New Insights into Plagiogrammaceae (Bacillariophyta) Based on Multigene Phylogenies and Morphological Characteristics with the Description of a New Genus and Three New Species
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{"title"=>"New insights into plagiogrammaceae (bacillariophyta) based on multigene phylogenies and morphological characteristics with the description of a new genus and three new species", "type"=>"journal", "authors"=>[{"first_name"=>"Chun L.", "last_name"=>"Li", "scopus_author_id"=>"56441861100"}, {"first_name"=>"Matt P.", "last_name"=>"Ashworth", "scopus_author_id"=>"25959892900"}, {"first_name"=>"Andrzej", "last_name"=>"Witkowski", "scopus_author_id"=>"7005762392"}, {"first_name"=>"Przemyslaw", "last_name"=>"Dabek", "scopus_author_id"=>"57192961153"}, {"first_name"=>"Linda K.", "last_name"=>"Medlin", "scopus_author_id"=>"7003481997"}, {"first_name"=>"Wiebe H.C.F.", "last_name"=>"Kooistra", "scopus_author_id"=>"6701484061"}, {"first_name"=>"Shinya", "last_name"=>"Sato", "scopus_author_id"=>"55725611200"}, {"first_name"=>"Izabela", "last_name"=>"Zglobicka", "scopus_author_id"=>"55816999000"}, {"first_name"=>"Krzysztof J.", "last_name"=>"Kurzydlowski", "scopus_author_id"=>"7006335771"}, {"first_name"=>"Edward C.", "last_name"=>"Theriot", "scopus_author_id"=>"6701330223"}, {"first_name"=>"Jamal S.M.", "last_name"=>"Sabir", "scopus_author_id"=>"57194035277"}, {"first_name"=>"Mohammad A.", "last_name"=>"Khiyami", "scopus_author_id"=>"8404053400"}, {"first_name"=>"Mohammed H.Z.", "last_name"=>"Mutwakil", "scopus_author_id"=>"54939591400"}, {"first_name"=>"Meshaal J.", "last_name"=>"Sabir", "scopus_author_id"=>"25825595300"}, {"first_name"=>"Njud S.", "last_name"=>"Alharbi", "scopus_author_id"=>"55948333700"}, {"first_name"=>"Nahid H.", "last_name"=>"Hajarah", "scopus_author_id"=>"56974537800"}, {"first_name"=>"Song", "last_name"=>"Qing", "scopus_author_id"=>"56988848900"}, {"first_name"=>"Robert K.", "last_name"=>"Jansen", "scopus_author_id"=>"7201964167"}], "year"=>2015, "source"=>"PLoS ONE", "identifiers"=>{"doi"=>"10.1371/journal.pone.0139300", "issn"=>"19326203", "pui"=>"607111727", "pmid"=>"26465289", "sgr"=>"84948972897", "scopus"=>"2-s2.0-84948972897"}, "id"=>"1344575a-b9a8-374f-a679-9d8878671c91", "abstract"=>"Plagiogrammaceae, a poorly described family of diatoms, are common inhabitants of the shallow marine littoral zone, occurring either in the sediments or as epiphytes. Previous molecular phylogenies of the Plagiogrammaceae were inferred but included only up to six genera: Plagiogramma, Dimeregramma, Neofragilaria, Talaroneis, Psammogramma and Psammoneis. In this paper, we describe a new plagiogrammoid genus, Orizaformis, obtained from Bohai Sea (China) and present molecular phylogenies of the family based on three and four genes (nuclear-encoded large and small subunit ribosomal RNAs and chloroplast-encoded rbcL and psbC). Also included in the new phylogenies is Glyphodesmis. The phylogenies suggest that the Plagiogrammaceae is composed of two major clades: one consisting of Talaroneis, Orizaformis and Psammoneis, and the second of Glyphodesmis, Psammogramma, Neofragilaria, Dimeregramma and Plagiogramma. In addition, we describe three new species within established genera: Psammoneis obaidii, which was collected from the Red Sea, Saudi Arabia; and Neofragilaria stilus and Talaroneis biacutifrons from the Mozambique Channel, Indian Ocean, and illustrate two new combination taxa: Neofragilaria anomala and Neofragilaria lineata. Our observations suggest that the biodiversity of the family is strongly needed to be researched, and the phylogenetic analyses provide a useful framework for future studies of Plagiogrammaceae.", "link"=>"http://www.mendeley.com/research/new-insights-plagiogrammaceae-bacillariophyta-based-multigene-phylogenies-morphological-characterist", "reader_count"=>21, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Student > Ph. D. Student"=>6, "Student > Master"=>7, "Other"=>1, "Student > Bachelor"=>1, "Lecturer > Senior Lecturer"=>1, "Professor"=>3}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Student > Ph. D. Student"=>6, "Student > Master"=>7, "Other"=>1, "Student > Bachelor"=>1, "Lecturer > Senior Lecturer"=>1, "Professor"=>3}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Environmental Science"=>5, "Biochemistry, Genetics and Molecular Biology"=>3, "Materials Science"=>2, "Agricultural and Biological Sciences"=>8, "Earth and Planetary Sciences"=>1}, "reader_count_by_subdiscipline"=>{"Materials Science"=>{"Materials Science"=>2}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>8}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Unspecified"=>{"Unspecified"=>2}, "Environmental Science"=>{"Environmental Science"=>5}}, "reader_count_by_country"=>{"Ireland"=>1, "Malaysia"=>1}, "group_count"=>0}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/2358437"], "description"=>"<p>Taxa (<i>Neofragilaria stilus</i>, <i>Orizaformis holarctica</i> and <i>Psammoneis obaidii</i>) in bold are newly described species. Support values lower than 50% were omitted. The outgroup <i>Asterionella formosa</i> was removed from the tree.</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574400, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.g002", "stats"=>{"downloads"=>2, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Maximum_likelihood_phylogeny_of_26_strains_of_Plagiogrammacean_diatoms_with_bootstrap_values_at_nodes_was_inferred_from_four_markers_LSU_SSU_rDNA_rbc_L_and_psb_C_/1574400", "title"=>"Maximum likelihood phylogeny of 26 strains of Plagiogrammacean diatoms (with bootstrap values at nodes) was inferred from four markers (LSU, SSU rDNA, <i>rbc</i>L and <i>psb</i>C).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358473"], "description"=>"<p>Cleaned material SZCZ16205_1 from Juan de Nova in Mozambique Channel. (a) Cleaned material of valve view in different size. (b) Entire valve in valve view, showing subapical furrows on the apices and an acute spine located at each apex. (c) Entire valve view, valvocopula (see arrows) bearing a single row of puncta. (d) Detail of close ups of one apex of the specimen illustrated in Fig 10b. (e) Detail of the other apex of the specimen illustrated in Fig 10b</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574434, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.g010", "stats"=>{"downloads"=>2, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Talaroneis_biacutifrons_LM_a_and_SEM_b_e_/1574434", "title"=>"<i>Talaroneis biacutifrons</i>, LM (a) and SEM (b-e).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358443"], "description"=>"<p>Cultured material SZCZCH111 (a-h and i-n) and natural material SZCZ20822 (l-k). (a) Two cells linked by valve face, two plastids per cell. (b) Ribbon-like colony linked by valve corner forming zigzag filament. (c-e) Cleaned material in girdle view. (f-g) Cleaned material in valve view. (h) Cleaned frustule in culture composed of numerous girdle bands. (I) Cleaned frustule from wild population. (k) porous girdle bands of wild population. (l-m) Exterior valve, parallel striae along a distinct sternum. (n) Interior valve with well-developed apical pore fields, rimoportulae absent.</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574406, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.g003", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Orizaformis_holarctica_light_microscopy_LM_a_g_and_SEM_h_n_/1574406", "title"=>"<i>Orizaformis holarctica</i>, light microscopy (LM) (a-g) and SEM (h-n).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358479"], "description"=>"<p>(A) Absence of rimoportulae. (B) Unoccluded or occluded areolae. (C) Morphology of marginal spines: without, simple, branched. (D) Girdle band morphology.</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574440, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.g011", "stats"=>{"downloads"=>2, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Mapping_of_morphological_features_in_the_araphid_clade_onto_the_three_gene_tree_/1574440", "title"=>"Mapping of morphological features in the araphid clade onto the three-gene tree.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358445"], "description"=>"<p>Cultured material SZCZCH111. (a) Entire valve in girdle view. (b) Detail of the specimen illustrated in Fig 4a, it shows that girdle bands are composed of a single row of puncta with apically elongated areolae in the valve mantle. (c) Detail of the apex in the valve face. (d) Enlarged view of Fig 4c, showing circular areolae in the valve face.</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574408, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.g004", "stats"=>{"downloads"=>2, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Orizaformis_holarctica_TEM_/1574408", "title"=>"<i>Orizaformis holarctica</i>, TEM.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358481"], "description"=>"<p>(A) The shape of apical pores and decorated or plain apical pore field. (B) Four kinds of apical pore fields: apical pore fields in the valve face only; apical pore fields in mantle face only; apical pore fields are heteropolar and apical pore fields from valve face to mantle face. (C) Internally thickened costae.</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574441, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.g012", "stats"=>{"downloads"=>1, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Mapping_of_morphological_features_in_the_araphid_clade_onto_the_three_gene_tree_/1574441", "title"=>"Mapping of morphological features in the araphid clade onto the three-gene tree.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358482"], "description"=>"<p>Significance was set as alpha = 0.05. The difference in likelihood (ΔlnL) was calculated by subtracting the log likelihood score between the unconstrained and constrained best tree.</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574443, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.t001", "stats"=>{"downloads"=>1, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Shimodaira_Hasegawa_SH_test_for_the_topologically_unconstrained_trees_Figs_1_and_2_and_constrained_trees_S1_and_S2_Figs_in_three_gene_and_four_gene_analyses_/1574443", "title"=>"Shimodaira-Hasegawa (SH) test for the topologically unconstrained trees (Figs 1 and 2) and constrained trees (S1 and S2 Figs) in three-gene and four-gene analyses.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358449"], "description"=>"<p>Cultured material UTKSA0057. (a) Ribbon-like colony linked by valve face, two plastids per cell. (b-c) Cleaned material in valve view. (d) Exterior view, parallel striae arranged alternately across a distinct sternum and circular areolae in the valve face. (e) Tilted exterior view, showing circular areolae in the mantle. (f) Chain colony linked by valve face. (g) Internal view, rimoportula absent.</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574412, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.g005", "stats"=>{"downloads"=>1, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Psammoneis_obaidii_LM_a_c_and_SEM_d_g_/1574412", "title"=>"<i>Psammoneis obaidii</i>, LM (a-c) and SEM (d-g).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358454"], "description"=>"<p>(a) Valve view, drawings of Malcolm Giffen, without scale. (b) Scan of illustrations from Desikachary et al (1987), showing robust striae and a distinct sternum. (c-f) Valve view, showing robust striae and a distinct sternum. These images were taken from Slide Br 426/52 of Malcolm Giffen depsoited in Hustedt Diatom Collection at Alfred Wegener Institute in Bremerhaven. (g-i) External view, based on clean material SZCZ16502 of natural samples from Juan de Nova in Mozambique Channel deposited in Palaeoceanology Unit, Faculty of Geosciences, University of Szczecin. (j) Internal view, the material is the same as Fig 6g–6i. (k) Incomplete girdle band (see arrow), the material is the same as Fig 6g–6i.</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574415, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.g006", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Neofragilaria_anomala_drawings_Fig_a_LM_b_f_and_SEM_g_k_/1574415", "title"=>"<i>Neofragilaria anomala</i>, drawings (Fig a), LM (b-f) and SEM (g-k).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358456"], "description"=>"<p>(a-b) The valve view of drawings by Malcolm Giffen, without scale. (c-d) Valve view in LM, these images were taken from slide Br 426/53 deposited in Hustedt Diatom Collection at Alfred Wegener Institute in Bremerhaven.</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574417, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.g007", "stats"=>{"downloads"=>5, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Neofragilaria_lineata_/1574417", "title"=>"<i>Neofragilaria lineata</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358503", "https://ndownloader.figshare.com/files/2358504", "https://ndownloader.figshare.com/files/2358505", "https://ndownloader.figshare.com/files/2358506", "https://ndownloader.figshare.com/files/2358507", "https://ndownloader.figshare.com/files/2358508", "https://ndownloader.figshare.com/files/2358509"], "description"=>"<div><p>Plagiogrammaceae, a poorly described family of diatoms, are common inhabitants of the shallow marine littoral zone, occurring either in the sediments or as epiphytes. Previous molecular phylogenies of the Plagiogrammaceae were inferred but included only up to six genera: <i>Plagiogramma</i>, <i>Dimeregramma</i>, <i>Neofragilaria</i>, <i>Talaroneis</i>, <i>Psammogramma</i> and <i>Psammoneis</i>. In this paper, we describe a new plagiogrammoid genus, <i>Orizaformis</i>, obtained from Bohai Sea (China) and present molecular phylogenies of the family based on three and four genes (nuclear-encoded large and small subunit ribosomal RNAs and chloroplast-encoded <i>rbc</i>L and <i>psb</i>C). Also included in the new phylogenies is <i>Glyphodesmis</i>. The phylogenies suggest that the Plagiogrammaceae is composed of two major clades: one consisting of <i>Talaroneis</i>, <i>Orizaformis</i> and <i>Psammoneis</i>, and the second of <i>Glyphodesmis</i>, <i>Psammogramma</i>, <i>Neofragilaria</i>, <i>Dimeregramma</i> and <i>Plagiogramma</i>. In addition, we describe three new species within established genera: <i>Psammoneis obaidii</i>, which was collected from the Red Sea, Saudi Arabia; and <i>Neofragilaria stilus</i> and <i>Talaroneis biacutifrons</i> from the Mozambique Channel, Indian Ocean, and illustrate two new combination taxa: <i>Neofragilaria anomala</i> and <i>Neofragilaria lineata</i>. Our observations suggest that the biodiversity of the family is strongly needed to be researched, and the phylogenetic analyses provide a useful framework for future studies of Plagiogrammaceae.</p></div>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574463, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0139300.s001", "https://dx.doi.org/10.1371/journal.pone.0139300.s002", "https://dx.doi.org/10.1371/journal.pone.0139300.s003", "https://dx.doi.org/10.1371/journal.pone.0139300.s004", "https://dx.doi.org/10.1371/journal.pone.0139300.s005", "https://dx.doi.org/10.1371/journal.pone.0139300.s006", "https://dx.doi.org/10.1371/journal.pone.0139300.s007"], "stats"=>{"downloads"=>6, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_New_Insights_into_Plagiogrammaceae_Bacillariophyta_Based_on_Multigene_Phylogenies_and_Morphological_Characteristics_with_the_Description_of_a_New_Genus_and_Three_New_Species_/1574463", "title"=>"New Insights into Plagiogrammaceae (Bacillariophyta) Based on Multigene Phylogenies and Morphological Characteristics with the Description of a New Genus and Three New Species", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358468"], "description"=>"<p>Cultured material SZCZM116. (a) Zigzag colony linked by valve corners, frustule rectangular in girdle view, two plastids per cell. (b) Cleaned material in valve view, linear to lanceolate, robust striae. (c) Exterior view of natural sample, showing elaborate cribra and marginal spines. (d) Interior view of natural sample, a robust sternum, rimoportulae absent. (e) Exterior view in culture, showing corroded cribra and slit-like areolae in the apical pore field. (f) Interior view, rimoportulae absent. (g) Chain colony in girdle view and plain girdle bands.</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574428, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.g008", "stats"=>{"downloads"=>2, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Neofragilaria_stilus_LM_a_b_and_SEM_f_g_/1574428", "title"=>"<i>Neofragilaria stilus</i>, LM (a-b) and SEM (f-g).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358469"], "description"=>"<p>Cultured material SZCZM116. (a) Entire valve in valve view. (b) Detail of the apex. (c) Enlarged view of Fig 9a. (d) A closed girdle band.</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574430, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.g009", "stats"=>{"downloads"=>1, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Neofragilaria_stilus_TEM_/1574430", "title"=>"<i>Neofragilaria stilus</i>, TEM.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-10-14 03:03:41"}
  • {"files"=>["https://ndownloader.figshare.com/files/2358436"], "description"=>"<p>Taxa (<i>Neofragilaria stilus</i>, <i>Orizaformis holarctica</i> and <i>Psammoneis obaidii</i>) in bold are newly described species. Support values less than 50% were omitted. Two <i>Bolidomona spacifica</i> species were used as outgroups. Centric and raphid clades were collapsed.</p>", "links"=>[], "tags"=>["New Species Plagiogrammaceae", "phylogenie", "Phylogenetic analyses", "combination taxa", "marine littoral zone", "Dimeregramma", "Neofragilaria anomala", "future studies", "plagiogrammoid genus", "New Insights", "rna", "Psammoneis obaidii", "Psammogramma", "Multigene Phylogenies", "Neofragilaria lineata", "new genus", "Bohai Sea", "Glyphodesmi", "Morphological Characteristics", "Mozambique Channel", "Talaroneis biacutifrons", "Neofragilaria stilus", "genera", "Orizaformi", "Indian Ocean", "Red Sea"], "article_id"=>1574399, "categories"=>["Uncategorised"], "users"=>["Chun L. Li", "Matt P. Ashworth", "Andrzej Witkowski", "Przemysław Dąbek", "Linda K. Medlin", "Wiebe H. C. F. Kooistra", "Shinya Sato", "Izabela Zgłobicka", "Krzysztof J. Kurzydłowski", "Edward C. Theriot", "Jamal S. M. Sabir", "Mohammad A. Khiyami", "Mohammed H. Z. Mutwakil", "Meshaal J. Sabir", "Njud S. Alharbi", "Nahid H. Hajarah", "Song Qing", "Robert K. Jansen"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0139300.g001", "stats"=>{"downloads"=>4, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Maximum_likelihood_phylogeny_of_161_diatoms_with_bootstrap_values_at_nodes_was_inferred_from_a_concatenated_alignment_of_SSU_rRNA_rbc_L_and_psb_C_markers_/1574399", "title"=>"Maximum likelihood phylogeny of 161 diatoms (with bootstrap values at nodes) was inferred from a concatenated alignment of SSU rRNA, <i>rbc</i>L and <i>psb</i>C markers.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-10-14 03:03:41"}

PMC Usage Stats | Further Information

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  • {"unique-ip"=>"12", "full-text"=>"10", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"3"}
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  • {"unique-ip"=>"12", "full-text"=>"12", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"5"}

Relative Metric

{"start_date"=>"2015-01-01T00:00:00Z", "end_date"=>"2015-12-31T00:00:00Z", "subject_areas"=>[]}
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