Gene Expression Deconvolution for Uncovering Molecular Signatures in Response to Therapy in Juvenile Idiopathic Arthritis
Publication Date
May 31, 2016
Journal
PLOS ONE
Authors
Ang Cui, Gerald Quon, Alan M. Rosenberg, Rae S. M. Yeung, et al
Volume
11
Issue
5
Pages
e0156055
DOI
https://dx.plos.org/10.1371/journal.pone.0156055
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0156055
Scopus
84971636107
Mendeley
http://www.mendeley.com/research/gene-expression-deconvolution-uncovering-molecular-signatures-response-therapy-juvenile-idiopathic-a-6
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Mendeley | Further Information

{"title"=>"Gene expression deconvolution for uncovering molecular signatures in response to therapy in juvenile idiopathic arthritis", "type"=>"journal", "authors"=>[{"first_name"=>"Ang", "last_name"=>"Cui", "scopus_author_id"=>"55629742700"}, {"first_name"=>"Gerald", "last_name"=>"Quon", "scopus_author_id"=>"6507836772"}, {"first_name"=>"Alan M.", "last_name"=>"Rosenberg", "scopus_author_id"=>"7402585729"}, {"first_name"=>"Rae S.M.", "last_name"=>"Yeung", "scopus_author_id"=>"8880882900"}, {"first_name"=>"Quaid", "last_name"=>"Morris", "scopus_author_id"=>"6602924726"}, {"first_name"=>"Paul", "last_name"=>"Dancey", "scopus_author_id"=>"15126514500"}, {"first_name"=>"Adam", "last_name"=>"Huber", "scopus_author_id"=>"7201393750"}, {"first_name"=>"Bianca", "last_name"=>"Lang", "scopus_author_id"=>"7201907152"}, {"first_name"=>"Suzanne", "last_name"=>"Ramsey", "scopus_author_id"=>"7102300391"}, {"first_name"=>"Elizabeth", "last_name"=>"Stringer", "scopus_author_id"=>"7003315822"}, {"first_name"=>"Anne Laure", "last_name"=>"Chetaille", "scopus_author_id"=>"30467561000"}, {"first_name"=>"Gilles", "last_name"=>"Boire", "scopus_author_id"=>"7004465892"}, {"first_name"=>"Sarah", "last_name"=>"Campillo", "scopus_author_id"=>"26029069500"}, {"first_name"=>"Ga�lle", "last_name"=>"Ch�deville", "scopus_author_id"=>"57201178907"}, {"first_name"=>"Rosie", "last_name"=>"Scuccimarri", "scopus_author_id"=>"6507589446"}, {"first_name"=>"Ciar�n", "last_name"=>"Duffy", "scopus_author_id"=>"57201169800"}, {"first_name"=>"Karen Watanabe", "last_name"=>"Duffy", "scopus_author_id"=>"7006592217"}, {"first_name"=>"Michele", "last_name"=>"Gibbon", "scopus_author_id"=>"7003937254"}, {"first_name"=>"Roman", "last_name"=>"Jurencak", "scopus_author_id"=>"26435263200"}, {"first_name"=>"Johannes", "last_name"=>"Roth", "scopus_author_id"=>"7404379084"}, {"first_name"=>"Susanne", "last_name"=>"Benseler", "scopus_author_id"=>"8580316100"}, {"first_name"=>"Bonnie", "last_name"=>"Cameron", "scopus_author_id"=>"7103128654"}, {"first_name"=>"Brian", "last_name"=>"Feldman", "scopus_author_id"=>"7102905951"}, {"first_name"=>"Ronald", "last_name"=>"Laxer", "scopus_author_id"=>"7005728630"}, {"first_name"=>"Rayfel", "last_name"=>"Schneider", "scopus_author_id"=>"7403513348"}, {"first_name"=>"Lynn", "last_name"=>"Spiegel", "scopus_author_id"=>"8218552000"}, {"first_name"=>"Shirley", "last_name"=>"Tse", "scopus_author_id"=>"7006643126"}, {"first_name"=>"Kiem", "last_name"=>"Oen", "scopus_author_id"=>"7004835654"}, {"first_name"=>"Elham", "last_name"=>"Rezaei", "scopus_author_id"=>"57189514446"}, {"first_name"=>"Loren", "last_name"=>"Matheson", "scopus_author_id"=>"7004492363"}, {"first_name"=>"Janet", "last_name"=>"Ellsworth", "scopus_author_id"=>"7005510338"}, {"first_name"=>"David A.", "last_name"=>"Cabral", "scopus_author_id"=>"7004269133"}, {"first_name"=>"Jaime", "last_name"=>"Guzman", "scopus_author_id"=>"23476859200"}, {"first_name"=>"Kristin", "last_name"=>"Houghton", "scopus_author_id"=>"9237981500"}, {"first_name"=>"Ross", "last_name"=>"Petty", "scopus_author_id"=>"7103153657"}, {"first_name"=>"Lori B.", "last_name"=>"Tucker", "scopus_author_id"=>"7102203764"}, {"first_name"=>"Stuart", "last_name"=>"Turvey", "scopus_author_id"=>"12778474700"}], "year"=>2016, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"610575904", "pmid"=>"27244050", "doi"=>"10.1371/journal.pone.0156055", "issn"=>"19326203", "scopus"=>"2-s2.0-84971636107", "sgr"=>"84971636107", "isbn"=>"1932-6203"}, "id"=>"132e8a2a-ff2b-3f53-8405-c22807dfcff1", "abstract"=>"Gene expression-based signatures help identify pathways relevant to diseases and treatments, but are challenging to construct when there is a diversity of disease mechanisms and treatments in patients with complex diseases. To overcome this challenge, we present a new application of an in silico gene expression deconvolution method, ISOpure-S1, and apply it to identify a common gene expression signature corresponding to response to treatment in 33 juvenile idiopathic arthritis (JIA) patients. Using pre- and post-treatment gene expression profiles only, we found a gene expression signature that significantly correlated with a reduction in the number of joints with active arthritis, a measure of clinical outcome (Spearman rho = 0.44, p = 0.040, Bonferroni correction). This signature may be associated with a decrease in T-cells, monocytes, neutrophils and platelets. The products of most differentially expressed genes include known biomarkers for JIA such as major histocompatibility complexes and interleukins, as well as novel biomarkers including α-defensins. This method is readily applicable to expression datasets of other complex diseases to uncover shared mechanistic patterns in heterogeneous samples.", "link"=>"http://www.mendeley.com/research/gene-expression-deconvolution-uncovering-molecular-signatures-response-therapy-juvenile-idiopathic-a-6", "reader_count"=>4, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>1, "Researcher"=>2}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>1, "Researcher"=>2}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Medicine and Dentistry"=>2, "Immunology and Microbiology"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>2}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Unspecified"=>{"Unspecified"=>1}}, "group_count"=>0}

Scopus | Further Information

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