Sheltering Behavior and Locomotor Activity in 11 Genetically Diverse Common Inbred Mouse Strains Using Home-Cage Monitoring
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{"title"=>"Sheltering behavior and locomotor activity in 11 genetically diverse common inbred mouse strains using home-cage monitoring", "type"=>"journal", "authors"=>[{"first_name"=>"Maarten", "last_name"=>"Loos", "scopus_author_id"=>"19933948200"}, {"first_name"=>"Bastijn", "last_name"=>"Koopmans", "scopus_author_id"=>"55325755800"}, {"first_name"=>"Emmeke", "last_name"=>"Aarts", "scopus_author_id"=>"55325725600"}, {"first_name"=>"Gregoire", "last_name"=>"Maroteaux", "scopus_author_id"=>"26029986800"}, {"first_name"=>"Sophie", "last_name"=>"Van Der Sluis", "scopus_author_id"=>"23053013200"}, {"first_name"=>"Matthijs", "last_name"=>"Verhage", "scopus_author_id"=>"7004678763"}, {"first_name"=>"August B.", "last_name"=>"Smit", "scopus_author_id"=>"54931364200"}, {"first_name"=>"A. B.", "last_name"=>"Brussaard", "scopus_author_id"=>"7003346217"}, {"first_name"=>"J. G.", "last_name"=>"Borst", "scopus_author_id"=>"57192935575"}, {"first_name"=>"Y.", "last_name"=>"Elgersma", "scopus_author_id"=>"6603745650"}, {"first_name"=>"N.", "last_name"=>"Galjart", "scopus_author_id"=>"6701661674"}, {"first_name"=>"G. T.", "last_name"=>"Van Der Horst", "scopus_author_id"=>"35433123800"}, {"first_name"=>"C. N.", "last_name"=>"Levelt", "scopus_author_id"=>"6603957447"}, {"first_name"=>"C. M.", "last_name"=>"Pennartz", "scopus_author_id"=>"7003645919"}, {"first_name"=>"A. B.", "last_name"=>"Smit", "scopus_author_id"=>"13310353000"}, {"first_name"=>"B. M.", "last_name"=>"Spruijt", "scopus_author_id"=>"35466990500"}, {"first_name"=>"M.", "last_name"=>"Verhage", "scopus_author_id"=>"56374592100"}, {"first_name"=>"C. I.", "last_name"=>"De Zeeuw", "scopus_author_id"=>"35444285700"}], "year"=>2014, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "scopus"=>"2-s2.0-84907486863", "sgr"=>"84907486863", "pui"=>"600074419", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pmid"=>"25264768", "doi"=>"10.1371/journal.pone.0108563"}, "id"=>"3d0fbff7-f3bb-394f-b36e-e9e59c508af8", "abstract"=>"Functional genetic analyses in mice rely on efficient and in-depth characterization of the behavioral spectrum. Automated home-cage observation can provide a systematic and efficient screening method to detect unexplored, novel behavioral phenotypes. Here, we analyzed high-throughput automated home-cage data using existing and novel concepts, to detect a plethora of genetic differences in spontaneous behavior in a panel of commonly used inbred strains (129S1/SvImJ, A/J, C3H/HeJ, C57BL/6J, BALB/cJ, DBA/2J, NOD/LtJ, FVB/NJ, WSB/EiJ, PWK/PhJ and CAST/EiJ). Continuous video-tracking observations of sheltering behavior and locomotor activity were segmented into distinguishable behavioral elements, and studied at different time scales, yielding a set of 115 behavioral parameters of which 105 showed highly significant strain differences. This set of 115 parameters was highly dimensional; principal component analysis identified 26 orthogonal components with eigenvalues above one. Especially novel parameters of sheltering behavior and parameters describing aspects of motion of the mouse in the home-cage showed high genetic effect sizes. Multi-day habituation curves and patterns of behavior surrounding dark/light phase transitions showed striking strain differences, albeit with lower genetic effect sizes. This spontaneous home-cage behavior study demonstrates high dimensionality, with a strong genetic contribution to specific sets of behavioral measures. Importantly, spontaneous home-cage behavior analysis detects genetic effects that cannot be studied in conventional behavioral tests, showing that the inclusion of a few days of undisturbed, labor extensive home-cage assessment may greatly aid gene function analyses and drug target discovery.", "link"=>"http://www.mendeley.com/research/sheltering-behavior-locomotor-activity-11-genetically-diverse-common-inbred-mouse-strains-using-home", "reader_count"=>37, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>3, "Researcher"=>10, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>15, "Student > Master"=>6, "Professor"=>1, "Unspecified"=>1}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>3, "Researcher"=>10, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>15, "Student > Master"=>6, "Professor"=>1, "Unspecified"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Engineering"=>1, "Biochemistry, Genetics and Molecular Biology"=>2, "Mathematics"=>1, "Agricultural and Biological Sciences"=>23, "Neuroscience"=>4, "Veterinary Science and Veterinary Medicine"=>1, "Psychology"=>3}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Neuroscience"=>{"Neuroscience"=>4}, "Psychology"=>{"Psychology"=>3}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>23}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>2}, "Mathematics"=>{"Mathematics"=>1}, "Unspecified"=>{"Unspecified"=>2}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>1}}, "reader_count_by_country"=>{"Netherlands"=>1, "United States"=>1, "United Kingdom"=>1, "France"=>1, "Bulgaria"=>1}, "group_count"=>4}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/1695873"], "description"=>"<p><b>a</b>) The distance moved by the center of gravity of a mouse during four 20 s segments is plotted, exemplifying arrest (red) and move (blue) segments. <b>b</b>) The length (log<sub>2</sub> transformed) of all move segments during 3 days was calculated for each individual mouse, and strain averages were plotted as a histogram. The inset shows how, for a representative C57BL/6J mouse, 2 different classes of moving segments could be dissociated by the intersection of 2 Gaussians that were fitted to the distance distribution of moving segments. <b>c</b>) The duration (log<sub>2</sub> transformed) of all arrest segments durations during 3 days was calculated for each individual mouse, and strain averages were plotted as a histogram. The inset shows how, for a representative C57BL/6J mouse, brief and long arrest segments were defined by an arbitrary threshold at the 90<sup>th</sup> percentile of arrest durations. <b>d</b>) Visualizing a segmented track shows that short movements and long arrest occur in feeding and drinking zones. Brief arrests occur in between two long move segments, as well as in between short movements. Significant strain differences were observed in move and arrest measures, such as the <b>e</b>) long movement threshold <b>f</b>) long movement maximum velocity <b>g</b>) long arrest threshold and <b>h</b>) mean long arrest duration during the third dark phase. <b>i</b>) The duration (log<sub>2</sub> transformed) of each shelter visit during 3 days was recorded for each individual mouse and strain averages were plotted as a histogram. The inset shows how, for a representative C57BL/6J mouse, the shelter visit distribution can be approximated by fitting 3 Gaussian curves. The intercept between the 2<sup>nd</sup> and 3<sup>rd</sup> Gaussian was taken as individually determined threshold to recognize long shelter visits. To separate brief shelter visits from other shelter visit classes a cut off duration was defined at the 90<sup>th</sup> percentile of the first fitted Gaussian. Strain differences were detected in sheltering measures, such as the <b>j</b>) long (left axis) and short (right axis) shelter visit threshold, <b>k</b>) cumulative long shelter visit duration per 24-hour (grey part of bars represents dark phase) and <b>l</b>) the mean long visit duration.</p>", "links"=>[], "tags"=>["26 orthogonal components", "fvb", "dba", "drug target discovery", "3h", "57BL", "nod", "effect sizes", "11 Genetically Diverse Common Inbred Mouse Strains", "gene function analyses", "strain differences", "balb", "wsb", "parameter", "pwk"], "article_id"=>1186554, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Maarten Loos", "Bastijn Koopmans", "Emmeke Aarts", "Gregoire Maroteaux", "Sophie van der Sluis", "Matthijs Verhage", "August B. Smit"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0108563.g001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Segmentation_of_move_arrest_and_sheltering_behavior_/1186554", "title"=>"Segmentation of move, arrest and sheltering behavior.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-09-29 03:20:14"}
  • {"files"=>["https://ndownloader.figshare.com/files/1695874"], "description"=>"<p>Strain differences were observed in activity bout characteristics, such as <b>a</b>) the mean duration of an activity bout during the dark phase and <b>b</b>) the number of activity bouts during the dark phase and <b>c</b>) the number of jumps onto the shelter.</p>", "links"=>[], "tags"=>["26 orthogonal components", "fvb", "dba", "drug target discovery", "3h", "57BL", "nod", "effect sizes", "11 Genetically Diverse Common Inbred Mouse Strains", "gene function analyses", "strain differences", "balb", "wsb", "parameter", "pwk"], "article_id"=>1186555, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Maarten Loos", "Bastijn Koopmans", "Emmeke Aarts", "Gregoire Maroteaux", "Sophie van der Sluis", "Matthijs Verhage", "August B. Smit"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0108563.g002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Activity_bouts_/1186555", "title"=>"Activity bouts.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-09-29 03:20:14"}
  • {"files"=>["https://ndownloader.figshare.com/files/1695878"], "description"=>"<p>During the three days in the home-cage environment, the strains showed different patterns with respect to multiday habituation (different line colors representing different days), differences between the proportions of activity during the dark (grey background) versus light (white background) phase, changes in activity during the hours surrounding the dark/light phase transitions.</p>", "links"=>[], "tags"=>["26 orthogonal components", "fvb", "dba", "drug target discovery", "3h", "57BL", "nod", "effect sizes", "11 Genetically Diverse Common Inbred Mouse Strains", "gene function analyses", "strain differences", "balb", "wsb", "parameter", "pwk"], "article_id"=>1186559, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Maarten Loos", "Bastijn Koopmans", "Emmeke Aarts", "Gregoire Maroteaux", "Sophie van der Sluis", "Matthijs Verhage", "August B. Smit"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0108563.g003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Strain_specific_patterns_of_home_cage_activity_/1186559", "title"=>"Strain-specific patterns of home-cage activity.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-09-29 03:20:14"}
  • {"files"=>["https://ndownloader.figshare.com/files/1695882"], "description"=>"<p><b>a–b</b>) The habituation effect across three days, in terms of the fold change from day 1 towards day 3 is plotted for dark (a) and light (b) phase. <b>c</b>) All strains have an activity duration DarkLight index above 0.5, i.e. representing more activity during the dark phase, however, substantial strain differences in this index were found.</p>", "links"=>[], "tags"=>["26 orthogonal components", "fvb", "dba", "drug target discovery", "3h", "57BL", "nod", "effect sizes", "11 Genetically Diverse Common Inbred Mouse Strains", "gene function analyses", "strain differences", "balb", "wsb", "parameter", "pwk"], "article_id"=>1186563, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Maarten Loos", "Bastijn Koopmans", "Emmeke Aarts", "Gregoire Maroteaux", "Sophie van der Sluis", "Matthijs Verhage", "August B. Smit"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0108563.g004"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Habituation_during_the_first_three_days_and_the_effect_of_Light_Dark_phase_/1186563", "title"=>"Habituation during the first three days and the effect of Light/Dark phase.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-09-29 03:20:14"}
  • {"files"=>["https://ndownloader.figshare.com/files/1695887"], "description"=>"<p>Activity patterns were analyzed in terms of the change (slope) in the proportion of time active (activity proportion) in the few hours preceding and following the shift in light phase, and defined as the <b>a</b>) anticipation of the light phase, <b>b</b>) response to the start of the light phase, <b>c</b>) anticipation of the dark phase, <b>d</b>) response to the start of the dark phase. Each of these four slopes (i.e. change in activity proportion) showed significant strain differences (<b>e–h</b>).</p>", "links"=>[], "tags"=>["26 orthogonal components", "fvb", "dba", "drug target discovery", "3h", "57BL", "nod", "effect sizes", "11 Genetically Diverse Common Inbred Mouse Strains", "gene function analyses", "strain differences", "balb", "wsb", "parameter", "pwk"], "article_id"=>1186568, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Maarten Loos", "Bastijn Koopmans", "Emmeke Aarts", "Gregoire Maroteaux", "Sophie van der Sluis", "Matthijs Verhage", "August B. Smit"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0108563.g005"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Anticipation_of_8211_and_response_to_8211_phase_transitions_/1186568", "title"=>"Anticipation of – and response to – phase transitions.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-09-29 03:20:14"}
  • {"files"=>["https://ndownloader.figshare.com/files/1695888"], "description"=>"<p><b>a</b>) A histogram of the number of pairwise correlations among 115 parameters, with a particular shared genetic variance. <b>b</b>) The genetic effect size for each of the 115 parameter (bullets, with 20 key parameters grey filled) was calculated, and grouped per behavioral domain. The vertical mark represents the average genetic effect size of a category.</p>", "links"=>[], "tags"=>["26 orthogonal components", "fvb", "dba", "drug target discovery", "3h", "57BL", "nod", "effect sizes", "11 Genetically Diverse Common Inbred Mouse Strains", "gene function analyses", "strain differences", "balb", "wsb", "parameter", "pwk"], "article_id"=>1186569, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Maarten Loos", "Bastijn Koopmans", "Emmeke Aarts", "Gregoire Maroteaux", "Sophie van der Sluis", "Matthijs Verhage", "August B. Smit"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0108563.g006"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Genetic_influences_on_spontaneous_home_cage_behavior_/1186569", "title"=>"Genetic influences on spontaneous home-cage behavior.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-09-29 03:20:14"}
  • {"files"=>["https://ndownloader.figshare.com/files/1695889", "https://ndownloader.figshare.com/files/1695890", "https://ndownloader.figshare.com/files/1695891", "https://ndownloader.figshare.com/files/1695892"], "description"=>"<div><p>Functional genetic analyses in mice rely on efficient and in-depth characterization of the behavioral spectrum. Automated home-cage observation can provide a systematic and efficient screening method to detect unexplored, novel behavioral phenotypes. Here, we analyzed high-throughput automated home-cage data using existing and novel concepts, to detect a plethora of genetic differences in spontaneous behavior in a panel of commonly used inbred strains (129S1/SvImJ, A/J, C3H/HeJ, C57BL/6J, BALB/cJ, DBA/2J, NOD/LtJ, FVB/NJ, WSB/EiJ, PWK/PhJ and CAST/EiJ). Continuous video-tracking observations of sheltering behavior and locomotor activity were segmented into distinguishable behavioral elements, and studied at different time scales, yielding a set of 115 behavioral parameters of which 105 showed highly significant strain differences. This set of 115 parameters was highly dimensional; principal component analysis identified 26 orthogonal components with eigenvalues above one. Especially novel parameters of sheltering behavior and parameters describing aspects of motion of the mouse in the home-cage showed high genetic effect sizes. Multi-day habituation curves and patterns of behavior surrounding dark/light phase transitions showed striking strain differences, albeit with lower genetic effect sizes. This spontaneous home-cage behavior study demonstrates high dimensionality, with a strong genetic contribution to specific sets of behavioral measures. Importantly, spontaneous home-cage behavior analysis detects genetic effects that cannot be studied in conventional behavioral tests, showing that the inclusion of a few days of undisturbed, labor extensive home-cage assessment may greatly aid gene function analyses and drug target discovery.</p></div>", "links"=>[], "tags"=>["26 orthogonal components", "fvb", "dba", "drug target discovery", "3h", "57BL", "nod", "effect sizes", "11 Genetically Diverse Common Inbred Mouse Strains", "gene function analyses", "strain differences", "balb", "wsb", "parameter", "pwk"], "article_id"=>1186570, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Maarten Loos", "Bastijn Koopmans", "Emmeke Aarts", "Gregoire Maroteaux", "Sophie van der Sluis", "Matthijs Verhage", "August B. Smit"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0108563.s001", "https://dx.doi.org/10.1371/journal.pone.0108563.s002", "https://dx.doi.org/10.1371/journal.pone.0108563.s003", "https://dx.doi.org/10.1371/journal.pone.0108563.s004"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Sheltering_Behavior_and_Locomotor_Activity_in_11_Genetically_Diverse_Common_Inbred_Mouse_Strains_Using_Home_Cage_Monitoring_/1186570", "title"=>"Sheltering Behavior and Locomotor Activity in 11 Genetically Diverse Common Inbred Mouse Strains Using Home-Cage Monitoring", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2014-09-29 03:20:14"}

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