plant-environment interactions", "Plant biochemistry", "Plant cell biology", "Plant physiology", "proteomics", "Protein abundance", "microsome-associated", "arabidopsis", "seedlings", "grown"], "article_id"=>957896, "categories"=>["Biological Sciences"], "users"=>["Christian Mazars", "Christian Brière", "Sabine Grat", "Carole Pichereaux", "Michel Rossignol", "Veronica Pereda-Loth", "Brigitte Eche", "Elodie Boucheron-Dubuisson", "Isabel Le Disquet", "Francisco Javier Medina", "Annick Graziana", "Eugénie Carnero-Diaz"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0091814.s001", "https://dx.doi.org/10.1371/journal.pone.0091814.s002", "https://dx.doi.org/10.1371/journal.pone.0091814.s003", "https://dx.doi.org/10.1371/journal.pone.0091814.s004", "https://dx.doi.org/10.1371/journal.pone.0091814.s005", "https://dx.doi.org/10.1371/journal.pone.0091814.s006", "https://dx.doi.org/10.1371/journal.pone.0091814.s007", "https://dx.doi.org/10.1371/journal.pone.0091814.s008", "https://dx.doi.org/10.1371/journal.pone.0091814.s009", "https://dx.doi.org/10.1371/journal.pone.0091814.s010"], "stats"=>{"downloads"=>10, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Microgravity_Induces_Changes_in_Microsome_Associated_Proteins_of_Arabidopsis_Seedlings_Grown_on_Board_the_International_Space_Station_/957896", "title"=>"Microgravity Induces Changes in Microsome-Associated Proteins of Arabidopsis Seedlings Grown on Board the International Space Station", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2014-03-11 03:01:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/1414998"], "description"=>"<p>(A, C) View of a culture chamber, B. View of an experiment container housing four culture chambers. The grey part on the scheme corresponds to the filter pad with a nylon mesh sewed on top (A). Empty culture chamber (C-left) and closed culture chamber with the Biofoil (C-right). (Adapted from the Space Biology Product Catalog of ASTRIUM company).</p>", "links"=>[], "tags"=>["astrobiology", "Extraterrestrial life", "Biochemistry", "proteins", "Plant science", "Plant ecology", "Plant-environment interactions", "Plant biochemistry", "Plant cell biology", "Plant physiology", "proteomics", "Protein abundance", "views", "genara-a"], "article_id"=>957877, "categories"=>["Biological Sciences"], "users"=>["Christian Mazars", "Christian Brière", "Sabine Grat", "Carole Pichereaux", "Michel Rossignol", "Veronica Pereda-Loth", "Brigitte Eche", "Elodie Boucheron-Dubuisson", "Isabel Le Disquet", "Francisco Javier Medina", "Annick Graziana", "Eugénie Carnero-Diaz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0091814.g001", "stats"=>{"downloads"=>0, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Design_and_views_of_the_culture_chamber_and_of_the_experiment_container_used_during_the_GENARA_A_experiment_/957877", "title"=>"Design and views of the culture chamber and of the experiment container used during the GENARA-A experiment.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-03-11 03:01:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/1415000"], "description"=>"<p>Schematic view of the experiment scenario of Arabidopsis culture on board the ISS.</p>", "links"=>[], "tags"=>["astrobiology", "Extraterrestrial life", "Biochemistry", "proteins", "Plant science", "Plant ecology", "Plant-environment interactions", "Plant biochemistry", "Plant cell biology", "Plant physiology", "proteomics", "Protein abundance", "arabidopsis"], "article_id"=>957879, "categories"=>["Biological Sciences"], "users"=>["Christian Mazars", "Christian Brière", "Sabine Grat", "Carole Pichereaux", "Michel Rossignol", "Veronica Pereda-Loth", "Brigitte Eche", "Elodie Boucheron-Dubuisson", "Isabel Le Disquet", "Francisco Javier Medina", "Annick Graziana", "Eugénie Carnero-Diaz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0091814.g002", "stats"=>{"downloads"=>1, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Schematic_view_of_the_experiment_scenario_of_Arabidopsis_culture_on_board_the_ISS_/957879", "title"=>"Schematic view of the experiment scenario of Arabidopsis culture on board the ISS.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-03-11 03:01:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/1415002"], "description"=>"<p><sup>1</sup> Volumes of buffer are expressed as µl per mg of initial fresh material used. * Centrifugation 100 000 g, 20 min; ** Centrifugation 15 000 g 15 min.</p>", "links"=>[], "tags"=>["astrobiology", "Extraterrestrial life", "Biochemistry", "proteins", "Plant science", "Plant ecology", "Plant-environment interactions", "Plant biochemistry", "Plant cell biology", "Plant physiology", "proteomics", "Protein abundance", "microsome", "sequential", "extraction", "salts"], "article_id"=>957881, "categories"=>["Biological Sciences"], "users"=>["Christian Mazars", "Christian Brière", "Sabine Grat", "Carole Pichereaux", "Michel Rossignol", "Veronica Pereda-Loth", "Brigitte Eche", "Elodie Boucheron-Dubuisson", "Isabel Le Disquet", "Francisco Javier Medina", "Annick Graziana", "Eugénie Carnero-Diaz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0091814.g003", "stats"=>{"downloads"=>3, "page_views"=>18, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Workflow_of_microsome_preparation_and_sequential_extraction_of_proteins_with_salts_and_detergents_/957881", "title"=>"Workflow of microsome preparation and sequential extraction of proteins with salts and detergents.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-03-11 03:01:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/1415003"], "description"=>"<p>A. Number of proteins, B. Number of corresponding sequenced peptides from microsomal samples isolated from seedlings grown on board the ISS in microgravity (i), 1 g on centrifuge (ii) or 1 g on Earth (iii). Total number of proteins identified is 3861 and total number of corresponding peptides is 13 708.</p>", "links"=>[], "tags"=>["astrobiology", "Extraterrestrial life", "Biochemistry", "proteins", "Plant science", "Plant ecology", "Plant-environment interactions", "Plant biochemistry", "Plant cell biology", "Plant physiology", "proteomics", "Protein abundance", "diagrams"], "article_id"=>957882, "categories"=>["Biological Sciences"], "users"=>["Christian Mazars", "Christian Brière", "Sabine Grat", "Carole Pichereaux", "Michel Rossignol", "Veronica Pereda-Loth", "Brigitte Eche", "Elodie Boucheron-Dubuisson", "Isabel Le Disquet", "Francisco Javier Medina", "Annick Graziana", "Eugénie Carnero-Diaz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0091814.g004", "stats"=>{"downloads"=>2, "page_views"=>23, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Venn_diagrams_of_proteins_identified_on_the_basis_of_at_least_two_peptides_/957882", "title"=>"Venn diagrams of proteins identified on the basis of at least two peptides.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-03-11 03:01:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/1415005"], "description"=>"<p>Blue bars indicate the total number of proteins identified. Red bars show the number of proteins with at least one transmembrane segment and the green bars the number of proteins which are annotated as “membrane” in Gene Ontology (The number of proteins is indicated at the top of the bars).</p>", "links"=>[], "tags"=>["astrobiology", "Extraterrestrial life", "Biochemistry", "proteins", "Plant science", "Plant ecology", "Plant-environment interactions", "Plant biochemistry", "Plant cell biology", "Plant physiology", "proteomics", "Protein abundance", "extraction"], "article_id"=>957884, "categories"=>["Biological Sciences"], "users"=>["Christian Mazars", "Christian Brière", "Sabine Grat", "Carole Pichereaux", "Michel Rossignol", "Veronica Pereda-Loth", "Brigitte Eche", "Elodie Boucheron-Dubuisson", "Isabel Le Disquet", "Francisco Javier Medina", "Annick Graziana", "Eugénie Carnero-Diaz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0091814.g005", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Proteins_specifically_identified_in_one_extraction_fraction_and_common_to_the_three_gravity_conditions_i_e_1_g_ground_1_g_space_and_181_g_space_/957884", "title"=>"Proteins specifically identified in one extraction fraction and common to the three gravity conditions (i.e. 1 g ground, 1 g space and µg space).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-03-11 03:01:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/1415007"], "description"=>"<p>Distribution according their putative functions of the 69 proteins under-represented in microgravity (percentage of the total).</p>", "links"=>[], "tags"=>["astrobiology", "Extraterrestrial life", "Biochemistry", "proteins", "Plant science", "Plant ecology", "Plant-environment interactions", "Plant biochemistry", "Plant cell biology", "Plant physiology", "proteomics", "Protein abundance", "putative", "functions", "69", "under-represented", "microgravity"], "article_id"=>957886, "categories"=>["Biological Sciences"], "users"=>["Christian Mazars", "Christian Brière", "Sabine Grat", "Carole Pichereaux", "Michel Rossignol", "Veronica Pereda-Loth", "Brigitte Eche", "Elodie Boucheron-Dubuisson", "Isabel Le Disquet", "Francisco Javier Medina", "Annick Graziana", "Eugénie Carnero-Diaz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0091814.g006", "stats"=>{"downloads"=>1, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distribution_according_their_putative_functions_of_the_69_proteins_under_represented_in_microgravity_percentage_of_the_total_/957886", "title"=>"Distribution according their putative functions of the 69 proteins under-represented in microgravity (percentage of the total).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-03-11 03:01:30"}

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Relative Metric

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