Genome-Wide Analysis of MicroRNAs and Their Target Genes Related to Leaf Senescence of Rice
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{"title"=>"Genome-wide analysis of MicroRNAs and their target genes related to leaf senescence of rice", "type"=>"journal", "authors"=>[{"first_name"=>"Xiangbin", "last_name"=>"Xu", "scopus_author_id"=>"55706268300"}, {"first_name"=>"Haiqi", "last_name"=>"Bai", "scopus_author_id"=>"56443351500"}, {"first_name"=>"Chaoping", "last_name"=>"Liu", "scopus_author_id"=>"56442866800"}, {"first_name"=>"Eryong", "last_name"=>"Chen", "scopus_author_id"=>"56443276600"}, {"first_name"=>"Qifeng", "last_name"=>"Chen", "scopus_author_id"=>"56442946400"}, {"first_name"=>"Jieyun", "last_name"=>"Zhuang", "scopus_author_id"=>"36862462500"}, {"first_name"=>"Bo", "last_name"=>"Shen", "scopus_author_id"=>"57198796304"}, {"first_name"=>"Keqiang", "last_name"=>"Wu", "scopus_author_id"=>"55481136300"}], "year"=>2014, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "scopus"=>"2-s2.0-84916876947", "pui"=>"600696796", "doi"=>"10.1371/journal.pone.0114313", "isbn"=>"1932-6203", "sgr"=>"84916876947", "pmid"=>"25479006"}, "id"=>"301d0764-884d-359d-a5d2-606308dbbeb5", "abstract"=>"Grain production of rice (Oryza sativa L.) is a top priority in ensuring food security for human beings. One of the approaches to increase yield is to delay leaf senescence and to extend the available time for photosynthesis. MicroRNAs (miRNAs) are key regulators of aging and cellular senescence in eukaryotes. Here, to help understand their biological role in rice leaf senescence, we report identification of miRNAs and their putative target genes by deep sequencing of six small RNA libraries, six RNA-seq libraries and two degradome libraries from the leaves of two super hybrid rice, Nei-2-You 6 (N2Y6, age-resistant rice) and Liang-You-Pei 9 (LYP9, age-sensitive rice). In total 372 known miRNAs, 162 miRNA candidates and 1145 targets were identified. Compared with the expression of miRNAs in the leaves of LYP9, the numbers of miRNAs up-regulated and down-regulated in the leaves of N2Y6 were 47 and 30 at early stage of grain-filling, 21 and 17 at the middle stage, and 11 and 37 at the late stage, respectively. Six miRNA families, osa-miR159, osa-miR160 osa-miR164, osa-miR167, osa-miR172 and osa-miR1848, targeting the genes encoding APETALA2 (AP2), zinc finger proteins, salicylic acid-induced protein 19 (SIP19), auxin response factors (ARF) and NAC transcription factors, respectively, were found to be involved in leaf senescence through phytohormone signaling pathways. These results provided valuable information for understanding the miRNA-mediated leaf senescence of rice, and offered an important foundation for rice breeding.", "link"=>"http://www.mendeley.com/research/genomewide-analysis-micrornas-target-genes-related-leaf-senescence-rice", "reader_count"=>39, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>5, "Librarian"=>1, "Researcher"=>9, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>7, "Student > Postgraduate"=>6, "Student > Master"=>3, "Other"=>1, "Student > Bachelor"=>2, "Lecturer > Senior Lecturer"=>1}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>5, "Librarian"=>1, "Researcher"=>9, "Student > Doctoral Student"=>4, "Student > Ph. D. Student"=>7, "Student > Postgraduate"=>6, "Student > Master"=>3, "Other"=>1, "Student > Bachelor"=>2, "Lecturer > Senior Lecturer"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Nursing and Health Professions"=>1, "Biochemistry, Genetics and Molecular Biology"=>2, "Agricultural and Biological Sciences"=>31, "Arts and Humanities"=>1, "Business, Management and Accounting"=>2, "Economics, Econometrics and Finance"=>1}, "reader_count_by_subdiscipline"=>{"Economics, Econometrics and Finance"=>{"Economics, Econometrics and Finance"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>31}, "Nursing and Health Professions"=>{"Nursing and Health Professions"=>1}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>2}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>2}, "Unspecified"=>{"Unspecified"=>1}, "Arts and Humanities"=>{"Arts and Humanities"=>1}}, "group_count"=>1}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/1826270"], "description"=>"<p>(A) Senescence phenotype of the leaves; (B) The content of chlorophyll a and chlorophyll b in leaves.</p>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262764, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0114313.g001", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Senescence_characterization_of_the_leaves_at_the_early_middle_and_late_stages_of_grain_filling_in_LYP9_and_N2Y6_/1262764", "title"=>"Senescence characterization of the leaves at the early, middle and late stages of grain-filling in LYP9 and N2Y6.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-12-05 03:17:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/1826377", "https://ndownloader.figshare.com/files/1826378", "https://ndownloader.figshare.com/files/1826379", "https://ndownloader.figshare.com/files/1826380", "https://ndownloader.figshare.com/files/1826381", "https://ndownloader.figshare.com/files/1826383", "https://ndownloader.figshare.com/files/1826384", "https://ndownloader.figshare.com/files/1826385"], "description"=>"<div><p>Grain production of rice (<i>Oryza sativa</i> L.) is a top priority in ensuring food security for human beings. One of the approaches to increase yield is to delay leaf senescence and to extend the available time for photosynthesis. MicroRNAs (miRNAs) are key regulators of aging and cellular senescence in eukaryotes. Here, to help understand their biological role in rice leaf senescence, we report identification of miRNAs and their putative target genes by deep sequencing of six small RNA libraries, six RNA-seq libraries and two degradome libraries from the leaves of two super hybrid rice, Nei-2-You 6 (N2Y6, age-resistant rice) and Liang-You-Pei 9 (LYP9, age-sensitive rice). In total 372 known miRNAs, 162 miRNA candidates and 1145 targets were identified. Compared with the expression of miRNAs in the leaves of LYP9, the numbers of miRNAs up-regulated and down-regulated in the leaves of N2Y6 were 47 and 30 at early stage of grain-filling, 21 and 17 at the middle stage, and 11 and 37 at the late stage, respectively. Six miRNA families, osa-miR159, osa-miR160 osa-miR164, osa-miR167, osa-miR172 and osa-miR1848, targeting the genes encoding APETALA2 (AP2), zinc finger proteins, salicylic acid-induced protein 19 (SIP19), auxin response factors (ARF) and NAC transcription factors, respectively, were found to be involved in leaf senescence through phytohormone signaling pathways. These results provided valuable information for understanding the miRNA-mediated leaf senescence of rice, and offered an important foundation for rice breeding.</p></div>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262857, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0114313.s001", "https://dx.doi.org/10.1371/journal.pone.0114313.s002", "https://dx.doi.org/10.1371/journal.pone.0114313.s003", "https://dx.doi.org/10.1371/journal.pone.0114313.s004", "https://dx.doi.org/10.1371/journal.pone.0114313.s005", "https://dx.doi.org/10.1371/journal.pone.0114313.s006", "https://dx.doi.org/10.1371/journal.pone.0114313.s007", "https://dx.doi.org/10.1371/journal.pone.0114313.s008"], "stats"=>{"downloads"=>15, "page_views"=>45, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Genome_Wide_Analysis_of_MicroRNAs_and_Their_Target_Genes_Related_to_Leaf_Senescence_of_Rice_/1262857", "title"=>"Genome-Wide Analysis of MicroRNAs and Their Target Genes Related to Leaf Senescence of Rice", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2014-12-05 03:17:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/1826281"], "description"=>"<p>(A) MiRNA candidates with the expression level of log<sub>2</sub>>1.5 and log<sub>2</sub><0.5 in the leaves of N2Y6 at the early stage of grain-filling as compared with that in LYP9. (B) MiRNA candidates with the expression level of log<sub>2</sub>>1.5 and log<sub>2</sub><0.5 in the leaves of N2Y6 at the middle stage of grain-filling as compared with that in LYP9. (C) MiRNA candidates with the expression level of log<sub>2</sub>>1.5 and log<sub>2</sub><0.5 in the leaves of N2Y6 at the late stage of grain-filling as compared with that in LYP9.</p>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262773, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0114313.g004", "stats"=>{"downloads"=>1, "page_views"=>22, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Differential_expression_levels_of_miRNA_candidates_in_the_leaves_of_N2Y6_and_LYP9_/1262773", "title"=>"Differential expression levels of miRNA candidates in the leaves of N2Y6 and LYP9.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-12-05 03:17:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/1826300"], "description"=>"<p>(More targets were shown in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0114313#pone.0114313.s006\" target=\"_blank\">Table S6</a>).</p><p>Parts of the identified targets involved in leaf senescence by degradome sequencing.</p>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262790, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0114313.t003", "stats"=>{"downloads"=>3, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Parts_of_the_identified_targets_involved_in_leaf_senescence_by_degradome_sequencing_/1262790", "title"=>"Parts of the identified targets involved in leaf senescence by degradome sequencing.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-12-05 03:17:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/1826297"], "description"=>"<p>(A) Targets in the leaves at the early stage of grain-filling; (B) Targets in the leaves at the middle stage of grain-filling; (C) Targets in the leaves at the late stage of grain-filling.</p>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262787, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0114313.g009", "stats"=>{"downloads"=>1, "page_views"=>17, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Targets_of_miRNAs_showing_significant_expression_changes_in_the_leaves_of_N2Y6_and_LYP9_/1262787", "title"=>"Targets of miRNAs showing significant expression changes in the leaves of N2Y6 and LYP9.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-12-05 03:17:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/1826275"], "description"=>"<p>(A) miRNAs with the expression level of log<sub>2</sub>>1.5 and log<sub>2</sub><0.5 in the leaves of N2Y6 at the early stage of grain-filling as compared with that in LYP9. (B) miRNAs with the expression level of log<sub>2</sub>>1.5 and log<sub>2</sub><0.5 in the leaves of N2Y6 at the middle stage of grain-filling as compared with that in LYP9. (C) miRNAs with the expression level of log<sub>2</sub>>1.5 and log<sub>2</sub><0.5 in the leaves of N2Y6 at the late stage of grain-filling as compared with that in LYP9.</p>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262767, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0114313.g003", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Differential_expression_levels_of_known_miRNAs_in_the_leaves_of_N2Y6_and_LYP9_/1262767", "title"=>"Differential expression levels of known miRNAs in the leaves of N2Y6 and LYP9.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-12-05 03:17:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/1826290"], "description"=>"<p>The GO analysis was carried out according to <i>Arabidopsis thaliana</i> and <i>Oryza sativa</i> databases.</p>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262781, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0114313.g007", "stats"=>{"downloads"=>0, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distribution_of_the_identified_targets_classified_based_on_putative_biological_processes_A_cellular_component_B_and_molecular_functions_C_/1262781", "title"=>"Distribution of the identified targets classified based on putative biological processes (A) cellular component (B), and molecular functions (C).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-12-05 03:17:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/1826273"], "description"=>"<p>Length distribution of mappable counts of sequ-seqs type in six libraries of leaf.</p>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262766, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0114313.g002", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Length_distribution_of_mappable_counts_of_sequ_seqs_type_in_six_libraries_of_leaf_/1262766", "title"=>"Length distribution of mappable counts of sequ-seqs type in six libraries of leaf.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-12-05 03:17:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/1826284"], "description"=>"<p>T-plots show the distribution of the degradome tags along the full-length of the target mRNA sequence. The red line represents the sliced target transcripts.</p>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262776, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0114313.g006", "stats"=>{"downloads"=>2, "page_views"=>25, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Five_different_categories_of_T_plot_of_miRNA_targets_/1262776", "title"=>"Five different categories of T-plot of miRNA targets.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-12-05 03:17:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/1826299"], "description"=>"<p>−: no significant changes.</p><p>+: log<sub>2</sub><0.5.</p><p>+ +: log<sub>2</sub>>1.5.</p><p>The known and miRNA candidates which showed significant changes in leaves at least in two stages of grain-filling in the two hybrid rice.</p>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262789, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0114313.t002", "stats"=>{"downloads"=>0, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_known_and_miRNA_candidates_which_showed_significant_changes_in_leaves_at_least_in_two_stages_of_grain_filling_in_the_two_hybrid_rice_/1262789", "title"=>"The known and miRNA candidates which showed significant changes in leaves at least in two stages of grain-filling in the two hybrid rice.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-12-05 03:17:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/1826282"], "description"=>"<p>The amount of expression was normalized by the level of OsU6_snRNA in qRT-PCR. All reactions of qRT-PCR were repeated three times for each sample. The left indicates the miRNA relative expression tested by qRT-PCR, and the right indicates the miRNA relative expression generated from the high-throughput sequencing.</p>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262774, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0114313.g005", "stats"=>{"downloads"=>0, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Expression_validation_of_miRNAs_in_the_leaves_of_N2Y6_and_LYP9_by_qRT_PCR_/1262774", "title"=>"Expression validation of miRNAs in the leaves of N2Y6 and LYP9 by qRT-PCR.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-12-05 03:17:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/1826298"], "description"=>"<p>3ADT&length filter: reads removed due to 3ADT not found and length with <17 nt and>25 nt were removed.</p><p>Junk reads: Junk:> = 2N,> = 7A,> = 8C,> = 6G,> = 7T,> = 10Dimer,> = 6Trimer, or> = 5Tetramer.</p><p>Rfam: collection of many common non-coding RNA families except micro RNA; <a href=\"http://rfam.janelia.org\" target=\"_blank\">http://rfam.janelia.org</a>.</p><p>Repeats: prototypic sequences representing repetitive DNA from different eukaryotic species; <a href=\"http://www.girinst.org/repbase\" target=\"_blank\">http://www.girinst.org/repbase</a>.</p><p>Notes: there is overlap in mapping of reads with mRNA, rRNA, tRNA, snRNA, snoRNA and repeats.</p><p>Overview of reads from raw data to cleaned sequences.</p>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262788, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0114313.t001", "stats"=>{"downloads"=>3, "page_views"=>22, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Overview_of_reads_from_raw_data_to_cleaned_sequences_/1262788", "title"=>"Overview of reads from raw data to cleaned sequences.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-12-05 03:17:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/1826292"], "description"=>"<p>(A) mRNAs expression level in the leaves of N2Y6 at the early, middle and late stages of grain-filling as compared with that in LYP9. (B) mRNA expression pattern in the leaves of N2Y6 and LYP9 at the early, middle and late stages of grain-filling.</p>", "links"=>[], "tags"=>["sip", "Rice Grain production", "delay leaf senescence", "NAC transcription factors", "Target Genes Related", "report identification", "N 2Y", "target genes", "1145 targets", "Leaf Senescence", "degradome libraries", "food security", "miRNA families", "RNA libraries", "rice leaf senescence", "genes encoding APETALA 2", "middle stage", "lyp", "arf", "162 miRNA candidates"], "article_id"=>1262783, "categories"=>["Biological Sciences"], "users"=>["Xiangbin Xu", "Haiqi Bai", "Chaoping Liu", "Eryong Chen", "Qifeng Chen", "Jieyun Zhuang", "Bo Shen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0114313.g008", "stats"=>{"downloads"=>1, "page_views"=>18, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_mRNAs_expression_in_the_leaves_of_N2Y6_and_LYP9_/1262783", "title"=>"mRNAs expression in the leaves of N2Y6 and LYP9.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-12-05 03:17:37"}

PMC Usage Stats | Further Information

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Relative Metric

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