SNP-SNP Interaction Analysis on Soybean Oil Content under Multi-Environments
Publication Date
September 26, 2016
Journal
PLOS ONE
Authors
Qingshan Chen, Xinrui Mao, Zhanguo Zhang, Rongsheng Zhu, et al
Volume
11
Issue
9
Pages
e0163692
DOI
https://dx.plos.org/10.1371/journal.pone.0163692
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0163692
Scopus
84992323027
Mendeley
http://www.mendeley.com/research/snpsnp-interaction-analysis-soybean-oil-content-under-multienvironments-1
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Mendeley | Further Information

{"title"=>"SNP-SNP interaction analysis on soybean oil content under multi-environments", "type"=>"journal", "authors"=>[{"first_name"=>"Qingshan", "last_name"=>"Chen", "scopus_author_id"=>"56083874900"}, {"first_name"=>"Xinrui", "last_name"=>"Mao", "scopus_author_id"=>"57188974575"}, {"first_name"=>"Zhanguo", "last_name"=>"Zhang", "scopus_author_id"=>"57191663400"}, {"first_name"=>"Rongsheng", "last_name"=>"Zhu", "scopus_author_id"=>"55438071300"}, {"first_name"=>"Zhengong", "last_name"=>"Yin", "scopus_author_id"=>"57191669152"}, {"first_name"=>"Yue", "last_name"=>"Leng", "scopus_author_id"=>"56494156800"}, {"first_name"=>"Hongxiao", "last_name"=>"Yu", "scopus_author_id"=>"57191646903"}, {"first_name"=>"Huiying", "last_name"=>"Jia", "scopus_author_id"=>"57191646006"}, {"first_name"=>"Shanshan", "last_name"=>"Jiang", "scopus_author_id"=>"57191658611"}, {"first_name"=>"Zhongqiu", "last_name"=>"Ni", "scopus_author_id"=>"57191664323"}, {"first_name"=>"Hongwei", "last_name"=>"Jiang", "scopus_author_id"=>"55017677900"}, {"first_name"=>"Xue", "last_name"=>"Han", "scopus_author_id"=>"55450986100"}, {"first_name"=>"Chunyan", "last_name"=>"Liu", "scopus_author_id"=>"57200871827"}, {"first_name"=>"Zhenbang", "last_name"=>"Hu", "scopus_author_id"=>"56083204800"}, {"first_name"=>"Xiaoxia", "last_name"=>"Wu", "scopus_author_id"=>"55715110900"}, {"first_name"=>"Guohua", "last_name"=>"Hu", "scopus_author_id"=>"55513962100"}, {"first_name"=>"Dawei", "last_name"=>"Xin", "scopus_author_id"=>"16240369100"}, {"first_name"=>"Zhaoming", "last_name"=>"Qi", "scopus_author_id"=>"35801449800"}], "year"=>2016, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"612857021", "pmid"=>"27668866", "doi"=>"10.1371/journal.pone.0163692", "issn"=>"19326203", "scopus"=>"2-s2.0-84992323027", "sgr"=>"84992323027"}, "id"=>"dbaedb45-f2fa-362e-a76f-8deb1a414b42", "abstract"=>"Soybean oil content is one of main quality traits. In this study, we used the multifactor dimensionality reduction (MDR) method and a soybean high-density genetic map including 5,308 markers to identify stable single nucleotide polymorphism (SNP)-SNP interactions controlling oil content in soybean across 23 environments. In total, 36,442,756 SNP-SNP interaction pairs were detected, 1865 of all interaction pairs associated with soybean oil content were identified under multiple environments by the Bonferroni correction with p <3.55x10-11. Two and 1863 SNP-SNP interaction pairs detected stable across 12 and 11 environments, respectively, which account around 50% of total environments. Epistasis values and contribution rates of stable interaction (the SNP interaction pairs were detected in more than 2 environments) pairs were detected by the two way ANOVA test, the available interaction pairs were ranged 0.01 to 0.89 and from 0.01 to 0.85, respectively. Some of one side of the interaction pairs were identified with previously research as a major QTL without epistasis effects. The results of this study provide insights into the genetic architecture of soybean oil content and can serve as a basis for marker-assisted selection breeding.", "link"=>"http://www.mendeley.com/research/snpsnp-interaction-analysis-soybean-oil-content-under-multienvironments-1", "reader_count"=>8, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Researcher"=>1, "Student > Ph. D. Student"=>3, "Student > Master"=>2, "Lecturer"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Researcher"=>1, "Student > Ph. D. Student"=>3, "Student > Master"=>2, "Lecturer"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>1, "Medicine and Dentistry"=>1, "Agricultural and Biological Sciences"=>4}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>4}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>1}}, "reader_count_by_country"=>{"United States"=>1}, "group_count"=>0}

Scopus | Further Information

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