Didymosphenia geminata in the Upper Esopus Creek: Current Status, Variability, and Controlling Factors
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{"title"=>"Didymosphenia geminata in the Upper Esopus Creek: Current status, variability, and controlling factors", "type"=>"journal", "authors"=>[{"first_name"=>"Scott Daniel", "last_name"=>"George", "scopus_author_id"=>"56591342800"}, {"first_name"=>"Barry Paul", "last_name"=>"Baldigo", "scopus_author_id"=>"6602670998"}], "year"=>2015, "source"=>"PLoS ONE", "identifiers"=>{"sgr"=>"84940055462", "pmid"=>"26148184", "pui"=>"605749834", "scopus"=>"2-s2.0-84940055462", "doi"=>"10.1371/journal.pone.0130558", "issn"=>"19326203"}, "id"=>"79fa9ecd-22a3-3e4d-b483-b6807ef1a8bf", "abstract"=>"In May of 2009, the bloom-forming diatom Didymosphenia geminata was first identified in the Upper Esopus Creek, a key tributary to the New York City water-supply and a popular recreational stream. The Upper Esopus receives supplemental flows from the Shandaken Portal, an underground aqueduct delivering waters from a nearby basin. The presence of D. geminata is a concern for the local economy, water supply, and aquatic ecosystem because nuisance blooms have been linked to degraded stream condition in other regions. Here we ascertain the extent and severity of the D. geminata invasion, determine the impact of supplemental flows from the Portal on D. geminata, and identify potential factors that may limit D. geminata in the watershed. Stream temperature, discharge, and water quality were characterized at select sites and periphyton samples were collected five times at 6 to 20 study sites between 2009 and 2010 to assess standing crop, diatom community structure, and density of D. geminata and all diatoms. Density of D. geminata ranged from 0-12 cells cm-2 at tributary sites, 0-781 cells cm-2 at sites upstream of the Portal, and 0-2,574 cells cm-2 at sites downstream of the Portal. Survey period and Portal (upstream or downstream) each significantly affected D. geminata cell density. In general, D. geminata was most abundant during the November 2009 and June 2010 surveys and at sites immediately downstream of the Portal. We found that D. geminata did not reach nuisance levels or strongly affect the periphyton community. Similarly, companion studies showed that local macroinvertebrate and fish communities were generally unaffected. A number of abiotic factors including variable flows and moderate levels of phosphorous and suspended sediment may limit blooms of D. geminata in this watershed.", "link"=>"http://www.mendeley.com/research/didymosphenia-geminata-upper-esopus-creek-current-status-variability-controlling-factors", "reader_count"=>12, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>1, "Student > Doctoral Student"=>1, "Researcher"=>2, "Student > Ph. D. Student"=>1, "Other"=>1, "Student > Master"=>1, "Student > Bachelor"=>4, "Professor"=>1}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>1, "Student > Doctoral Student"=>1, "Researcher"=>2, "Student > Ph. D. Student"=>1, "Other"=>1, "Student > Master"=>1, "Student > Bachelor"=>4, "Professor"=>1}, "reader_count_by_subject_area"=>{"Engineering"=>1, "Unspecified"=>1, "Environmental Science"=>2, "Materials Science"=>1, "Agricultural and Biological Sciences"=>5, "Chemistry"=>2}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Materials Science"=>{"Materials Science"=>1}, "Chemistry"=>{"Chemistry"=>2}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>5}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>2}}, "reader_count_by_country"=>{"United States"=>1, "Germany"=>1}, "group_count"=>0}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/2162960"], "description"=>"<p>Median value is indicated by the black center line, mean value is indicated by the black triangle, and the bottom and top of the box indicate the lower and upper quartiles, respectively. Whiskers represent the minimum and maximum values and hollow circles represent outliers.</p>", "links"=>[], "tags"=>["nuisance levels", "periphyton community", "water supply", "20 study sites", "June 2010 surveys", "nuisance blooms", "Shandaken Portal", "survey period", "November 2009", "geminata cell density", "abiotic factors", "periphyton samples", "Upper Esopus Creek", "Water quality", "tributary sites", "fish communities", "companion studies", "Didymosphenia geminata", "Controlling Factors", "Current Status", "stream temperature", "Upper Esopus", "geminata invasion", "diatom community structure", "stream condition"], "article_id"=>1474020, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Scott Daniel George", "Barry Paul Baldigo"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0130558.g003", "stats"=>{"downloads"=>0, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Box_and_whisker_plots_summarizing_temporal_trends_in_A_D_geminata_density_B_ash_free_dry_mass_AFDM_C_chlorophyll_a_chl_a_D_total_diatom_density_and_E_percent_D_geminata_for_all_surveys_conducted_at_seasonal_sites_2009_2010_/1474020", "title"=>"Box and whisker plots summarizing temporal trends in (A) <i>D</i>. <i>geminata</i> density, (B) ash-free dry mass (AFDM), (C) chlorophyll <i>a</i> (chl <i>a</i>), (D) total diatom density, and (E) percent <i>D</i>. <i>geminata</i> for all surveys conducted at seasonal sites, 2009–2010.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-06 03:03:59"}
  • {"files"=>["https://ndownloader.figshare.com/files/2162963"], "description"=>"<p>MDS ordination based on fourth-root transformed diatom abundance data for each of the five surveys as indicated by colored symbols.</p>", "links"=>[], "tags"=>["nuisance levels", "periphyton community", "water supply", "20 study sites", "June 2010 surveys", "nuisance blooms", "Shandaken Portal", "survey period", "November 2009", "geminata cell density", "abiotic factors", "periphyton samples", "Upper Esopus Creek", "Water quality", "tributary sites", "fish communities", "companion studies", "Didymosphenia geminata", "Controlling Factors", "Current Status", "stream temperature", "Upper Esopus", "geminata invasion", "diatom community structure", "stream condition"], "article_id"=>1474022, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Scott Daniel George", "Barry Paul Baldigo"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0130558.g004", "stats"=>{"downloads"=>4, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_MDS_ordination_based_on_fourth_root_transformed_diatom_abundance_data_for_each_of_the_five_surveys_as_indicated_by_colored_symbols_/1474022", "title"=>"MDS ordination based on fourth-root transformed diatom abundance data for each of the five surveys as indicated by colored symbols.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-06 03:03:59"}
  • {"files"=>["https://ndownloader.figshare.com/files/2162966"], "description"=>"<p>Black dots indicate cell density >0 and red “x”s indicate a non-detection.</p>", "links"=>[], "tags"=>["nuisance levels", "periphyton community", "water supply", "20 study sites", "June 2010 surveys", "nuisance blooms", "Shandaken Portal", "survey period", "November 2009", "geminata cell density", "abiotic factors", "periphyton samples", "Upper Esopus Creek", "Water quality", "tributary sites", "fish communities", "companion studies", "Didymosphenia geminata", "Controlling Factors", "Current Status", "stream temperature", "Upper Esopus", "geminata invasion", "diatom community structure", "stream condition"], "article_id"=>1474025, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Scott Daniel George", "Barry Paul Baldigo"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0130558.g005", "stats"=>{"downloads"=>1, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Cell_density_of_D_geminata_plotted_by_site_and_month_showing_a_possible_upstream_range_expansion_/1474025", "title"=>"Cell density of <i>D</i>. <i>geminata</i> plotted by site and month showing a possible upstream range expansion.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-06 03:03:59"}
  • {"files"=>["https://ndownloader.figshare.com/files/2162967"], "description"=>"<p>Continuous (15-minute) water temperature (A) and daily discharge (B) at USOP-03A (red), USOP-03B (green), and the Shandaken Portal (black) for the period 7/1/2009–9/1/2010.</p>", "links"=>[], "tags"=>["nuisance levels", "periphyton community", "water supply", "20 study sites", "June 2010 surveys", "nuisance blooms", "Shandaken Portal", "survey period", "November 2009", "geminata cell density", "abiotic factors", "periphyton samples", "Upper Esopus Creek", "Water quality", "tributary sites", "fish communities", "companion studies", "Didymosphenia geminata", "Controlling Factors", "Current Status", "stream temperature", "Upper Esopus", "geminata invasion", "diatom community structure", "stream condition"], "article_id"=>1474026, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Scott Daniel George", "Barry Paul Baldigo"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0130558.g006", "stats"=>{"downloads"=>3, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Continuous_15_minute_water_temperature_A_and_daily_discharge_B_at_USOP_03A_red_USOP_03B_green_and_the_Shandaken_Portal_black_for_the_period_7_1_2009_8211_9_1_2010_/1474026", "title"=>"Continuous (15-minute) water temperature (A) and daily discharge (B) at USOP-03A (red), USOP-03B (green), and the Shandaken Portal (black) for the period 7/1/2009–9/1/2010.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-06 03:03:59"}
  • {"files"=>["https://ndownloader.figshare.com/files/2162968"], "description"=>"<p>Asterisks denote seasonal sites that were sampled during all five surveys.</p>", "links"=>[], "tags"=>["nuisance levels", "periphyton community", "water supply", "20 study sites", "June 2010 surveys", "nuisance blooms", "Shandaken Portal", "survey period", "November 2009", "geminata cell density", "abiotic factors", "periphyton samples", "Upper Esopus Creek", "Water quality", "tributary sites", "fish communities", "companion studies", "Didymosphenia geminata", "Controlling Factors", "Current Status", "stream temperature", "Upper Esopus", "geminata invasion", "diatom community structure", "stream condition"], "article_id"=>1474027, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Scott Daniel George", "Barry Paul Baldigo"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0130558.t001", "stats"=>{"downloads"=>6, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Stream_name_site_code_coordinates_drainage_area_DA_and_elevation_for_periphyton_surveys_conducted_on_the_Upper_Esopus_Creek_and_tributaries_2009_8211_2010_/1474027", "title"=>"Stream name, site code, coordinates, drainage area (DA), and elevation for periphyton surveys conducted on the Upper Esopus Creek and tributaries, 2009–2010.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-07-06 03:03:59"}
  • {"files"=>["https://ndownloader.figshare.com/files/2162969"], "description"=>"<p><sup>1</sup> Discharge at USOP-02 and USOP-03 were modeled from USGS stream gage data at USOP-03A using a drainage area correction and therefore have the same coefficient of variation.</p><p>Mean temperature, mean daily discharge, and discharge coefficient of variation (CV) for the 30 days preceding each survey at seasonal sites.</p>", "links"=>[], "tags"=>["nuisance levels", "periphyton community", "water supply", "20 study sites", "June 2010 surveys", "nuisance blooms", "Shandaken Portal", "survey period", "November 2009", "geminata cell density", "abiotic factors", "periphyton samples", "Upper Esopus Creek", "Water quality", "tributary sites", "fish communities", "companion studies", "Didymosphenia geminata", "Controlling Factors", "Current Status", "stream temperature", "Upper Esopus", "geminata invasion", "diatom community structure", "stream condition"], "article_id"=>1474028, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Scott Daniel George", "Barry Paul Baldigo"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0130558.t002", "stats"=>{"downloads"=>9, "page_views"=>25, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Mean_temperature_mean_daily_discharge_and_discharge_coefficient_of_variation_CV_for_the_30_days_preceding_each_survey_at_seasonal_sites_/1474028", "title"=>"Mean temperature, mean daily discharge, and discharge coefficient of variation (CV) for the 30 days preceding each survey at seasonal sites.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-07-06 03:03:59"}
  • {"files"=>["https://ndownloader.figshare.com/files/2162971"], "description"=>"<p>Results of mixed model analysis of log(x+1)-transformed <i>D</i>. <i>geminata</i> cell density with Portal, period, and period*Portal as fixed factors and site (nested within Portal) as a random factor.</p>", "links"=>[], "tags"=>["nuisance levels", "periphyton community", "water supply", "20 study sites", "June 2010 surveys", "nuisance blooms", "Shandaken Portal", "survey period", "November 2009", "geminata cell density", "abiotic factors", "periphyton samples", "Upper Esopus Creek", "Water quality", "tributary sites", "fish communities", "companion studies", "Didymosphenia geminata", "Controlling Factors", "Current Status", "stream temperature", "Upper Esopus", "geminata invasion", "diatom community structure", "stream condition"], "article_id"=>1474030, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Scott Daniel George", "Barry Paul Baldigo"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0130558.t004", "stats"=>{"downloads"=>5, "page_views"=>22, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Results_of_mixed_model_analysis_of_log_x_1_transformed_D_geminata_cell_density_with_Portal_period_and_period_Portal_as_fixed_factors_and_site_nested_within_Portal_as_a_random_factor_/1474030", "title"=>"Results of mixed model analysis of log(x+1)-transformed <i>D</i>. <i>geminata</i> cell density with Portal, period, and period*Portal as fixed factors and site (nested within Portal) as a random factor.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-07-06 03:03:59"}
  • {"files"=>["https://ndownloader.figshare.com/files/2162951"], "description"=>"<p>Locations of periphyton sampling sites in the Upper Esopus Creek and tributaries, 2009–2010.</p>", "links"=>[], "tags"=>["nuisance levels", "periphyton community", "water supply", "20 study sites", "June 2010 surveys", "nuisance blooms", "Shandaken Portal", "survey period", "November 2009", "geminata cell density", "abiotic factors", "periphyton samples", "Upper Esopus Creek", "Water quality", "tributary sites", "fish communities", "companion studies", "Didymosphenia geminata", "Controlling Factors", "Current Status", "stream temperature", "Upper Esopus", "geminata invasion", "diatom community structure", "stream condition"], "article_id"=>1474010, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Scott Daniel George", "Barry Paul Baldigo"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0130558.g001", "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Locations_of_periphyton_sampling_sites_in_the_Upper_Esopus_Creek_and_tributaries_2009_8211_2010_/1474010", "title"=>"Locations of periphyton sampling sites in the Upper Esopus Creek and tributaries, 2009–2010.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-06 03:03:59"}
  • {"files"=>["https://ndownloader.figshare.com/files/2162952"], "description"=>"<p>Continuous (15-minute) discharge at USOP-06 and cell density of <i>D</i>. <i>geminata</i> from seasonal sites upstream of the Shandaken Portal (red triangles) and downstream of the Shandaken Portal (green circles) during the five surveys conducted between 8/1/2009 and 9/1/2010 [all zero values (no detection) were replaced with 0.1 to facilitate plotting in log space].</p>", "links"=>[], "tags"=>["nuisance levels", "periphyton community", "water supply", "20 study sites", "June 2010 surveys", "nuisance blooms", "Shandaken Portal", "survey period", "November 2009", "geminata cell density", "abiotic factors", "periphyton samples", "Upper Esopus Creek", "Water quality", "tributary sites", "fish communities", "companion studies", "Didymosphenia geminata", "Controlling Factors", "Current Status", "stream temperature", "Upper Esopus", "geminata invasion", "diatom community structure", "stream condition"], "article_id"=>1474012, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Scott Daniel George", "Barry Paul Baldigo"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0130558.g002", "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Continuous_15_minute_discharge_at_USOP_06_and_cell_density_of_D_geminata_from_seasonal_sites_upstream_of_the_Shandaken_Portal_red_triangles_and_downstream_of_the_Shandaken_Portal_green_circles_during_the_five_surveys_conducted_between_8_1_2009_and_9_1_20/1474012", "title"=>"Continuous (15-minute) discharge at USOP-06 and cell density of <i>D</i>. <i>geminata</i> from seasonal sites upstream of the Shandaken Portal (red triangles) and downstream of the Shandaken Portal (green circles) during the five surveys conducted between 8/1/2009 and 9/1/2010 [all zero values (no detection) were replaced with 0.1 to facilitate plotting in log space].", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-06 03:03:59"}

PMC Usage Stats | Further Information

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Relative Metric

{"start_date"=>"2015-01-01T00:00:00Z", "end_date"=>"2015-12-31T00:00:00Z", "subject_areas"=>[]}
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