Normal and Functional TP53 in Genetically Stable Myxoid/Round Cell Liposarcoma
Publication Date
November 13, 2014
Journal
PLOS ONE
Authors
Anders Ståhlberg, Christina Kåbjörn Gustafsson, Katarina Engtröm, Christer Thomsen, et al
Volume
9
Issue
11
Pages
e113110
DOI
https://dx.plos.org/10.1371/journal.pone.0113110
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0113110
PubMed
http://www.ncbi.nlm.nih.gov/pubmed/25393000
PubMed Central
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4231113
Europe PMC
http://europepmc.org/abstract/MED/25393000
Web of Science
000347709300143
Scopus
84911478681
Mendeley
http://www.mendeley.com/research/normal-functional-tp53-genetically-stable-myxoidround-cell-liposarcoma
Events
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Mendeley | Further Information

{"title"=>"Normal and functional TP53 in genetically stable myxoid/round cell liposarcoma", "type"=>"journal", "authors"=>[{"first_name"=>"Anders", "last_name"=>"Sta˚hlberg", "scopus_author_id"=>"56423788400"}, {"first_name"=>"Christina Ka˚björn", "last_name"=>"Gustafsson", "scopus_author_id"=>"56423406200"}, {"first_name"=>"Katarina", "last_name"=>"Engtröm", "scopus_author_id"=>"56263581300"}, {"first_name"=>"Christer", "last_name"=>"Thomsen", "scopus_author_id"=>"54903493000"}, {"first_name"=>"Soheila", "last_name"=>"Dolatabadi", "scopus_author_id"=>"56423584900"}, {"first_name"=>"Emma", "last_name"=>"Jonasson", "scopus_author_id"=>"56423591700"}, {"first_name"=>"Chieh Yuan", "last_name"=>"Li", "scopus_author_id"=>"56422761200"}, {"first_name"=>"David", "last_name"=>"Ruff", "scopus_author_id"=>"7004189109"}, {"first_name"=>"Shiaw Min", "last_name"=>"Chen", "scopus_author_id"=>"57039364800"}, {"first_name"=>"Pierre", "last_name"=>"A˚man", "scopus_author_id"=>"56423683300"}], "year"=>2014, "source"=>"PLoS ONE", "identifiers"=>{"pmid"=>"25393000", "doi"=>"10.1371/journal.pone.0113110", "sgr"=>"84911478681", "scopus"=>"2-s2.0-84911478681", "issn"=>"19326203", "pui"=>"600506699"}, "id"=>"8d29eafd-c021-3f61-9ac9-7b89fe919da2", "abstract"=>"Myxoid/round-cell liposarcoma (MLS/RCLS) is characterized by either the fusion gene FUS-DDIT3 or the less commonly occurring EWSR1-DDIT3 and most cases carry few or no additional cytogenetic changes. There are conflicting reports concerning the status and role of TP53 in MLS/RCLS. Here we analysed four MLS/RCLS derived cell lines for TP53 mutations, expression and function. Three SV40 transformed cell lines expressed normal TP53 proteins. Irradiation caused normal posttranslational modifications of TP53 and induced P21 expression in two of these cell lines. Transfection experiments showed that the FUS-DDIT3 fusion protein had no effects on irradiation induced TP53 responses. Ion Torrent AmpliSeq screening, using the Cancer Hotspot panel, showed no dysfunctional or disease associated alleles/mutations. In conclusion, our results suggest that most MLS/RCLS cases carry functional TP53 genes and this is consistent with the low numbers of secondary mutations observed in this tumor entity.", "link"=>"http://www.mendeley.com/research/normal-functional-tp53-genetically-stable-myxoidround-cell-liposarcoma", "reader_count"=>15, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Student > Doctoral Student"=>2, "Researcher"=>3, "Student > Ph. D. Student"=>1, "Student > Postgraduate"=>2, "Student > Master"=>2, "Student > Bachelor"=>4}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Student > Doctoral Student"=>2, "Researcher"=>3, "Student > Ph. D. Student"=>1, "Student > Postgraduate"=>2, "Student > Master"=>2, "Student > Bachelor"=>4}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Biochemistry, Genetics and Molecular Biology"=>3, "Medicine and Dentistry"=>4, "Agricultural and Biological Sciences"=>7}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>4}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>7}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Unspecified"=>{"Unspecified"=>1}}, "reader_count_by_country"=>{"Spain"=>1}, "group_count"=>0}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/1793042"], "description"=>"<p>All variations are single nucleotide polymorphisms.</p>1<p>Genomic location at respective chromosome using hg19 genome sequence.</p>2<p>Codon change within the reading frame of respective gene.</p>3<p>Amino acid change due to the observed polymorphism. Both detected polymorphisms are normal and commonly occurring variants.</p>4<p>Cosmic annotated mutations with corresponding ID are indicated.</p>5<p>Variant observed. For example, for MLS1765-92 and <i>TP53</i> (Het, G/C, C) data indicate that the observed variation (“C”) is heterozygote, while the reference nucleotide is “G”. Note that the codon change for <i>TP53</i> is CCC>CGC, since the gene is located at the minus DNA strand. Het, heterozygote; Hom, homozygote.</p><p>Sequence variations in MLS cell lines.</p>", "links"=>[], "tags"=>["EWSR", "TP 53 proteins", "sv", "ion Torrent AmpliSeq screening", "TP 53 genes", "TP 53 mutations", "P 21 expression", "Functional TP 53", "mls", "TP 53 responses", "Cancer Hotspot panel", "TP 53", "Cell lines"], "article_id"=>1240408, "categories"=>["Biological Sciences"], "users"=>["Anders Ståhlberg", "Christina Kåbjörn Gustafsson", "Katarina Engtröm", "Christer Thomsen", "Soheila Dolatabadi", "Emma Jonasson", "Chieh-Yuan Li", "David Ruff", "Shiaw-Min Chen", "Pierre Åman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0113110.t002", "stats"=>{"downloads"=>14, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Sequence_variations_in_MLS_cell_lines_/1240408", "title"=>"Sequence variations in MLS cell lines.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-11-13 03:46:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/1793044", "https://ndownloader.figshare.com/files/1793046"], "description"=>"<div><p>Myxoid/round-cell liposarcoma (MLS/RCLS) is characterized by either the fusion gene <i>FUS-DDIT3</i> or the less commonly occurring <i>EWSR1-DDIT3</i> and most cases carry few or no additional cytogenetic changes. There are conflicting reports concerning the status and role of TP53 in MLS/RCLS. Here we analysed four MLS/RCLS derived cell lines for <i>TP53</i> mutations, expression and function. Three SV40 transformed cell lines expressed normal TP53 proteins. Irradiation caused normal posttranslational modifications of TP53 and induced P21 expression in two of these cell lines. Transfection experiments showed that the FUS-DDIT3 fusion protein had no effects on irradiation induced TP53 responses. Ion Torrent AmpliSeq screening, using the Cancer Hotspot panel, showed no dysfunctional or disease associated alleles/mutations. In conclusion, our results suggest that most MLS/RCLS cases carry functional TP53 genes and this is consistent with the low numbers of secondary mutations observed in this tumor entity.</p></div>", "links"=>[], "tags"=>["EWSR", "TP 53 proteins", "sv", "ion Torrent AmpliSeq screening", "TP 53 genes", "TP 53 mutations", "P 21 expression", "Functional TP 53", "mls", "TP 53 responses", "Cancer Hotspot panel", "TP 53", "Cell lines"], "article_id"=>1240410, "categories"=>["Biological Sciences"], "users"=>["Anders Ståhlberg", "Christina Kåbjörn Gustafsson", "Katarina Engtröm", "Christer Thomsen", "Soheila Dolatabadi", "Emma Jonasson", "Chieh-Yuan Li", "David Ruff", "Shiaw-Min Chen", "Pierre Åman"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0113110.s001", "https://dx.doi.org/10.1371/journal.pone.0113110.s002"], "stats"=>{"downloads"=>19, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Normal_and_Functional_TP53_in_Genetically_Stable_Myxoid_Round_Cell_Liposarcoma_/1240410", "title"=>"Normal and Functional TP53 in Genetically Stable Myxoid/Round Cell Liposarcoma", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2014-11-13 03:46:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/1793037"], "description"=>"<p>(A) Immunohistochemistry analysis of TP53 expression in a representative MLS/RCLS case. Inset shows TP53 mutated endometrial carcinoma as positive control. Brown precipitate indicates TP53 expression. Scale bar shows 100 µm. (B) Western blot analysis of TP53 in MLS and HT1080 cell lines. Three different antibodies directed against the core (central transcription factor part), N- and C-terminal parts were used. Two distinct bands (53 and 56 kD, respectively) were detected for the core part of TP53, while only the shorter 53 kD band was detected using antibodies against N- and C-terminal part of TP53. (C) Schematic map of eleven exons in <i>TP53</i>. The translated region is shown as dotted line, and only the translated part of exon eleven is shown. Transcripts detected by reverse transcription PCR and sequencing are shown as black lines. Protein fragment analyses by mass spectroscopy for MLS 402-91 are shown as grey lines. (D) Irradiation effect on TP53 and P21 (CDKN1A) expression in four MLS/RCLS cell lines, wild type HT1080 cells and HT1080 cells expressing FUS-DDIT3 (HT1080 FUS-DDIT3). Antibody against core TP53 part was used. The 68 KD band corresponds to post-translationally modified TP53. MLS 402-91 and 1765-92 carry simian virus 40 large T antigen, while MLS 2645-94 was established using the complete SV40 virus. GAPDH is used as loading control, +/− indicate irradiated and control cell samples, respectively. Positions and sizes of reference proteins are indicated.</p>", "links"=>[], "tags"=>["EWSR", "TP 53 proteins", "sv", "ion Torrent AmpliSeq screening", "TP 53 genes", "TP 53 mutations", "P 21 expression", "Functional TP 53", "mls", "TP 53 responses", "Cancer Hotspot panel", "TP 53", "Cell lines"], "article_id"=>1240403, "categories"=>["Biological Sciences"], "users"=>["Anders Ståhlberg", "Christina Kåbjörn Gustafsson", "Katarina Engtröm", "Christer Thomsen", "Soheila Dolatabadi", "Emma Jonasson", "Chieh-Yuan Li", "David Ruff", "Shiaw-Min Chen", "Pierre Åman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0113110.g001", "stats"=>{"downloads"=>1, "page_views"=>18, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_TP53_expression_in_MLS_RCLS_/1240403", "title"=>"TP53 expression in MLS/RCLS.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-11-13 03:46:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/1793039"], "description"=>"<p>Percentage of (A) TP53 and (B) P21 positive cells are shown. Mean ± SEM of three experiments are shown. * and ** indicate 95% and 99% significance using student's t-test. The number of strongly TP53 stained cells was assessed for one experiment, marked with dot (•) in respective bar. Representative immunofluorescence images for MLS 402-91 are shown. Scale bar shows 50 µm. (C) Western blot analysis of FUS-DDIT3 in MLS cell lines are shown. Different sizes correspond to Type I (MLS 402-91 and DL 221), II (MLS 2645-94) and VI (MLS 1765-92) fusion proteins. GAPDH is used as internal control between samples when calculating the relative FUS-DDIT3 expression level. The lowest FUS-DDIT3 expression value (DL 221) was arbitrarily set to a value of one.</p>", "links"=>[], "tags"=>["EWSR", "TP 53 proteins", "sv", "ion Torrent AmpliSeq screening", "TP 53 genes", "TP 53 mutations", "P 21 expression", "Functional TP 53", "mls", "TP 53 responses", "Cancer Hotspot panel", "TP 53", "Cell lines"], "article_id"=>1240405, "categories"=>["Biological Sciences"], "users"=>["Anders Ståhlberg", "Christina Kåbjörn Gustafsson", "Katarina Engtröm", "Christer Thomsen", "Soheila Dolatabadi", "Emma Jonasson", "Chieh-Yuan Li", "David Ruff", "Shiaw-Min Chen", "Pierre Åman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0113110.g002", "stats"=>{"downloads"=>1, "page_views"=>25, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Immunofluorescence_analysis_of_TP53_and_P21_in_irradiated_and_control_cultured_cells_/1240405", "title"=>"Immunofluorescence analysis of TP53 and P21 in irradiated and control cultured cells.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-11-13 03:46:50"}
  • {"files"=>["https://ndownloader.figshare.com/files/1793040"], "description"=>"<p>Cell line characteristics.</p>", "links"=>[], "tags"=>["EWSR", "TP 53 proteins", "sv", "ion Torrent AmpliSeq screening", "TP 53 genes", "TP 53 mutations", "P 21 expression", "Functional TP 53", "mls", "TP 53 responses", "Cancer Hotspot panel", "TP 53", "Cell lines"], "article_id"=>1240406, "categories"=>["Biological Sciences"], "users"=>["Anders Ståhlberg", "Christina Kåbjörn Gustafsson", "Katarina Engtröm", "Christer Thomsen", "Soheila Dolatabadi", "Emma Jonasson", "Chieh-Yuan Li", "David Ruff", "Shiaw-Min Chen", "Pierre Åman"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0113110.t001", "stats"=>{"downloads"=>0, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Cell_line_characteristics_/1240406", "title"=>"Cell line characteristics.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-11-13 03:46:50"}

PMC Usage Stats | Further Information

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Relative Metric

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