A Genomic, Transcriptomic and Proteomic Look at the GE2270 Producer Planobispora rosea, an Uncommon Actinomycete
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{"title"=>"A genomic, transcriptomic and proteomic look at the GE2270 producer Planobispora rosea, an uncommon actinomycete", "type"=>"journal", "authors"=>[{"first_name"=>"Arianna", "last_name"=>"Tocchetti", "scopus_author_id"=>"6602639302"}, {"first_name"=>"Roberta", "last_name"=>"Bordoni", "scopus_author_id"=>"6701370343"}, {"first_name"=>"Giuseppe", "last_name"=>"Gallo", "scopus_author_id"=>"9040938400"}, {"first_name"=>"Luca", "last_name"=>"Petiti", "scopus_author_id"=>"48161775000"}, {"first_name"=>"Giorgio", "last_name"=>"Corti", "scopus_author_id"=>"7006220323"}, {"first_name"=>"Silke", "last_name"=>"Alt", "scopus_author_id"=>"15922456200"}, {"first_name"=>"Joao C.S.", "last_name"=>"Cruz", "scopus_author_id"=>"56857149100"}, {"first_name"=>"Anna Maria", "last_name"=>"Salzano", "scopus_author_id"=>"7006329116"}, {"first_name"=>"Andrea", "last_name"=>"Scaloni", "scopus_author_id"=>"7007083035"}, {"first_name"=>"Anna Maria", "last_name"=>"Puglia", "scopus_author_id"=>"6701322267"}, {"first_name"=>"Gianluca", "last_name"=>"De Bellis", "scopus_author_id"=>"7005285574"}, {"first_name"=>"Clelia", "last_name"=>"Peano", "scopus_author_id"=>"13403279300"}, {"first_name"=>"Stefano", "last_name"=>"Donadio", "scopus_author_id"=>"7004041046"}, {"first_name"=>"Margherita", "last_name"=>"Sosio", "scopus_author_id"=>"6603671930"}], "year"=>2015, "source"=>"PLoS ONE", "identifiers"=>{"pmid"=>"26207753", "doi"=>"10.1371/journal.pone.0133705", "sgr"=>"84941978988", "isbn"=>"1932-6203 (Electronic)\r1932-6203 (Linking)", "scopus"=>"2-s2.0-84941978988", "issn"=>"19326203", "pui"=>"605997332"}, "id"=>"22c0fb80-1102-3c81-8560-95c0b27c085a", "abstract"=>"We report the genome sequence of Planobispora rosea ATCC 53733, a mycelium-forming soil-dweller belonging to one of the lesser studied genera of Actinobacteria and producing the thiopeptide GE2270. The P. rosea genome presents considerable convergence in gene organization and function with other members in the family Streptosporangiaceae, with a significant number (44%) of shared orthologs. Patterns of gene expression in P. rosea cultures during exponential and stationary phase have been analyzed using whole transcriptome shotgun sequencing and by proteome analysis. Among the differentially abundant proteins, those involved in protein metabolism are particularly represented, including the GE2270-insensitive EF-Tu. Two proteins from the pbt cluster, directing GE2270 biosynthesis, slightly increase their abundance values over time. While GE2270 production starts during the exponential phase, most pbt genes, as analyzed by qRT-PCR, are down-regulated. The exception is represented by pbtA, encoding the precursor peptide of the ribosomally synthesized GE2270, whose expression reached the highest level at the entry into stationary phase.", "link"=>"http://www.mendeley.com/research/genomic-transcriptomic-proteomic-look-ge2270-producer-planobispora-rosea-uncommon-actinomycete", "reader_count"=>14, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Researcher"=>6, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>1, "Student > Postgraduate"=>1, "Student > Master"=>1, "Other"=>1, "Lecturer > Senior Lecturer"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Researcher"=>6, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>1, "Student > Postgraduate"=>1, "Student > Master"=>1, "Other"=>1, "Lecturer > Senior Lecturer"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>5, "Agricultural and Biological Sciences"=>6, "Pharmacology, Toxicology and Pharmaceutical Science"=>1}, "reader_count_by_subdiscipline"=>{"Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>6}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>5}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>1}, "Pharmacology, Toxicology and Pharmaceutical Science"=>{"Pharmacology, Toxicology and Pharmaceutical Science"=>1}}, "reader_count_by_country"=>{"Italy"=>1}, "group_count"=>0}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/2188355"], "description"=>"<p>Clusters of secondary metabolites identified by Antismash [<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0133705#pone.0133705.ref017\" target=\"_blank\">17</a>] in <i>P</i>. <i>rosea</i>, putative products and their conservation in <i>S</i>. <i>roseum or Microbispora</i>. Coordinates refer to the <i>S</i>. <i>roseum</i> [<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0133705#pone.0133705.ref012\" target=\"_blank\">12</a>] and <i>Microbispora</i> sp. genome [<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0133705#pone.0133705.ref013\" target=\"_blank\">13</a>]</p><p><sup>a</sup> as identified by Antismash followed by manual curation;</p><p><sup>b</sup> as identified by Antismash except for cluster 2 which corresponds to GE2270 cluster;</p><p><sup>c</sup> as defined under Methods. Entries in bold type refer to equivalent genome position. Cluster for secondary metabolites were considered invariant when they shared CDSs involved in the structural scaffold and at least 50% of additional CDSs.</p><p>List of <i>P</i>. <i>rosea</i> clusters identified by Antismash.</p>", "links"=>[], "tags"=>["genome sequence", "Protein metabolism", "Uncommon Actinomycete", "gene expression", "atcc", "abundance values", "Proteome Analysis", "pbt genes", "rosea genome", "transcriptome shotgun sequencing", "gene organization", "precursor peptide", "family Streptosporangiaceae", "GE 2270 production", "GE 2270 biosynthesis", "thiopeptide GE 2270.", "pbt cluster", "phase", "GE 2270 Producer Planobispora rosea", "rosea cultures"], "article_id"=>1493120, "categories"=>["Uncategorised"], "users"=>["Arianna Tocchetti", "Roberta Bordoni", "Giuseppe Gallo", "Luca Petiti", "Giorgio Corti", "Silke Alt", "Joao C. S. Cruz", "Anna Maria Salzano", "Andrea Scaloni", "Anna Maria Puglia", "Gianluca De Bellis", "Clelia Peano", "Stefano Donadio", "Margherita Sosio"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133705.t002", "stats"=>{"downloads"=>10, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_List_of_P_rosea_clusters_identified_by_Antismash_/1493120", "title"=>"List of <i>P</i>. <i>rosea</i> clusters identified by Antismash.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-07-24 02:48:06"}
  • {"files"=>["https://ndownloader.figshare.com/files/2188367", "https://ndownloader.figshare.com/files/2188368", "https://ndownloader.figshare.com/files/2188369", "https://ndownloader.figshare.com/files/2188370", "https://ndownloader.figshare.com/files/2188371", "https://ndownloader.figshare.com/files/2188372", "https://ndownloader.figshare.com/files/2188373", "https://ndownloader.figshare.com/files/2188374", "https://ndownloader.figshare.com/files/2188375", "https://ndownloader.figshare.com/files/2188376", "https://ndownloader.figshare.com/files/2188377", "https://ndownloader.figshare.com/files/2188378", "https://ndownloader.figshare.com/files/2188379", "https://ndownloader.figshare.com/files/2188380"], "description"=>"<div><p>We report the genome sequence of <i>Planobispora rosea</i> ATCC 53733, a mycelium-forming soil-dweller belonging to one of the lesser studied genera of <i>Actinobacteria</i> and producing the thiopeptide GE2270. The <i>P</i>. <i>rosea</i> genome presents considerable convergence in gene organization and function with other members in the family <i>Streptosporangiaceae</i>, with a significant number (44%) of shared orthologs. Patterns of gene expression in <i>P</i>. <i>rosea</i> cultures during exponential and stationary phase have been analyzed using whole transcriptome shotgun sequencing and by proteome analysis. Among the differentially abundant proteins, those involved in protein metabolism are particularly represented, including the GE2270-insensitive EF-Tu. Two proteins from the <i>pbt</i> cluster, directing GE2270 biosynthesis, slightly increase their abundance values over time. While GE2270 production starts during the exponential phase, most <i>pbt</i> genes, as analyzed by qRT-PCR, are down-regulated. The exception is represented by <i>pbtA</i>, encoding the precursor peptide of the ribosomally synthesized GE2270, whose expression reached the highest level at the entry into stationary phase.</p></div>", "links"=>[], "tags"=>["genome sequence", "Protein metabolism", "Uncommon Actinomycete", "gene expression", "atcc", "abundance values", "Proteome Analysis", "pbt genes", "rosea genome", "transcriptome shotgun sequencing", "gene organization", "precursor peptide", "family Streptosporangiaceae", "GE 2270 production", "GE 2270 biosynthesis", "thiopeptide GE 2270.", "pbt cluster", "phase", "GE 2270 Producer Planobispora rosea", "rosea cultures"], "article_id"=>1493127, "categories"=>["Uncategorised"], "users"=>["Arianna Tocchetti", "Roberta Bordoni", "Giuseppe Gallo", "Luca Petiti", "Giorgio Corti", "Silke Alt", "Joao C. S. Cruz", "Anna Maria Salzano", "Andrea Scaloni", "Anna Maria Puglia", "Gianluca De Bellis", "Clelia Peano", "Stefano Donadio", "Margherita Sosio"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0133705.s001", "https://dx.doi.org/10.1371/journal.pone.0133705.s002", "https://dx.doi.org/10.1371/journal.pone.0133705.s003", "https://dx.doi.org/10.1371/journal.pone.0133705.s004", "https://dx.doi.org/10.1371/journal.pone.0133705.s005", "https://dx.doi.org/10.1371/journal.pone.0133705.s006", "https://dx.doi.org/10.1371/journal.pone.0133705.s007", "https://dx.doi.org/10.1371/journal.pone.0133705.s008", "https://dx.doi.org/10.1371/journal.pone.0133705.s009", "https://dx.doi.org/10.1371/journal.pone.0133705.s010", "https://dx.doi.org/10.1371/journal.pone.0133705.s011", "https://dx.doi.org/10.1371/journal.pone.0133705.s012", "https://dx.doi.org/10.1371/journal.pone.0133705.s013", "https://dx.doi.org/10.1371/journal.pone.0133705.s014"], "stats"=>{"downloads"=>7, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/A_Genomic_Transcriptomic_and_Proteomic_Look_at_the_GE2270_Producer_Planobispora_rosea_an_Uncommon_Actinomycete/1493127", "title"=>"A Genomic, Transcriptomic and Proteomic Look at the GE2270 Producer <i>Planobispora rosea</i>, an Uncommon Actinomycete", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2015-07-24 02:48:06"}
  • {"files"=>["https://ndownloader.figshare.com/files/2188344"], "description"=>"<p>Outer grey circle corresponds to the scaffolds and nucleotide length, with the replication origin (<i>oriC</i>) placed as nucleotide 1. Blue segments designate secondary metabolite clusters as reported in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0133705#pone.0133705.t002\" target=\"_blank\">Table 2</a>. The other circles denote the distribution of CDSs according to the functional categories of <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0133705#pone.0133705.s008\" target=\"_blank\">S1 Table</a> (from edge to center): C to R, T and U. GC skew is represented by the inner circle.</p>", "links"=>[], "tags"=>["genome sequence", "Protein metabolism", "Uncommon Actinomycete", "gene expression", "atcc", "abundance values", "Proteome Analysis", "pbt genes", "rosea genome", "transcriptome shotgun sequencing", "gene organization", "precursor peptide", "family Streptosporangiaceae", "GE 2270 production", "GE 2270 biosynthesis", "thiopeptide GE 2270.", "pbt cluster", "phase", "GE 2270 Producer Planobispora rosea", "rosea cultures"], "article_id"=>1493109, "categories"=>["Uncategorised"], "users"=>["Arianna Tocchetti", "Roberta Bordoni", "Giuseppe Gallo", "Luca Petiti", "Giorgio Corti", "Silke Alt", "Joao C. S. Cruz", "Anna Maria Salzano", "Andrea Scaloni", "Anna Maria Puglia", "Gianluca De Bellis", "Clelia Peano", "Stefano Donadio", "Margherita Sosio"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133705.g001", "stats"=>{"downloads"=>2, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Representation_of_the_P_rosea_genome_/1493109", "title"=>"Representation of the <i>P</i>. <i>rosea</i> genome.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-24 02:48:06"}
  • {"files"=>["https://ndownloader.figshare.com/files/2188347"], "description"=>"<p>Dots represent reciprocal best hits obtained by pairwise BlastN searches. Numbers indicate genome coordinates in Mbp, with <i>dnaA</i> located at nucleotide 1 for each genome. The shaded box refers to the divergent segment in the <i>P</i>. <i>rosea</i> genome, where clusters 7 through 13 (<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0133705#pone.0133705.t002\" target=\"_blank\">Table 2</a>) are located. The dashed vertical line denotes the position of the <i>pbt</i> cluster.</p>", "links"=>[], "tags"=>["genome sequence", "Protein metabolism", "Uncommon Actinomycete", "gene expression", "atcc", "abundance values", "Proteome Analysis", "pbt genes", "rosea genome", "transcriptome shotgun sequencing", "gene organization", "precursor peptide", "family Streptosporangiaceae", "GE 2270 production", "GE 2270 biosynthesis", "thiopeptide GE 2270.", "pbt cluster", "phase", "GE 2270 Producer Planobispora rosea", "rosea cultures"], "article_id"=>1493112, "categories"=>["Uncategorised"], "users"=>["Arianna Tocchetti", "Roberta Bordoni", "Giuseppe Gallo", "Luca Petiti", "Giorgio Corti", "Silke Alt", "Joao C. S. Cruz", "Anna Maria Salzano", "Andrea Scaloni", "Anna Maria Puglia", "Gianluca De Bellis", "Clelia Peano", "Stefano Donadio", "Margherita Sosio"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133705.g002", "stats"=>{"downloads"=>2, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Synteny_of_the_P_rosea_genome_in_comparison_with_S_roseum_panel_A_and_Microbispora_sp_panel_B_/1493112", "title"=>"Synteny of the <i>P</i>. <i>rosea</i> genome in comparison with <i>S</i>. <i>roseum</i> (panel A) and <i>Microbispora</i> sp. (panel B).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-24 02:48:06"}
  • {"files"=>["https://ndownloader.figshare.com/files/2188349"], "description"=>"<p>The Venn diagrams represent the number of orthologs found in the <i>P</i>. <i>rosea</i>, <i>S</i>. <i>roseum</i> and <i>Microbispora</i> genomes (A) or in these three genomes and <i>S</i>. <i>coelicolor</i> (B). \"STPG\" refers to the orthologs shared by the three <i>Streptosporangiaceae</i> genomes; \"ACTB\" to the orthologs common also with <i>S</i>. <i>coelicolor</i>; and \"PLBR\" to the unique <i>P</i>. <i>rosea</i> genes.</p>", "links"=>[], "tags"=>["genome sequence", "Protein metabolism", "Uncommon Actinomycete", "gene expression", "atcc", "abundance values", "Proteome Analysis", "pbt genes", "rosea genome", "transcriptome shotgun sequencing", "gene organization", "precursor peptide", "family Streptosporangiaceae", "GE 2270 production", "GE 2270 biosynthesis", "thiopeptide GE 2270.", "pbt cluster", "phase", "GE 2270 Producer Planobispora rosea", "rosea cultures"], "article_id"=>1493114, "categories"=>["Uncategorised"], "users"=>["Arianna Tocchetti", "Roberta Bordoni", "Giuseppe Gallo", "Luca Petiti", "Giorgio Corti", "Silke Alt", "Joao C. S. Cruz", "Anna Maria Salzano", "Andrea Scaloni", "Anna Maria Puglia", "Gianluca De Bellis", "Clelia Peano", "Stefano Donadio", "Margherita Sosio"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133705.g003", "stats"=>{"downloads"=>0, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Shared_CDSs_among_selected_genomes_/1493114", "title"=>"Shared CDSs among selected genomes.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-24 02:48:06"}
  • {"files"=>["https://ndownloader.figshare.com/files/2188350"], "description"=>"<p>Flask cultivation of <i>P</i>. <i>rosea</i> was performed in V6 medium. Biomass accumulation was calculated from dry cell weight measurements, while GE2270A production was obtained after whole culture extraction. Each point represents the mean and standard deviation of three independent cultures. The arrows indicate the time points of sample collection for transcriptomic and proteomic analyses. See <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0133705#sec011\" target=\"_blank\">Materials and Methods</a> for experimental details.</p>", "links"=>[], "tags"=>["genome sequence", "Protein metabolism", "Uncommon Actinomycete", "gene expression", "atcc", "abundance values", "Proteome Analysis", "pbt genes", "rosea genome", "transcriptome shotgun sequencing", "gene organization", "precursor peptide", "family Streptosporangiaceae", "GE 2270 production", "GE 2270 biosynthesis", "thiopeptide GE 2270.", "pbt cluster", "phase", "GE 2270 Producer Planobispora rosea", "rosea cultures"], "article_id"=>1493115, "categories"=>["Uncategorised"], "users"=>["Arianna Tocchetti", "Roberta Bordoni", "Giuseppe Gallo", "Luca Petiti", "Giorgio Corti", "Silke Alt", "Joao C. S. Cruz", "Anna Maria Salzano", "Andrea Scaloni", "Anna Maria Puglia", "Gianluca De Bellis", "Clelia Peano", "Stefano Donadio", "Margherita Sosio"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133705.g004", "stats"=>{"downloads"=>0, "page_views"=>28, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_P_rosea_growth_glucose_consumption_and_GE2270_production_/1493115", "title"=>"<i>P</i>. <i>rosea</i> growth, glucose consumption and GE2270 production.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-24 02:48:06"}
  • {"files"=>["https://ndownloader.figshare.com/files/2188351"], "description"=>"<p>Mean trend of each group is reported as red line and relative abundance of single protein species is showed as light blue line with the exception of abundance trends of <i>ptb</i> gene products which are reported as green line in panel B.</p>", "links"=>[], "tags"=>["genome sequence", "Protein metabolism", "Uncommon Actinomycete", "gene expression", "atcc", "abundance values", "Proteome Analysis", "pbt genes", "rosea genome", "transcriptome shotgun sequencing", "gene organization", "precursor peptide", "family Streptosporangiaceae", "GE 2270 production", "GE 2270 biosynthesis", "thiopeptide GE 2270.", "pbt cluster", "phase", "GE 2270 Producer Planobispora rosea", "rosea cultures"], "article_id"=>1493116, "categories"=>["Uncategorised"], "users"=>["Arianna Tocchetti", "Roberta Bordoni", "Giuseppe Gallo", "Luca Petiti", "Giorgio Corti", "Silke Alt", "Joao C. S. Cruz", "Anna Maria Salzano", "Andrea Scaloni", "Anna Maria Puglia", "Gianluca De Bellis", "Clelia Peano", "Stefano Donadio", "Margherita Sosio"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133705.g005", "stats"=>{"downloads"=>0, "page_views"=>17, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Abundance_trends_of_ribosomal_A_and_secondary_metabolism_B_proteins_/1493116", "title"=>"Abundance trends of ribosomal (A) and secondary metabolism (B) proteins.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-24 02:48:06"}
  • {"files"=>["https://ndownloader.figshare.com/files/2188352"], "description"=>"<p>HeatMap representation of differentially expressed genes from <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0133705#pone.0133705.t002\" target=\"_blank\">Table 2</a> with p-value<0.05. Genes were hierarchically clustered at sample and gene level on the basis of Euclidean distances (left hand side of the figure). The correspondence of each gene to the clusters of <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0133705#pone.0133705.t002\" target=\"_blank\">Table 2</a> is also shown.</p>", "links"=>[], "tags"=>["genome sequence", "Protein metabolism", "Uncommon Actinomycete", "gene expression", "atcc", "abundance values", "Proteome Analysis", "pbt genes", "rosea genome", "transcriptome shotgun sequencing", "gene organization", "precursor peptide", "family Streptosporangiaceae", "GE 2270 production", "GE 2270 biosynthesis", "thiopeptide GE 2270.", "pbt cluster", "phase", "GE 2270 Producer Planobispora rosea", "rosea cultures"], "article_id"=>1493117, "categories"=>["Uncategorised"], "users"=>["Arianna Tocchetti", "Roberta Bordoni", "Giuseppe Gallo", "Luca Petiti", "Giorgio Corti", "Silke Alt", "Joao C. S. Cruz", "Anna Maria Salzano", "Andrea Scaloni", "Anna Maria Puglia", "Gianluca De Bellis", "Clelia Peano", "Stefano Donadio", "Margherita Sosio"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133705.g006", "stats"=>{"downloads"=>2, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Trends_of_selected_DEGs_/1493117", "title"=>"Trends of selected DEGs.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-24 02:48:06"}
  • {"files"=>["https://ndownloader.figshare.com/files/2188353"], "description"=>"<p>The figure reports the relative FoldChange at 30, 48, 54 and 72 h (in order, left to right) relative to 24 h for each analyzed gene.</p>", "links"=>[], "tags"=>["genome sequence", "Protein metabolism", "Uncommon Actinomycete", "gene expression", "atcc", "abundance values", "Proteome Analysis", "pbt genes", "rosea genome", "transcriptome shotgun sequencing", "gene organization", "precursor peptide", "family Streptosporangiaceae", "GE 2270 production", "GE 2270 biosynthesis", "thiopeptide GE 2270.", "pbt cluster", "phase", "GE 2270 Producer Planobispora rosea", "rosea cultures"], "article_id"=>1493118, "categories"=>["Uncategorised"], "users"=>["Arianna Tocchetti", "Roberta Bordoni", "Giuseppe Gallo", "Luca Petiti", "Giorgio Corti", "Silke Alt", "Joao C. S. Cruz", "Anna Maria Salzano", "Andrea Scaloni", "Anna Maria Puglia", "Gianluca De Bellis", "Clelia Peano", "Stefano Donadio", "Margherita Sosio"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133705.g007", "stats"=>{"downloads"=>0, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_qRT_PCR_of_selected_pbt_genes_/1493118", "title"=>"qRT-PCR of selected <i>pbt</i> genes.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-07-24 02:48:06"}
  • {"files"=>["https://ndownloader.figshare.com/files/2188354"], "description"=>"<p>Genome features of <i>P</i>. <i>rosea</i>.</p>", "links"=>[], "tags"=>["genome sequence", "Protein metabolism", "Uncommon Actinomycete", "gene expression", "atcc", "abundance values", "Proteome Analysis", "pbt genes", "rosea genome", "transcriptome shotgun sequencing", "gene organization", "precursor peptide", "family Streptosporangiaceae", "GE 2270 production", "GE 2270 biosynthesis", "thiopeptide GE 2270.", "pbt cluster", "phase", "GE 2270 Producer Planobispora rosea", "rosea cultures"], "article_id"=>1493119, "categories"=>["Uncategorised"], "users"=>["Arianna Tocchetti", "Roberta Bordoni", "Giuseppe Gallo", "Luca Petiti", "Giorgio Corti", "Silke Alt", "Joao C. S. Cruz", "Anna Maria Salzano", "Andrea Scaloni", "Anna Maria Puglia", "Gianluca De Bellis", "Clelia Peano", "Stefano Donadio", "Margherita Sosio"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0133705.t001", "stats"=>{"downloads"=>1, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Genome_features_of_P_rosea_/1493119", "title"=>"Genome features of <i>P</i>. <i>rosea</i>.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-07-24 02:48:06"}

PMC Usage Stats | Further Information

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  • {"unique-ip"=>"8", "full-text"=>"7", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"5"}
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  • {"unique-ip"=>"10", "full-text"=>"6", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"5", "cited-by"=>"0", "year"=>"2018", "month"=>"7"}
  • {"unique-ip"=>"6", "full-text"=>"3", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"6", "supp-data"=>"3", "cited-by"=>"0", "year"=>"2018", "month"=>"11"}
  • {"unique-ip"=>"5", "full-text"=>"6", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"8"}
  • {"unique-ip"=>"5", "full-text"=>"6", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"10"}
  • {"unique-ip"=>"5", "full-text"=>"5", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"2"}
  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"3"}
  • {"unique-ip"=>"8", "full-text"=>"11", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"4"}
  • {"unique-ip"=>"9", "full-text"=>"10", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"5"}

Relative Metric

{"start_date"=>"2015-01-01T00:00:00Z", "end_date"=>"2015-12-31T00:00:00Z", "subject_areas"=>[]}
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Net::HTTPTooManyRequests

Source
Scopus
Time
2019-08-27 19:05:35 UTC
Target URL
https://api.elsevier.com/content/search/index:SCOPUS?query=DOI(10.1371%2Fjournal.pone.0133705)
Trace

/app/models/concerns/networkable.rb:21:in `get_result'
/app/models/source.rb:165:in `get_data'
/app/models/retrieval_status.rb:47:in `perform_get_data'
/app/jobs/source_job.rb:52:in `block (2 levels) in perform'
/app/jobs/source_job.rb:51:in `block in perform'
/app/jobs/source_job.rb:35:in `each'
/app/jobs/source_job.rb:35:in `perform'