Homogenous Population Genetic Structure of the Non-Native Raccoon Dog (Nyctereutes procyonoides) in Europe as a Result of Rapid Population Expansion
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{"title"=>"Homogenous population genetic structure of the non-native raccoon dog (Nyctereutes procyonoides) in Europe as a result of rapid population expansion", "type"=>"journal", "authors"=>[{"first_name"=>"Frank", "last_name"=>"Drygala", "scopus_author_id"=>"24278377200"}, {"first_name"=>"Nikolay", "last_name"=>"Korablev", "scopus_author_id"=>"37061006800"}, {"first_name"=>"Hermann", "last_name"=>"Ansorge", "scopus_author_id"=>"6603416758"}, {"first_name"=>"Joerns", "last_name"=>"Fickel", "scopus_author_id"=>"55407156600"}, {"first_name"=>"Marja", "last_name"=>"Isomursu", "scopus_author_id"=>"14422364800"}, {"first_name"=>"Morten", "last_name"=>"Elmeros", "scopus_author_id"=>"6507854254"}, {"first_name"=>"Rafał", "last_name"=>"Kowalczyk", "scopus_author_id"=>"7006215511"}, {"first_name"=>"Laima", "last_name"=>"Baltrunaite", "scopus_author_id"=>"35106827600"}, {"first_name"=>"Linas", "last_name"=>"Balciauskas", "scopus_author_id"=>"25029782700"}, {"first_name"=>"Urmas", "last_name"=>"Saarma", "scopus_author_id"=>"6508125252"}, {"first_name"=>"Christoph", "last_name"=>"Schulze", "scopus_author_id"=>"7101622108"}, {"first_name"=>"Peter", "last_name"=>"Borkenhagen", "scopus_author_id"=>"16493953800"}, {"first_name"=>"Alain C.", "last_name"=>"Frantz", "scopus_author_id"=>"7006656184"}], "year"=>2016, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"609727111", "issn"=>"19326203", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "doi"=>"10.1371/journal.pone.0153098", "scopus"=>"2-s2.0-84963759681", "pmid"=>"27064784", "sgr"=>"84963759681"}, "id"=>"1963f619-cbda-3fdf-b6a5-8875d2cb9d51", "abstract"=>"The extent of gene flow during the range expansion of non-native species influences the amount of genetic diversity retained in expanding populations. Here, we analyse the population genetic structure of the raccoon dog (Nyctereutes procyonoides) in north-eastern and central Europe. This invasive species is of management concern because it is highly susceptible to fox rabies and an important secondary host of the virus. We hypothesized that the large number of introduced animals and the species' dispersal capabilities led to high population connectivity and maintenance of genetic diversity throughout the invaded range. We genotyped 332 tissue samples from seven European countries using 16 microsatellite loci. Different algorithms identified three genetic clusters corresponding to Finland, Denmark and a large 'central' population that reached from introduction areas in western Russia to northern Germany. Cluster assignments provided evidence of long-distance dispersal. The results of an Approximate Bayesian Computation analysis supported a scenario of equal effective population sizes among different pre-defined populations in the large central cluster. Our results are in line with strong gene flow and secondary admixture between neighbouring demes leading to reduced genetic structuring, probably a result of its fairly rapid population expansion after introduction. The results presented here are remarkable in the sense that we identified a homogenous genetic cluster inhabiting an area stretching over more than 1500km. They are also relevant for disease management, as in the event of a significant rabies outbreak, there is a great risk of a rapid virus spread among raccoon dog populations.", "link"=>"http://www.mendeley.com/research/homogenous-population-genetic-structure-nonnative-raccoon-dog-nyctereutes-procyonoides-europe-result", "reader_count"=>25, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>2, "Student > Doctoral Student"=>3, "Researcher"=>5, "Student > Ph. D. Student"=>7, "Student > Master"=>1, "Other"=>2, "Student > Bachelor"=>4}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>2, "Student > Doctoral Student"=>3, "Researcher"=>5, "Student > Ph. D. Student"=>7, "Student > Master"=>1, "Other"=>2, "Student > Bachelor"=>4}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Environmental Science"=>4, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>14, "Medicine and Dentistry"=>1, "Earth and Planetary Sciences"=>1, "Economics, Econometrics and Finance"=>2}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>1}, "Economics, Econometrics and Finance"=>{"Economics, Econometrics and Finance"=>2}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>14}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>2}, "Environmental Science"=>{"Environmental Science"=>4}}, "reader_count_by_country"=>{"Australia"=>1}, "group_count"=>1}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/4935721"], "description"=>"<p>Left: graph of linear regressions showing posterior probabilities of the scenarios on the Y axis and the number of simulations used to calculate it (1% of total simulations) on the X axis. Right: The plot for the best-supported scenario.</p>", "links"=>[], "tags"=>["raccoon dog populations", "genotyped 332 tissue samples", "Nyctereutes procyonoides", "Approximate Bayesian Computation analysis", "gene flow", "Homogenous Population Genetic Structure", "16 microsatellite loci", "Rapid Population Expansion", "cluster", "species"], "article_id"=>3170416, "categories"=>["Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified"], "users"=>["Frank Drygala", "Nikolay Korablev", "Hermann Ansorge", "Joerns Fickel", "Marja Isomursu", "Morten Elmeros", "Rafał Kowalczyk", "Laima Baltrunaite", "Linas Balciauskas", "Urmas Saarma", "Christoph Schulze", "Peter Borkenhagen", "Alain C. Frantz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0153098.g005", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Results_from_the_ABC_analysis_/3170416", "title"=>"Results from the ABC analysis.", "pos_in_sequence"=>6, "defined_type"=>1, "published_date"=>"2016-04-11 07:49:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/4935658"], "description"=>"<p>The analysis was based on 15 microsatellite loci. The percentage of the total variation explained by each of the two axes is given.</p>", "links"=>[], "tags"=>["raccoon dog populations", "genotyped 332 tissue samples", "Nyctereutes procyonoides", "Approximate Bayesian Computation analysis", "gene flow", "Homogenous Population Genetic Structure", "16 microsatellite loci", "Rapid Population Expansion", "cluster", "species"], "article_id"=>3170353, "categories"=>["Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified"], "users"=>["Frank Drygala", "Nikolay Korablev", "Hermann Ansorge", "Joerns Fickel", "Marja Isomursu", "Morten Elmeros", "Rafał Kowalczyk", "Laima Baltrunaite", "Linas Balciauskas", "Urmas Saarma", "Christoph Schulze", "Peter Borkenhagen", "Alain C. Frantz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0153098.g003", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Factorial_correspondence_analysis_of_raccoon_dogs_from_the_10_pre_defined_European_populations_/3170353", "title"=>"Factorial correspondence analysis of raccoon dogs from the 10 pre-defined European populations.", "pos_in_sequence"=>4, "defined_type"=>1, "published_date"=>"2016-04-11 07:49:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/4935583"], "description"=>"<p>The size of a circle is representative of the number of samples collected from that locality.</p>", "links"=>[], "tags"=>["raccoon dog populations", "genotyped 332 tissue samples", "Nyctereutes procyonoides", "Approximate Bayesian Computation analysis", "gene flow", "Homogenous Population Genetic Structure", "16 microsatellite loci", "Rapid Population Expansion", "cluster", "species"], "article_id"=>3170275, "categories"=>["Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified"], "users"=>["Frank Drygala", "Nikolay Korablev", "Hermann Ansorge", "Joerns Fickel", "Marja Isomursu", "Morten Elmeros", "Rafał Kowalczyk", "Laima Baltrunaite", "Linas Balciauskas", "Urmas Saarma", "Christoph Schulze", "Peter Borkenhagen", "Alain C. Frantz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0153098.g001", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Sample_distribution_and_location_of_the_pre_defined_study_populations_/3170275", "title"=>"Sample distribution and location of the pre-defined study populations.", "pos_in_sequence"=>2, "defined_type"=>1, "published_date"=>"2016-04-11 07:49:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/4935628"], "description"=>"<p>Different colours represent the model assignment of individuals to the different clusters. The size of the symbol is representative of the number of individuals sampled at that location (see also <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0153098#pone.0153098.g001\" target=\"_blank\">Fig 1</a>). Inset: Summary of the assignment results obtained with STRUCTURE (<i>K</i> = 2 to 4) and BAPS (<i>K</i> = 3). Each individual is represented by a single vertical line, representing the individual`s estimated proportion of membership to the genetic cluster. Colours correspond to the clusters in the main figure. The order of the individuals was the same in both assignments. The STRUCTURE <i>K</i> = 4 bar chart represents results from the nine (out of ten) independent runs that converged on the same clustering solution.</p>", "links"=>[], "tags"=>["raccoon dog populations", "genotyped 332 tissue samples", "Nyctereutes procyonoides", "Approximate Bayesian Computation analysis", "gene flow", "Homogenous Population Genetic Structure", "16 microsatellite loci", "Rapid Population Expansion", "cluster", "species"], "article_id"=>3170326, "categories"=>["Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified"], "users"=>["Frank Drygala", "Nikolay Korablev", "Hermann Ansorge", "Joerns Fickel", "Marja Isomursu", "Morten Elmeros", "Rafał Kowalczyk", "Laima Baltrunaite", "Linas Balciauskas", "Urmas Saarma", "Christoph Schulze", "Peter Borkenhagen", "Alain C. Frantz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0153098.g002", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Geographic_distribution_of_the_BAPS_derived_clusters_i_K_i_3_obtained_using_the_spatial_model_/3170326", "title"=>"Geographic distribution of the BAPS derived clusters (<i>K</i> = 3), obtained using the spatial model.", "pos_in_sequence"=>3, "defined_type"=>1, "published_date"=>"2016-04-11 07:49:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/4935697"], "description"=>"<p>Genetic differentiation is given as <i>F</i><sub>ST</sub>/(1-<i>F</i><sub>ST</sub>), whereas the geographic distance was log-transformed. Geographic distances are given as effective geographic distances that only consider the shortest overland route between sampling points.</p>", "links"=>[], "tags"=>["raccoon dog populations", "genotyped 332 tissue samples", "Nyctereutes procyonoides", "Approximate Bayesian Computation analysis", "gene flow", "Homogenous Population Genetic Structure", "16 microsatellite loci", "Rapid Population Expansion", "cluster", "species"], "article_id"=>3170392, "categories"=>["Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified"], "users"=>["Frank Drygala", "Nikolay Korablev", "Hermann Ansorge", "Joerns Fickel", "Marja Isomursu", "Morten Elmeros", "Rafał Kowalczyk", "Laima Baltrunaite", "Linas Balciauskas", "Urmas Saarma", "Christoph Schulze", "Peter Borkenhagen", "Alain C. Frantz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0153098.g004", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Genetic_and_geographic_distance_for_pairs_of_sampled_pre_defined_populations_/3170392", "title"=>"Genetic and geographic distance for pairs of sampled pre-defined populations.", "pos_in_sequence"=>5, "defined_type"=>1, "published_date"=>"2016-04-11 07:49:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/4935448", "https://ndownloader.figshare.com/files/4935454", "https://ndownloader.figshare.com/files/4935493", "https://ndownloader.figshare.com/files/4935508", "https://ndownloader.figshare.com/files/4935511", "https://ndownloader.figshare.com/files/4935517"], "description"=>"<div><p>The extent of gene flow during the range expansion of non-native species influences the amount of genetic diversity retained in expanding populations. Here, we analyse the population genetic structure of the raccoon dog (<i>Nyctereutes procyonoides</i>) in north-eastern and central Europe. This invasive species is of management concern because it is highly susceptible to fox rabies and an important secondary host of the virus. We hypothesized that the large number of introduced animals and the species’ dispersal capabilities led to high population connectivity and maintenance of genetic diversity throughout the invaded range. We genotyped 332 tissue samples from seven European countries using 16 microsatellite loci. Different algorithms identified three genetic clusters corresponding to Finland, Denmark and a large ‘central’ population that reached from introduction areas in western Russia to northern Germany. Cluster assignments provided evidence of long-distance dispersal. The results of an Approximate Bayesian Computation analysis supported a scenario of equal effective population sizes among different pre-defined populations in the large central cluster. Our results are in line with strong gene flow and secondary admixture between neighbouring demes leading to reduced genetic structuring, probably a result of its fairly rapid population expansion after introduction. The results presented here are remarkable in the sense that we identified a homogenous genetic cluster inhabiting an area stretching over more than 1500km. They are also relevant for disease management, as in the event of a significant rabies outbreak, there is a great risk of a rapid virus spread among raccoon dog populations.</p></div>", "links"=>[], "tags"=>["raccoon dog populations", "genotyped 332 tissue samples", "Nyctereutes procyonoides", "Approximate Bayesian Computation analysis", "gene flow", "Homogenous Population Genetic Structure", "16 microsatellite loci", "Rapid Population Expansion", "cluster", "species"], "article_id"=>3170185, "categories"=>["Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified"], "users"=>["Frank Drygala", "Nikolay Korablev", "Hermann Ansorge", "Joerns Fickel", "Marja Isomursu", "Morten Elmeros", "Rafał Kowalczyk", "Laima Baltrunaite", "Linas Balciauskas", "Urmas Saarma", "Christoph Schulze", "Peter Borkenhagen", "Alain C. Frantz"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0153098.s001", "https://dx.doi.org/10.1371/journal.pone.0153098.s002", "https://dx.doi.org/10.1371/journal.pone.0153098.s003", "https://dx.doi.org/10.1371/journal.pone.0153098.s004", "https://dx.doi.org/10.1371/journal.pone.0153098.s005", "https://dx.doi.org/10.1371/journal.pone.0153098.s006"], "stats"=>{"downloads"=>0, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Homogenous_Population_Genetic_Structure_of_the_Non_Native_Raccoon_Dog_i_Nyctereutes_procyonoides_i_in_Europe_as_a_Result_of_Rapid_Population_Expansion/3170185", "title"=>"Homogenous Population Genetic Structure of the Non-Native Raccoon Dog (<i>Nyctereutes procyonoides</i>) in Europe as a Result of Rapid Population Expansion", "pos_in_sequence"=>1, "defined_type"=>4, "published_date"=>"2016-04-11 07:49:07"}
  • {"files"=>["https://ndownloader.figshare.com/files/4935748"], "description"=>"<p>Genetic characteristics of the three inferred genetic clusters.</p>", "links"=>[], "tags"=>["raccoon dog populations", "genotyped 332 tissue samples", "Nyctereutes procyonoides", "Approximate Bayesian Computation analysis", "gene flow", "Homogenous Population Genetic Structure", "16 microsatellite loci", "Rapid Population Expansion", "cluster", "species"], "article_id"=>3170443, "categories"=>["Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified"], "users"=>["Frank Drygala", "Nikolay Korablev", "Hermann Ansorge", "Joerns Fickel", "Marja Isomursu", "Morten Elmeros", "Rafał Kowalczyk", "Laima Baltrunaite", "Linas Balciauskas", "Urmas Saarma", "Christoph Schulze", "Peter Borkenhagen", "Alain C. Frantz"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0153098.t001", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Genetic_characteristics_of_the_three_inferred_genetic_clusters_/3170443", "title"=>"Genetic characteristics of the three inferred genetic clusters.", "pos_in_sequence"=>7, "defined_type"=>3, "published_date"=>"2016-04-11 07:49:07"}

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{"start_date"=>"2016-01-01T00:00:00Z", "end_date"=>"2016-12-31T00:00:00Z", "subject_areas"=>[]}
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