Vitamin D Receptor Cdx-2 Polymorphism and Premenopausal Breast Cancer Risk in Southern Pakistani Patients
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{"title"=>"Vitamin D receptor Cdx-2 polymorphism and premenopausal breast cancer risk in Southern Pakistani patients", "type"=>"journal", "authors"=>[{"first_name"=>"Mehr Un Nisa", "last_name"=>"Iqbal", "scopus_author_id"=>"56573336100"}, {"first_name"=>"Taseer Ahmed", "last_name"=>"Khan", "scopus_author_id"=>"56385041500"}, {"first_name"=>"Syed Amir", "last_name"=>"Maqbool", "scopus_author_id"=>"56573845900"}], "year"=>2015, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"603282059", "scopus"=>"2-s2.0-84925815443", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pmid"=>"25799416", "sgr"=>"84925815443", "issn"=>"19326203", "doi"=>"10.1371/journal.pone.0122657"}, "id"=>"a953526c-9865-3548-b2b5-504c122e9788", "abstract"=>"BACKGROUND: Vitamin D3 is a secoster oid that exerts its effect by binding to its nuclear receptor called vitamin D receptor (VDR), inducing apoptosis and thereby inhibiting cell proliferation in cancer cells. The VDR receptor, located in the nucleus, is known to regulate the functions of over 200 genes. Various allelic forms of hVDR have been discovered that increase susceptibility to various cancers. The VDR-Cdx2 polymorphism, located in the promoter region of exon 1e in the VDR gene, influences the functional activity of the receptor, since the hVDR lacks consensus TATA and CAAT boxes. The current investigation examines the association between VDR-Cdx2 polymorphism and breast cancer in premenopausal females from Southern Pakistan.\\n\\nMETHODS: We conducted a case control study on 264 subjects (103 cases and 161 controls) who were recruited from a tertiary hospital located in Karachi, Pakistan. Genomic DNA was extracted from peripheral blood using a commercial kit method, and the VDR-Cdx2 polymorphism was genotyped using tetraprimer amplification refractory mutation system polymerase chain reaction (T-ARMS-PCR) method. Pearson chi square test was used to assess the association between VDR-Cdx2 genotype and breast cancer while genotype distribution in controls was evaluated by Hardy-Weinberg equilibrium (HWE). Breast cancer risk was calculated using odds ratios and 95% confidence intervals.\\n\\nRESULTS: The genotype distribution in the control group was in HWE (p > 0.05) for the VDR-Cdx2 polymorphism. A non-significant association was observed between VDR cdx2 polymorphism and breast cancer, however the GG genotype was at risk (OR = 1.832, 95% CI = 0.695-4.828) of developing breast cancer.\\n\\nCONCLUSION: The GG genotype of Cdx2-VDR gene polymorphism may increase the risk of developing breast cancer in young female patients in South Pakistan. Further investigations examining additional single nucleotide polymorphisms (SNPs) in VDR are required to assess their relationships with breast cancer.", "link"=>"http://www.mendeley.com/research/vitamin-d-receptor-cdx2-polymorphism-premenopausal-breast-cancer-risk-southern-pakistani-patients", "reader_count"=>10, "reader_count_by_academic_status"=>{"Researcher"=>1, "Student > Ph. D. Student"=>1, "Student > Postgraduate"=>3, "Student > Bachelor"=>4, "Lecturer"=>1}, "reader_count_by_user_role"=>{"Researcher"=>1, "Student > Ph. D. Student"=>1, "Student > Postgraduate"=>3, "Student > Bachelor"=>4, "Lecturer"=>1}, "reader_count_by_subject_area"=>{"Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>4, "Medicine and Dentistry"=>4, "Social Sciences"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>4}, "Social Sciences"=>{"Social Sciences"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>4}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}}, "reader_count_by_country"=>{"Netherlands"=>1}, "group_count"=>0}

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Figshare

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  • {"files"=>["https://ndownloader.figshare.com/files/1981285"], "description"=>"<p>Breast cancer clinical characteristics.</p>", "links"=>[], "tags"=>["exon 1 e", "association", "Pearson chi square test", "Premenopausal Breast Cancer Risk", "snp", "vitamin D receptor", "Patients BackgroundVitamin D 3", "gene", "case control study", "hwe", "breast cancer risk", "breast cancer", "ci", "dna", "caat", "tata", "breast cancer.ConclusionThe GG genotype", "VDR cdx 2 polymorphism", "Various allelic forms", "mutation system polymerase chain reaction"], "article_id"=>1350057, "categories"=>["Biological Sciences"], "users"=>["Mehr un Nisa Iqbal", "Taseer Ahmed Khan", "Syed Amir Maqbool"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0122657.t001", "stats"=>{"downloads"=>0, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Breast_cancer_clinical_characteristics_/1350057", "title"=>"Breast cancer clinical characteristics.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-03-23 03:50:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/1981286"], "description"=>"<p>*Unconditional logistic regression analysis</p><p>**Not calculated</p><p>Association of AA and GG genotype in relation to its covariates.</p>", "links"=>[], "tags"=>["exon 1 e", "association", "Pearson chi square test", "Premenopausal Breast Cancer Risk", "snp", "vitamin D receptor", "Patients BackgroundVitamin D 3", "gene", "case control study", "hwe", "breast cancer risk", "breast cancer", "ci", "dna", "caat", "tata", "breast cancer.ConclusionThe GG genotype", "VDR cdx 2 polymorphism", "Various allelic forms", "mutation system polymerase chain reaction"], "article_id"=>1350058, "categories"=>["Biological Sciences"], "users"=>["Mehr un Nisa Iqbal", "Taseer Ahmed Khan", "Syed Amir Maqbool"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0122657.t003", "stats"=>{"downloads"=>4, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Association_of_AA_and_GG_genotype_in_relation_to_its_covariates_/1350058", "title"=>"Association of AA and GG genotype in relation to its covariates.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-03-23 03:50:07"}

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Relative Metric

{"start_date"=>"2015-01-01T00:00:00Z", "end_date"=>"2015-12-31T00:00:00Z", "subject_areas"=>[]}
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