Comparative Analysis of Stress Induced Gene Expression in Caenorhabditis elegans following Exposure to Environmental and Lab Reconstituted Complex Metal Mixture
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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/2174116"], "description"=>"<div><p>Metals are essential for many physiological processes and are ubiquitously present in the environment. However, high metal concentrations can be harmful to organisms and lead to physiological stress and diseases. The accumulation of transition metals in the environment due to either natural processes or anthropogenic activities such as mining results in the contamination of water and soil environments. The present study used <i>Caenorhabditis elegans</i> to evaluate gene expression as an indicator of physiological response, following exposure to water collected from three different locations downstream of a Swedish mining site and a lab reconstituted metal mixture. Our results indicated that the reconstituted metal mixture exerted a direct stress response in <i>C</i>. <i>elegans</i> whereas the environmental waters elicited either a diminished or abrogated response. This suggests that it is not sufficient to use the biological effects observed from laboratory mixtures to extrapolate the effects observed in complex aquatic environments and apply this to risk assessment and intervention.</p></div>", "links"=>[], "tags"=>["Lab Reconstituted Complex Metal Mixture Metals", "Stress Induced Gene Expression", "response", "Swedish mining site", "Caenorhabditis elegans", "lab reconstituted metal mixture", "stress", "reconstituted metal mixture"], "article_id"=>1481997, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Ranjeet Kumar", "Ajay Pradhan", "Faisal Ahmad Khan", "Pia Lindström", "Daniel Ragnvaldsson", "Per Ivarsson", "Per-Erik Olsson", "Jana Jass"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0132896", "stats"=>{"downloads"=>1, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Comparative_Analysis_of_Stress_Induced_Gene_Expression_in_Caenorhabditis_elegans_following_Exposure_to_Environmental_and_Lab_Reconstituted_Complex_Metal_Mixture/1481997", "title"=>"Comparative Analysis of Stress Induced Gene Expression in <i>Caenorhabditis elegans</i> following Exposure to Environmental and Lab Reconstituted Complex Metal Mixture", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-13 03:39:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/2174115"], "description"=>"<p><sup>a</sup>The following substances were below detection limits: aliphatics >C10-C12, >C12-C16, >C16-C35; chlorobenzine; total PCB; naphthalene; acenaphthylen; acenaphthene; fluorene; phenanthrene; anthracene; fluoranthene; pyrene; benzo(a)anthracene; chrysene; benzo(b)fluoranthene; benzo(k)fluoranthene; benzo(a)pyrene; benzo(ah)anthracene; benzo(ghi)perylene; indeno(123cd)pyrene; total PAH.</p><p>Chemical analysis of water samples from Lake Hornträsket and the Vormbäcken stream.</p>", "links"=>[], "tags"=>["Lab Reconstituted Complex Metal Mixture Metals", "Stress Induced Gene Expression", "response", "Swedish mining site", "Caenorhabditis elegans", "lab reconstituted metal mixture", "stress", "reconstituted metal mixture"], "article_id"=>1481996, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Ranjeet Kumar", "Ajay Pradhan", "Faisal Ahmad Khan", "Pia Lindström", "Daniel Ragnvaldsson", "Per Ivarsson", "Per-Erik Olsson", "Jana Jass"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0132896.t002", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Chemical_analysis_of_water_samples_from_Lake_Horntr_228_sket_and_the_Vormb_228_cken_stream_/1481996", "title"=>"Chemical analysis of water samples from Lake Hornträsket and the Vormbäcken stream.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-07-13 03:39:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/2174110"], "description"=>"<p><i>C</i>. <i>elegans</i> treated with the metal cocktail (MC) or waters from Lake Hornträsket (H) and Vombäcken stream at Björnås (B) and the exit to Vindelälven (V) were analyzed for the expression of genes associated with hormone receptors (<i>fshr-1</i>, <i>nhr-8</i> and <i>nhr-14)</i> and development (<i>vit-2</i>, <i>daf-12</i>, and <i>apl-1)</i> were tested using qRT-PCR. One way analysis of variance (ANOVA) followed by Tukey’s post-test was used for multiple group comparison where * refers to <i>p</i><0.01 as compared to control whereas # represents significant differences in between the sites H, B and V. The dotted line represents the expression level normalized to that of the control (K-medium prepared with Milli-Q water).</p>", "links"=>[], "tags"=>["Lab Reconstituted Complex Metal Mixture Metals", "Stress Induced Gene Expression", "response", "Swedish mining site", "Caenorhabditis elegans", "lab reconstituted metal mixture", "stress", "reconstituted metal mixture"], "article_id"=>1481991, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Ranjeet Kumar", "Ajay Pradhan", "Faisal Ahmad Khan", "Pia Lindström", "Daniel Ragnvaldsson", "Per Ivarsson", "Per-Erik Olsson", "Jana Jass"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0132896.g005", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Effect_of_metals_exposure_on_nuclear_hormone_receptors_and_developmental_genes_in_C_elegans_/1481991", "title"=>"Effect of metals exposure on nuclear hormone receptors and developmental genes in <i>C</i>. <i>elegans</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-13 03:39:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/2174111"], "description"=>"<p>Apoptosis marker genes <i>ape-1</i> and <i>hus-1</i> and innate immunity modulators <i>tir-1</i>, <i>clec-60</i>, and <i>bar-1</i> were analysed in <i>C</i>. <i>elegans</i> treated with the metal cocktail (MC) or waters from Lake Hornträsket (H) and Vombäcken stream at Björnås (B) and the exit to Vindelälven (V). One way analysis of variance (ANOVA) followed by Tukey’s post-test was used for multiple group comparison where * refers to <i>p</i><0.01 as compared to control and # represents significant differences in between the sites H, B and V. The dotted line represents the expression level normalized to that of the control (K-medium prepared with Milli-Q water).</p>", "links"=>[], "tags"=>["Lab Reconstituted Complex Metal Mixture Metals", "Stress Induced Gene Expression", "response", "Swedish mining site", "Caenorhabditis elegans", "lab reconstituted metal mixture", "stress", "reconstituted metal mixture"], "article_id"=>1481992, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Ranjeet Kumar", "Ajay Pradhan", "Faisal Ahmad Khan", "Pia Lindström", "Daniel Ragnvaldsson", "Per Ivarsson", "Per-Erik Olsson", "Jana Jass"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0132896.g006", "stats"=>{"downloads"=>0, "page_views"=>15, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Effect_of_metal_exposure_on_C_elegans_genes_involved_in_apoptosis_and_innate_immunity_/1481992", "title"=>"Effect of metal exposure on <i>C</i>. <i>elegans</i> genes involved in apoptosis and innate immunity.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-13 03:39:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/2174109"], "description"=>"<p>Adult <i>C</i>. <i>elegans</i> treated with the metal cocktail (MC) or waters from Lake Hornträsket (H) and Vombäcken stream at Björnås (B) and the exit to Vindelälven (V) were analyzed for the expression of ten metal response genes; <i>mtl-1</i>, <i>mtl-2</i>, <i>ftn-1</i>, <i>pgp-5</i>, <i>cdf-2</i>, <i>hif-1</i>, <i>numr-1</i>, <i>aip-1</i>, <i>cdr-1</i>, and <i>hmt-1</i>. One way analysis of variance (ANOVA) followed by Tukey’s post-test was used for multiple group comparison where * refers to <i>p</i>< 0.01 as compared to control and # represents significant differences in between the sites H, B and V. The dotted line represents the expression level normalized to that of the control (K-medium prepared with Milli-Q water).</p>", "links"=>[], "tags"=>["Lab Reconstituted Complex Metal Mixture Metals", "Stress Induced Gene Expression", "response", "Swedish mining site", "Caenorhabditis elegans", "lab reconstituted metal mixture", "stress", "reconstituted metal mixture"], "article_id"=>1481990, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Ranjeet Kumar", "Ajay Pradhan", "Faisal Ahmad Khan", "Pia Lindström", "Daniel Ragnvaldsson", "Per Ivarsson", "Per-Erik Olsson", "Jana Jass"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0132896.g004", "stats"=>{"downloads"=>5, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Effect_of_C_elegans_exposure_on_the_metal_response_genes_/1481990", "title"=>"Effect of <i>C</i>. <i>elegans</i> exposure on the metal response genes.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-13 03:39:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/2174106"], "description"=>"<p>Synchronized young adult <i>C</i>. <i>elegans</i> were exposed for six hours to the metal cocktail (MC) or waters from Lake Hornträsket (H) and Vormbäcken stream at Björkås (B) and the exit to Vindelälven (V). qRT-PCR was performed for genes <i>hsp-16</i>.<i>1</i>, <i>hsp-16</i>.<i>2</i>, <i>hsp-16</i>.<i>48</i> and <i>hsp-70</i>. One way analysis of variance (ANOVA) followed by Tukey’s post-test was used for multiple group comparison where * refers to <i>p</i><0.01 as compared to control, and # represents significant differences between the environmental sites H, B and V. The dotted line represents the expression level normalized to that of the control (K-medium prepared with Milli-Q water).</p>", "links"=>[], "tags"=>["Lab Reconstituted Complex Metal Mixture Metals", "Stress Induced Gene Expression", "response", "Swedish mining site", "Caenorhabditis elegans", "lab reconstituted metal mixture", "stress", "reconstituted metal mixture"], "article_id"=>1481987, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Ranjeet Kumar", "Ajay Pradhan", "Faisal Ahmad Khan", "Pia Lindström", "Daniel Ragnvaldsson", "Per Ivarsson", "Per-Erik Olsson", "Jana Jass"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0132896.g002", "stats"=>{"downloads"=>0, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Metal_exposure_alters_the_expression_of_heat_shock_response_genes_in_C_elegans_/1481987", "title"=>"Metal exposure alters the expression of heat shock response genes in <i>C</i>. <i>elegans</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-13 03:39:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/2174105"], "description"=>"<p>Water samples were collected from Lake Hornträsket (H) adjacent to Hornträsket mine (Mine) and downstream Vormbäcken stream at Björkås (B) and the exit to Vindelälven (V). The tailings dam is indicated by an arrow.</p>", "links"=>[], "tags"=>["Lab Reconstituted Complex Metal Mixture Metals", "Stress Induced Gene Expression", "response", "Swedish mining site", "Caenorhabditis elegans", "lab reconstituted metal mixture", "stress", "reconstituted metal mixture"], "article_id"=>1481986, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Ranjeet Kumar", "Ajay Pradhan", "Faisal Ahmad Khan", "Pia Lindström", "Daniel Ragnvaldsson", "Per Ivarsson", "Per-Erik Olsson", "Jana Jass"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0132896.g001", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Map_of_lake_Horntr_228_sket_and_downstream_Vormb_228_cken_stream_in_northern_Sweden_/1481986", "title"=>"Map of lake Hornträsket and downstream Vormbäcken stream in northern Sweden.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-13 03:39:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/2174114"], "description"=>"<p>Target genes used in the qPCR analysis.</p>", "links"=>[], "tags"=>["Lab Reconstituted Complex Metal Mixture Metals", "Stress Induced Gene Expression", "response", "Swedish mining site", "Caenorhabditis elegans", "lab reconstituted metal mixture", "stress", "reconstituted metal mixture"], "article_id"=>1481995, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Ranjeet Kumar", "Ajay Pradhan", "Faisal Ahmad Khan", "Pia Lindström", "Daniel Ragnvaldsson", "Per Ivarsson", "Per-Erik Olsson", "Jana Jass"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0132896.t001", "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Target_genes_used_in_the_qPCR_analysis_/1481995", "title"=>"Target genes used in the qPCR analysis.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-07-13 03:39:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/2174113"], "description"=>"<p>The PCA analysis was based on the gene expression pattern in <i>C</i>. <i>elegans</i> exposed to water samples from lake Hornträsket (H), Vormbäcken stream at Björkås (B), Vormbäcken stream at the outlet to Vindelälven (V), K-medium prepared with Milli-Q water (C) and metal cocktail (MC). A. Score plot showing the distribution following exposure to environmental waters and control water based on gene expression. The ellipse shows Hotellings T<sup>2</sup> (0.05). B. PCA loading plot showing the distribution of the measured variables following exposure to the environmental waters and the K-medium control. C. Score plot showing the distribution following exposure to the MC, environmental waters and control water based on gene expression. The ellipse shows Hotellings T<sup>2</sup> (0.05). D. PCA loading plot shows the distribution of the measured variables following exposure to the MC, environmental waters and the control (K-medium prepared with Milli-Q water).</p>", "links"=>[], "tags"=>["Lab Reconstituted Complex Metal Mixture Metals", "Stress Induced Gene Expression", "response", "Swedish mining site", "Caenorhabditis elegans", "lab reconstituted metal mixture", "stress", "reconstituted metal mixture"], "article_id"=>1481994, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Ranjeet Kumar", "Ajay Pradhan", "Faisal Ahmad Khan", "Pia Lindström", "Daniel Ragnvaldsson", "Per Ivarsson", "Per-Erik Olsson", "Jana Jass"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0132896.g007", "stats"=>{"downloads"=>0, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Principal_component_analysis_/1481994", "title"=>"Principal component analysis.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-13 03:39:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/2174107"], "description"=>"<p>Synchronized <i>C</i>. <i>elegans</i> treated with the metal cocktail (MC) or waters from Lake Hornträsket (H) and Vormbäcken stream at Björkås (B) and the exit to Vindelälven (V) were analyzed for the expression of <i>gst-4</i>, <i>sod-1</i>, <i>cat-2</i>, <i>cyp-35A2</i>, <i>daf-2</i>, <i>nnt-1</i>, <i>kel-8</i> and <i>gcs-1</i> using qRT-PCR. One way analysis of variance (ANOVA) followed by Tukey’s post-test was used for multiple group comparison where * refers to <i>p</i><0.01 as compared to control and # represents significant differences in between sites H, B and V. The dotted line represents the expression level normalized to that of the control (K-medium prepared with Milli-Q water).</p>", "links"=>[], "tags"=>["Lab Reconstituted Complex Metal Mixture Metals", "Stress Induced Gene Expression", "response", "Swedish mining site", "Caenorhabditis elegans", "lab reconstituted metal mixture", "stress", "reconstituted metal mixture"], "article_id"=>1481988, "categories"=>["Biological Sciences", "Ecology"], "users"=>["Ranjeet Kumar", "Ajay Pradhan", "Faisal Ahmad Khan", "Pia Lindström", "Daniel Ragnvaldsson", "Per Ivarsson", "Per-Erik Olsson", "Jana Jass"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0132896.g003", "stats"=>{"downloads"=>0, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Exposure_of_C_elegans_to_metals_affects_the_expression_of_oxidative_stress_response_genes_/1481988", "title"=>"Exposure of <i>C</i>. <i>elegans</i> to metals affects the expression of oxidative stress response genes.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-13 03:39:19"}

PMC Usage Stats | Further Information

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  • {"unique-ip"=>"17", "full-text"=>"18", "pdf"=>"5", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"8"}
  • {"unique-ip"=>"10", "full-text"=>"8", "pdf"=>"7", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2019", "month"=>"9"}
  • {"unique-ip"=>"8", "full-text"=>"9", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"10"}
  • {"unique-ip"=>"12", "full-text"=>"11", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"12"}
  • {"unique-ip"=>"14", "full-text"=>"16", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2020", "month"=>"2"}
  • {"unique-ip"=>"12", "full-text"=>"14", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2020", "month"=>"3"}
  • {"unique-ip"=>"9", "full-text"=>"6", "pdf"=>"4", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"4"}
  • {"unique-ip"=>"18", "full-text"=>"23", "pdf"=>"4", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"5"}
  • {"unique-ip"=>"12", "full-text"=>"9", "pdf"=>"4", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"6"}
  • {"unique-ip"=>"7", "full-text"=>"8", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"7"}
  • {"unique-ip"=>"6", "full-text"=>"7", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"8"}
  • {"unique-ip"=>"12", "full-text"=>"13", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"9"}
  • {"unique-ip"=>"16", "full-text"=>"21", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"10"}
  • {"unique-ip"=>"6", "full-text"=>"8", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2020", "month"=>"11"}
  • {"unique-ip"=>"9", "full-text"=>"6", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"12"}

Relative Metric

{"start_date"=>"2015-01-01T00:00:00Z", "end_date"=>"2015-12-31T00:00:00Z", "subject_areas"=>[]}
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