The Hidden Diversity of Zanclea Associated with Scleractinians Revealed by Molecular Data
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{"title"=>"The hidden diversity of zanclea associated with scleractinians revealed by molecular data", "type"=>"journal", "authors"=>[{"first_name"=>"Simone", "last_name"=>"Montano", "scopus_author_id"=>"36247389900"}, {"first_name"=>"Davide", "last_name"=>"Maggioni", "scopus_author_id"=>"55617471700"}, {"first_name"=>"Roberto", "last_name"=>"Arrigoni", "scopus_author_id"=>"6506510489"}, {"first_name"=>"Davide", "last_name"=>"Seveso", "scopus_author_id"=>"36247843900"}, {"first_name"=>"Stefania", "last_name"=>"Puce", "scopus_author_id"=>"6603330644"}, {"first_name"=>"Paolo", "last_name"=>"Galli", "scopus_author_id"=>"7006002437"}], "year"=>2015, "source"=>"PLoS ONE", "identifiers"=>{"scopus"=>"2-s2.0-84941892787", "sgr"=>"84941892787", "issn"=>"19326203", "doi"=>"10.1371/journal.pone.0133084", "pmid"=>"26207903", "isbn"=>"9783319210117", "pui"=>"605996939"}, "id"=>"be52398b-6d39-3977-a622-c24a98a7b50b", "abstract"=>"Scleractinian reef corals have recently been acknowledged as the most numerous host group found in association with hydroids belonging to the Zanclea genus. However, knowledge of the molecular phylogenetic relationships among Zanclea species associated with scleractinians is just beginning. This study, using the nuclear 28S rDNA region and the fast-evolving mitochondrial 16S rRNA and COI genes, provides the most comprehensive phylogenetic reconstruction of the genus Zanclea with a particular focus on the genetic diversity among Zanclea specimens associated with 13 scleractinian genera. The monophyly of Zanclea associated with scleractinians was strongly supported in all nuclear and mitochondrial phylogenetic reconstructions. Furthermore, a combined mitochondrial 16S and COI phylogenetic tree revealed a multitude of hidden molecular lineages within this group (Clades I, II, III, V, VI, VII, and VIII), suggesting the existence of both host-generalist and genus-specific lineages of Zanclea associated with scleractinians. In addition to Z. gallii living in association with the genus Acropora, we discovered four well-supported lineages (Clades I, II, III, and VII), each one forming a strict association with a single scleractinian genus, including sequences of Zanclea associated with Montipora from two geographically separated areas (Maldives and Taiwan). Two host-generalist Zanclea lineages were also observed, and one of them was formed by Zanclea specimens symbiotic with seven scleractinian genera (Clade VIII). We also found that the COI gene allows the recognition of separated hidden lineages in agreement with the commonly recommended mitochondrial 16S as a DNA barcoding gene for Hydrozoa and shows reasonable potential for phylogenetic and evolutionary analyses in the genus Zanclea. Finally, as no DNA sequences are available for the majority of the nominal Zanclea species known, we note that they will be necessary to elucidate the diversity of the Zanclea-scleractinian association.", "link"=>"http://www.mendeley.com/research/hidden-diversity-zanclea-associated-scleractinians-revealed-molecular-data", "reader_count"=>11, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Researcher"=>3, "Student > Ph. D. Student"=>4, "Student > Master"=>2}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Researcher"=>3, "Student > Ph. D. Student"=>4, "Student > Master"=>2}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>7}, "reader_count_by_subdiscipline"=>{"Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>7}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>2}, "Environmental Science"=>{"Environmental Science"=>1}}, "reader_count_by_country"=>{"Netherlands"=>1, "United States"=>1, "Brazil"=>1, "Spain"=>1}, "group_count"=>0}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/2189622"], "description"=>"<p><b>A</b>) <i>Goniastrea</i>; <b>B</b>) <i>Porites</i>; <b>C</b>) <i>Montipora</i>; <b>D</b>) <i>Acropora</i>; <b>E</b>) <i>Pavona</i>; <b>F</b>) <i>Favites</i>; <b>G</b>) <i>Dipsastrea</i>; <b>H</b>) <i>Echinopora</i>; <b>I</b>) <i>Platygyra</i>. (Scale bars: ~ 500 μm)</p>", "links"=>[], "tags"=>["13 scleractinian genera", "lineage", "vii", "Zanclea species", "genus Zanclea", "mitochondrial phylogenetic reconstructions", "28 S rDNA region", "Molecular Data Scleractinian reef corals", "viii", "DNA barcoding gene", "iii", "vi", "Zanclea specimens", "ii", "COI phylogenetic tree", "mitochondrial 16 S"], "article_id"=>1494110, "categories"=>["Biological Sciences"], "users"=>["Simone Montano", "Davide Maggioni", "Roberto Arrigoni", "Davide Seveso", "Stefania Puce", "Paolo Galli"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133084.g001", "stats"=>{"downloads"=>3, "page_views"=>74, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_In_situ_photographs_and_microphotographs_of_living_Zanclea_hydroids_associated_with_scleractinians_/1494110", "title"=>"<i>In situ</i> photographs and microphotographs of living <i>Zanclea</i> hydroids associated with scleractinians.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-24 04:07:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/2189627"], "description"=>"<p>*<i>Zanclea</i> sp. sequences from China available in GenBank.</p><p>n.c. not calculated</p><p>Standard deviations are indicated in brackets.</p><p>Pairwise comparisons of genetic distance within and between nominal species of <i>Zanclea</i> and/or clades of <i>Zanclea</i> associated with scleractinians based on the mitochondrial gene 16S.</p>", "links"=>[], "tags"=>["13 scleractinian genera", "lineage", "vii", "Zanclea species", "genus Zanclea", "mitochondrial phylogenetic reconstructions", "28 S rDNA region", "Molecular Data Scleractinian reef corals", "viii", "DNA barcoding gene", "iii", "vi", "Zanclea specimens", "ii", "COI phylogenetic tree", "mitochondrial 16 S"], "article_id"=>1494115, "categories"=>["Biological Sciences"], "users"=>["Simone Montano", "Davide Maggioni", "Roberto Arrigoni", "Davide Seveso", "Stefania Puce", "Paolo Galli"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133084.t002", "stats"=>{"downloads"=>4, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Pairwise_comparisons_and_genetic_distance_/1494115", "title"=>"Pairwise comparisons and genetic distance.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-07-24 04:07:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/2189654", "https://ndownloader.figshare.com/files/2189655", "https://ndownloader.figshare.com/files/2189656", "https://ndownloader.figshare.com/files/2189657"], "description"=>"<div><p>Scleractinian reef corals have recently been acknowledged as the most numerous host group found in association with hydroids belonging to the <i>Zanclea</i> genus. However, knowledge of the molecular phylogenetic relationships among <i>Zanclea</i> species associated with scleractinians is just beginning. This study, using the nuclear 28S rDNA region and the fast-evolving mitochondrial 16S rRNA and COI genes, provides the most comprehensive phylogenetic reconstruction of the genus <i>Zanclea</i> with a particular focus on the genetic diversity among <i>Zanclea</i> specimens associated with 13 scleractinian genera. The monophyly of <i>Zanclea</i> associated with scleractinians was strongly supported in all nuclear and mitochondrial phylogenetic reconstructions. Furthermore, a combined mitochondrial 16S and COI phylogenetic tree revealed a multitude of hidden molecular lineages within this group (Clades I, II, III, V, VI, VII, and VIII), suggesting the existence of both host-generalist and genus-specific lineages of <i>Zanclea</i> associated with scleractinians. In addition to <i>Z</i>. <i>gallii</i> living in association with the genus <i>Acropora</i>, we discovered four well-supported lineages (Clades I, II, III, and VII), each one forming a strict association with a single scleractinian genus, including sequences of <i>Zanclea</i> associated with <i>Montipora</i> from two geographically separated areas (Maldives and Taiwan). Two host-generalist <i>Zanclea</i> lineages were also observed, and one of them was formed by <i>Zanclea</i> specimens symbiotic with seven scleractinian genera (Clade VIII). We also found that the COI gene allows the recognition of separated hidden lineages in agreement with the commonly recommended mitochondrial 16S as a DNA barcoding gene for Hydrozoa and shows reasonable potential for phylogenetic and evolutionary analyses in the genus <i>Zanclea</i>. Finally, as no DNA sequences are available for the majority of the nominal <i>Zanclea</i> species known, we note that they will be necessary to elucidate the diversity of the <i>Zanclea</i>-scleractinian association.</p></div>", "links"=>[], "tags"=>["13 scleractinian genera", "lineage", "vii", "Zanclea species", "genus Zanclea", "mitochondrial phylogenetic reconstructions", "28 S rDNA region", "Molecular Data Scleractinian reef corals", "viii", "DNA barcoding gene", "iii", "vi", "Zanclea specimens", "ii", "COI phylogenetic tree", "mitochondrial 16 S"], "article_id"=>1494142, "categories"=>["Biological Sciences"], "users"=>["Simone Montano", "Davide Maggioni", "Roberto Arrigoni", "Davide Seveso", "Stefania Puce", "Paolo Galli"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0133084.s001", "https://dx.doi.org/10.1371/journal.pone.0133084.s002", "https://dx.doi.org/10.1371/journal.pone.0133084.s003", "https://dx.doi.org/10.1371/journal.pone.0133084.s004"], "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/The_Hidden_Diversity_of_Zanclea_Associated_with_Scleractinians_Revealed_by_Molecular_Data/1494142", "title"=>"The Hidden Diversity of <i>Zanclea</i> Associated with Scleractinians Revealed by Molecular Data", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2015-07-24 04:07:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/2189626"], "description"=>"<p><b>Boldface</b> indicates newly obtained sequences.</p><p>List of specimens included in the analysis, with specimen code, locality and GenBank accession numbers, when available.</p>", "links"=>[], "tags"=>["13 scleractinian genera", "lineage", "vii", "Zanclea species", "genus Zanclea", "mitochondrial phylogenetic reconstructions", "28 S rDNA region", "Molecular Data Scleractinian reef corals", "viii", "DNA barcoding gene", "iii", "vi", "Zanclea specimens", "ii", "COI phylogenetic tree", "mitochondrial 16 S"], "article_id"=>1494114, "categories"=>["Biological Sciences"], "users"=>["Simone Montano", "Davide Maggioni", "Roberto Arrigoni", "Davide Seveso", "Stefania Puce", "Paolo Galli"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133084.t001", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_List_of_specimens_/1494114", "title"=>"List of specimens.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-07-24 04:07:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/2189629"], "description"=>"<p><sup>a</sup> present study;</p><p><sup>b</sup> Fontana et al. 2012;</p><p><sup>c</sup> Montano et al. 2015.</p><p>Morphological characters of the clades resulted from the molecular analyses.</p>", "links"=>[], "tags"=>["13 scleractinian genera", "lineage", "vii", "Zanclea species", "genus Zanclea", "mitochondrial phylogenetic reconstructions", "28 S rDNA region", "Molecular Data Scleractinian reef corals", "viii", "DNA barcoding gene", "iii", "vi", "Zanclea specimens", "ii", "COI phylogenetic tree", "mitochondrial 16 S"], "article_id"=>1494117, "categories"=>["Biological Sciences"], "users"=>["Simone Montano", "Davide Maggioni", "Roberto Arrigoni", "Davide Seveso", "Stefania Puce", "Paolo Galli"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133084.t004", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Morphological_differences_among_clades_/1494117", "title"=>"Morphological differences among clades.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-07-24 04:07:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/2189628"], "description"=>"<p>*<i>Zanclea</i> sequences from China available in GenBank.</p><p>Standard deviations are indicated in brackets.</p><p>Pairwise comparisons of genetic distance within and between species of <i>Zanclea</i> and/or clades of <i>Zanclea</i> associated with scleractinians based on the mitochondrial gene COI.</p>", "links"=>[], "tags"=>["13 scleractinian genera", "lineage", "vii", "Zanclea species", "genus Zanclea", "mitochondrial phylogenetic reconstructions", "28 S rDNA region", "Molecular Data Scleractinian reef corals", "viii", "DNA barcoding gene", "iii", "vi", "Zanclea specimens", "ii", "COI phylogenetic tree", "mitochondrial 16 S"], "article_id"=>1494116, "categories"=>["Biological Sciences"], "users"=>["Simone Montano", "Davide Maggioni", "Roberto Arrigoni", "Davide Seveso", "Stefania Puce", "Paolo Galli"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133084.t003", "stats"=>{"downloads"=>4, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Pairwise_comparisons_and_genetic_distance_/1494116", "title"=>"Pairwise comparisons and genetic distance.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-07-24 04:07:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/2189625"], "description"=>"<p><b>A</b>) Phylogenetic tree based on the combined mitochondrial genes 16S and COI inferred by Bayesian inference. The clade support values are <i>a posteriori</i> probabilities (≥ 0.7), bootstrap values from Maximum Likelihood (≥ 70), and bootstrap values from Maximum Parsimony (≥ 70), in this order. Clades of <i>Zanclea</i> associated with scleractinians are boxed in different colors depending on the host coral genera. <b>B-C</b>) Most parsimonious median-joining networks of <i>Zanclea</i> associated with scleractinians inferred from mitochondrial genes 16S (<b>B</b>) and COI (<b>C</b>). The size of circles is proportional to the frequencies of specimens sharing the same haplotype. The colors of circles referred to clades found in 3A. *<i>Zanclea</i> sp. sequences from Fontana et al. [<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0133084#pone.0133084.ref026\" target=\"_blank\">26</a>]</p>", "links"=>[], "tags"=>["13 scleractinian genera", "lineage", "vii", "Zanclea species", "genus Zanclea", "mitochondrial phylogenetic reconstructions", "28 S rDNA region", "Molecular Data Scleractinian reef corals", "viii", "DNA barcoding gene", "iii", "vi", "Zanclea specimens", "ii", "COI phylogenetic tree", "mitochondrial 16 S"], "article_id"=>1494113, "categories"=>["Biological Sciences"], "users"=>["Simone Montano", "Davide Maggioni", "Roberto Arrigoni", "Davide Seveso", "Stefania Puce", "Paolo Galli"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133084.g003", "stats"=>{"downloads"=>6, "page_views"=>126, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_trees_and_haplotype_network_analyses_based_on_mithocondrial_16S_and_COI_genes_/1494113", "title"=>"Phylogenetic trees and haplotype network analyses based on mithocondrial 16S and COI genes.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-24 04:07:09"}
  • {"files"=>["https://ndownloader.figshare.com/files/2189623"], "description"=>"<p>The clade support values are <i>a posteriori</i> probabilities, bootstrap values from Maximum Likelihood, and bootstrap values from Maximum Parsimony, in this order. The node supporting the scleractinian-associated <i>Zanclea</i> clade is highlighted in red.</p>", "links"=>[], "tags"=>["13 scleractinian genera", "lineage", "vii", "Zanclea species", "genus Zanclea", "mitochondrial phylogenetic reconstructions", "28 S rDNA region", "Molecular Data Scleractinian reef corals", "viii", "DNA barcoding gene", "iii", "vi", "Zanclea specimens", "ii", "COI phylogenetic tree", "mitochondrial 16 S"], "article_id"=>1494111, "categories"=>["Biological Sciences"], "users"=>["Simone Montano", "Davide Maggioni", "Roberto Arrigoni", "Davide Seveso", "Stefania Puce", "Paolo Galli"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133084.g002", "stats"=>{"downloads"=>1, "page_views"=>17, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_tree_based_on_the_nuclear_gene_28S_inferred_by_Bayesian_inference_/1494111", "title"=>"Phylogenetic tree based on the nuclear gene 28S inferred by Bayesian inference.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-24 04:07:09"}

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{"start_date"=>"2015-01-01T00:00:00Z", "end_date"=>"2015-12-31T00:00:00Z", "subject_areas"=>[]}
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