Modeling Occupancy of Hosts by Mistletoe Seeds after Accounting for Imperfect Detectability
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{"title"=>"Modeling occupancy of hosts by mistletoe seeds after accounting for imperfect detectability", "type"=>"journal", "authors"=>[{"first_name"=>"Rodrigo F.", "last_name"=>"Fadini", "scopus_author_id"=>"24491774900"}, {"first_name"=>"Renato", "last_name"=>"Cintra", "scopus_author_id"=>"6602258989"}], "year"=>2015, "source"=>"PLoS ONE", "identifiers"=>{"scopus"=>"2-s2.0-84929377760", "doi"=>"10.1371/journal.pone.0127004", "pui"=>"604377915", "issn"=>"19326203", "pmid"=>"25973754", "isbn"=>"1932-6203", "sgr"=>"84929377760"}, "id"=>"73fe503e-339c-3055-829b-88a1ddc341a8", "abstract"=>"The detection of an organism in a given site is widely used as a state variable in many meta-population and epidemiological studies. However, failure to detect the species does not nec-essarily mean that it is absent. Assessing detectability is important for occupancy (presence —absence) surveys; and identifying the factors reducing detectability may help improve sur-vey precision and efficiency. A method was used to estimate the occupancy status of host trees colonized by mistletoe seeds of Psittacanthus plagiophyllus as a function of host co-variates: host size and presence of mistletoe infections on the same or on the nearest neigh-boring host (the cashew tree Anacardium occidentale). The technique also evaluated the effect of taking detectability into account for estimating host occupancy by mistletoe seeds. Individual host trees were surveyed for presence of mistletoe seeds with the aid of two or three observers to estimate detectability and occupancy. Detectability was, on average, 17% higher in focal-host trees with infected neighbors, while decreased about 23 to 50% from smallest to largest hosts. The presence of mistletoe plants in the sample tree had negli-gible effect on detectability. Failure to detect hosts as occupied decreased occupancy by 2.5% on average, with maximum of 10% for large and isolated hosts. The method presented in this study has potential for use with metapopulation studies of mistletoes, especially those focusing on the seed stage, but also as improvement of accuracy in occupancy models esti-mates often used for metapopulation dynamics of tree-dwelling plants in general.", "link"=>"http://www.mendeley.com/research/modeling-occupancy-hosts-mistletoe-seeds-after-accounting-imperfect-detectability", "reader_count"=>18, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>2, "Student > Doctoral Student"=>2, "Researcher"=>1, "Student > Ph. D. Student"=>5, "Student > Master"=>3, "Student > Bachelor"=>1, "Professor"=>3}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>2, "Student > Doctoral Student"=>2, "Researcher"=>1, "Student > Ph. D. Student"=>5, "Student > Master"=>3, "Student > Bachelor"=>1, "Professor"=>3}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Environmental Science"=>3, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>12, "Medicine and Dentistry"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>12}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>3}}, "reader_count_by_country"=>{"Brazil"=>3, "Mexico"=>1}, "group_count"=>0}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/2067612"], "description"=>"<p>Central markers represent means, and lines represent 95% confidence intervals. Both graphs were traced with estimates from the model Ψ (size+neighborhood), p (size+neighborhood).</p>", "links"=>[], "tags"=>["Individual host trees", "cashew tree Anacardium occidentale", "occupancy models estimates", "detectability", "presence", "mistletoe seeds"], "article_id"=>1414688, "categories"=>["Uncategorised"], "users"=>["Rodrigo F. Fadini", "Renato Cintra"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0127004.g002", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Occupancy_A_and_detection_probability_B_of_mistletoe_seeds_of_Psittacanthus_plagiophyllus_deposited_on_the_host_Anacardium_occidentale_according_to_proximity_to_infected_hosts_host_size_host_crown_diameter_/1414688", "title"=>"Occupancy (A) and detection probability (B) of mistletoe seeds of <i>Psittacanthus plagiophyllus</i> deposited on the host <i>Anacardium occidentale</i> according to proximity to infected hosts host size (host crown diameter).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-05-14 02:43:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/2067616"], "description"=>"<div><p>The detection of an organism in a given site is widely used as a state variable in many metapopulation and epidemiological studies. However, failure to detect the species does not necessarily mean that it is absent. Assessing detectability is important for occupancy (presence—absence) surveys; and identifying the factors reducing detectability may help improve survey precision and efficiency. A method was used to estimate the occupancy status of host trees colonized by mistletoe seeds of <i>Psittacanthus plagiophyllus</i> as a function of host covariates: host size and presence of mistletoe infections on the same or on the nearest neighboring host (the cashew tree <i>Anacardium occidentale</i>). The technique also evaluated the effect of taking detectability into account for estimating host occupancy by mistletoe seeds. Individual host trees were surveyed for presence of mistletoe seeds with the aid of two or three observers to estimate detectability and occupancy. Detectability was, on average, 17% higher in focal-host trees with infected neighbors, while decreased about 23 to 50% from smallest to largest hosts. The presence of mistletoe plants in the sample tree had negligible effect on detectability. Failure to detect hosts as occupied decreased occupancy by 2.5% on average, with maximum of 10% for large and isolated hosts. The method presented in this study has potential for use with metapopulation studies of mistletoes, especially those focusing on the seed stage, but also as improvement of accuracy in occupancy models estimates often used for metapopulation dynamics of tree-dwelling plants in general.</p></div>", "links"=>[], "tags"=>["Individual host trees", "cashew tree Anacardium occidentale", "occupancy models estimates", "detectability", "presence", "mistletoe seeds"], "article_id"=>1414692, "categories"=>["Uncategorised"], "users"=>["Rodrigo F. Fadini", "Renato Cintra"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0127004", "stats"=>{"downloads"=>3, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Modeling_Occupancy_of_Hosts_by_Mistletoe_Seeds_after_Accounting_for_Imperfect_Detectability_/1414692", "title"=>"Modeling Occupancy of Hosts by Mistletoe Seeds after Accounting for Imperfect Detectability", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-05-14 02:43:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/2067613"], "description"=>"<p>Comparison of occupancy estimates of seeds of <i>Psittacanthus plagiophyllus</i> between two models: one using naïve estimates fitted with a logistic regression (logit (p) = 0.251 + 0.18 (host crown) - 1.64(neighbor)), and other using occupancy estimates accounted for detectability (first model of <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0127004#pone.0127004.t001\" target=\"_blank\">Table 1</a>).</p>", "links"=>[], "tags"=>["Individual host trees", "cashew tree Anacardium occidentale", "occupancy models estimates", "detectability", "presence", "mistletoe seeds"], "article_id"=>1414689, "categories"=>["Uncategorised"], "users"=>["Rodrigo F. Fadini", "Renato Cintra"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0127004.g003", "stats"=>{"downloads"=>2, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Comparison_of_occupancy_estimates_of_seeds_of_Psittacanthus_plagiophyllus_between_two_models_one_using_na_ve_estimates_fitted_with_a_logistic_regression_logit_p_0_251_0_18_host_crown_1_64_neighbor_and_other_using_occupancy_estimates_accounted_for_detecta/1414689", "title"=>"Comparison of occupancy estimates of seeds of <i>Psittacanthus plagiophyllus</i> between two models: one using naïve estimates fitted with a logistic regression (logit (p) = 0.251 + 0.18 (host crown) - 1.64(neighbor)), and other using occupancy estimates accounted for detectability (first model of Table 1).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-05-14 02:43:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/2067614"], "description"=>"<p>Models were organized in decreasing order of importance. Only five of the 36 models and their respective resulting values are presented.</p><p>Summary of model selection for predicting both the occupancy and detectability of hosts (<i>Anacardium occidentale</i>) by seeds of the mistletoe <i>Psittacanthus plagiophyllus</i>.</p>", "links"=>[], "tags"=>["Individual host trees", "cashew tree Anacardium occidentale", "occupancy models estimates", "detectability", "presence", "mistletoe seeds"], "article_id"=>1414690, "categories"=>["Uncategorised"], "users"=>["Rodrigo F. Fadini", "Renato Cintra"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0127004.t001", "stats"=>{"downloads"=>3, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Summary_of_model_selection_for_predicting_both_the_occupancy_and_detectability_of_hosts_Anacardium_occidentale_by_seeds_of_the_mistletoe_Psittacanthus_plagiophyllus_/1414690", "title"=>"Summary of model selection for predicting both the occupancy and detectability of hosts (<i>Anacardium occidentale</i>) by seeds of the mistletoe <i>Psittacanthus plagiophyllus</i>.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-05-14 02:43:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/2067610"], "description"=>"<p>Seeds of <i>P</i>. <i>plagiophyllus</i> attached to a branch of <i>A</i>. <i>occidentale</i> (Photo: Leidielly Ghizoni).</p>", "links"=>[], "tags"=>["Individual host trees", "cashew tree Anacardium occidentale", "occupancy models estimates", "detectability", "presence", "mistletoe seeds"], "article_id"=>1414687, "categories"=>["Uncategorised"], "users"=>["Rodrigo F. Fadini", "Renato Cintra"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0127004.g001", "stats"=>{"downloads"=>2, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Seeds_of_P_plagiophyllus_attached_to_a_branch_of_A_occidentale_Photo_Leidielly_Ghizoni_/1414687", "title"=>"Seeds of <i>P</i>. <i>plagiophyllus</i> attached to a branch of <i>A</i>. <i>occidentale</i> (Photo: Leidielly Ghizoni).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-05-14 02:43:18"}

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Relative Metric

{"start_date"=>"2015-01-01T00:00:00Z", "end_date"=>"2015-12-31T00:00:00Z", "subject_areas"=>[]}
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