Nested Association Mapping of Stem Rust Resistance in Wheat Using Genotyping by Sequencing
Publication Date
May 17, 2016
Journal
PLOS ONE
Authors
Prabin Bajgain, Matthew N. Rouse, Toi J. Tsilo, Godwin K. Macharia, et al
Volume
11
Issue
5
Pages
e0155760
DOI
https://dx.plos.org/10.1371/journal.pone.0155760
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0155760
Scopus
84969625483
Mendeley
http://www.mendeley.com/research/nested-association-mapping-stem-rust-resistance-wheat-using-genotyping-sequencing-2
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Mendeley | Further Information

{"title"=>"Nested association mapping of stem rust resistance in wheat using genotyping by sequencing", "type"=>"journal", "authors"=>[{"first_name"=>"Prabin", "last_name"=>"Bajgain", "scopus_author_id"=>"43561006400"}, {"first_name"=>"Matthew N.", "last_name"=>"Rouse", "scopus_author_id"=>"15729602800"}, {"first_name"=>"Toi J.", "last_name"=>"Tsilo", "scopus_author_id"=>"22836668600"}, {"first_name"=>"Godwin K.", "last_name"=>"Macharia", "scopus_author_id"=>"56037700800"}, {"first_name"=>"Sridhar", "last_name"=>"Bhavani", "scopus_author_id"=>"8883293000"}, {"first_name"=>"Yue", "last_name"=>"Jin", "scopus_author_id"=>"7404458506"}, {"first_name"=>"James A.", "last_name"=>"Anderson", "scopus_author_id"=>"7407511957"}], "year"=>2016, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"610398171", "sgr"=>"84969625483", "issn"=>"19326203", "arxiv"=>"ISSN: 2278-8867", "pmid"=>"27186883", "scopus"=>"2-s2.0-84969625483", "doi"=>"10.1371/journal.pone.0155760", "isbn"=>"1467-7644"}, "id"=>"2c90616a-b123-3f65-b713-0f14e515b0de", "abstract"=>"<p>We combined the recently developed genotyping by sequencing (GBS) method with joint mapping (also known as nested association mapping) to dissect and understand the genetic architecture controlling stem rust resistance in wheat (<italic>Triticum aestivum</italic>). Ten stem rust resistant wheat varieties were crossed to the susceptible line LMPG-6 to generate F<sub>6</sub> recombinant inbred lines. The recombinant inbred line populations were phenotyped in Kenya, South Africa, and St. Paul, Minnesota, USA. By joint mapping of the 10 populations, we identified 59 minor and medium-effect QTL (explained phenotypic variance range of 1% ? 20%) on 20 chromosomes that contributed towards adult plant resistance to North American <italic>Pgt</italic> races as well as the highly virulent Ug99 race group. Fifteen of the 59 QTL were detected in multiple environments. No epistatic relationship was detected among the QTL. While these numerous small- to medium-effect QTL are shared among the families, the founder parents were found to have different allelic effects for the QTL. Fourteen QTL identified by joint mapping were also detected in single-population mapping. As these QTL were mapped using SNP markers with known locations on the physical chromosomes, the genomic regions identified with QTL could be explored more in depth to discover candidate genes for stem rust resistance. The use of GBS-derived <italic>de novo</italic> SNPs in mapping resistance to stem rust shown in this study could be used as a model to conduct similar marker-trait association studies in other plant species.</p>", "link"=>"http://www.mendeley.com/research/nested-association-mapping-stem-rust-resistance-wheat-using-genotyping-sequencing-2", "reader_count"=>50, "reader_count_by_academic_status"=>{"Unspecified"=>4, "Researcher"=>9, "Student > Ph. D. Student"=>20, "Student > Postgraduate"=>3, "Student > Master"=>7, "Other"=>3, "Student > Bachelor"=>2, "Professor"=>2}, "reader_count_by_user_role"=>{"Unspecified"=>4, "Researcher"=>9, "Student > Ph. D. Student"=>20, "Student > Postgraduate"=>3, "Student > Master"=>7, "Other"=>3, "Student > Bachelor"=>2, "Professor"=>2}, "reader_count_by_subject_area"=>{"Unspecified"=>4, "Biochemistry, Genetics and Molecular Biology"=>4, "Agricultural and Biological Sciences"=>38, "Business, Management and Accounting"=>1, "Computer Science"=>2, "Earth and Planetary Sciences"=>1}, "reader_count_by_subdiscipline"=>{"Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>38}, "Computer Science"=>{"Computer Science"=>2}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>4}, "Unspecified"=>{"Unspecified"=>4}}, "reader_count_by_country"=>{"Austria"=>1, "Uruguay"=>1, "United States"=>1, "Italy"=>1}, "group_count"=>2}

Scopus | Further Information

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