BEST: Next-Generation Biomedical Entity Search Tool for Knowledge Discovery from Biomedical Literature
Publication Date
October 19, 2016
Journal
PLOS ONE
Authors
Sunwon Lee, Donghyeon Kim, Kyubum Lee, Jaehoon Choi, et al
Volume
11
Issue
10
Pages
e0164680
DOI
https://dx.plos.org/10.1371/journal.pone.0164680
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0164680
Web of Science
000386204000044
Scopus
84992163318
Mendeley
http://www.mendeley.com/research/best-nextgeneration-biomedical-entity-search-tool-knowledge-discovery-biomedical-literature
Events
Loading … Spinner

Mendeley | Further Information

{"title"=>"BEST: Next-generation biomedical entity search tool for knowledge discovery from biomedical literature", "type"=>"journal", "authors"=>[{"first_name"=>"Sunwon", "last_name"=>"Lee", "scopus_author_id"=>"37108227300"}, {"first_name"=>"Donghyeon", "last_name"=>"Kim", "scopus_author_id"=>"56109754000"}, {"first_name"=>"Kyubum", "last_name"=>"Lee", "scopus_author_id"=>"54585506800"}, {"first_name"=>"Jaehoon", "last_name"=>"Choi", "scopus_author_id"=>"56126642100"}, {"first_name"=>"Seongsoon", "last_name"=>"Kim", "scopus_author_id"=>"54585556100"}, {"first_name"=>"Minji", "last_name"=>"Jeon", "scopus_author_id"=>"55561994100"}, {"first_name"=>"Sangrak", "last_name"=>"Lim", "scopus_author_id"=>"55218585800"}, {"first_name"=>"Donghee", "last_name"=>"Choi", "scopus_author_id"=>"57189294152"}, {"first_name"=>"Sunkyu", "last_name"=>"Kim", "scopus_author_id"=>"57189041063"}, {"first_name"=>"Aik Choon", "last_name"=>"Tan", "scopus_author_id"=>"8949996200"}, {"first_name"=>"Jaewoo", "last_name"=>"Kang", "scopus_author_id"=>"8914056400"}], "year"=>2016, "source"=>"PLoS ONE", "identifiers"=>{"pmid"=>"27760149", "doi"=>"10.1371/journal.pone.0164680", "issn"=>"19326203", "pui"=>"612830810", "isbn"=>"19326203 (Electronic)", "sgr"=>"84992163318", "scopus"=>"2-s2.0-84992163318"}, "id"=>"c88ca9ae-1b74-390d-8905-3cc7829dee50", "abstract"=>"As the volume of publications rapidly increases, searching for relevant information from the literature becomes more challenging. To complement standard search engines such as PubMed, it is desirable to have an advanced search tool that directly returns relevant biomedical entities such as targets, drugs, and mutations rather than a long list of articles. Some existing tools submit a query to PubMed and process retrieved abstracts to extract information at query time, resulting in a slow response time and limited coverage of only a fraction of the PubMed corpus. Other tools preprocess the PubMed corpus to speed up the response time; however, they are not constantly updated, and thus produce outdated results. Further, most existing tools cannot process sophisticated queries such as searches for mutations that co-occur with query terms in the literature. To address these problems, we introduce BEST, a biomedical entity search tool. BEST returns, as a result, a list of 10 different types of biomedical entities including genes, diseases, drugs, targets, transcription factors, miRNAs, and mutations that are relevant to a user's query. To the best of our knowledge, BEST is the only system that processes free text queries and returns up-to-date results in real time including mutation information in the results. BEST is freely accessible at http://best.korea.ac.kr.", "link"=>"http://www.mendeley.com/research/best-nextgeneration-biomedical-entity-search-tool-knowledge-discovery-biomedical-literature", "reader_count"=>18, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Professor > Associate Professor"=>3, "Researcher"=>4, "Student > Ph. D. Student"=>6, "Student > Postgraduate"=>1, "Student > Master"=>2}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Professor > Associate Professor"=>3, "Researcher"=>4, "Student > Ph. D. Student"=>6, "Student > Postgraduate"=>1, "Student > Master"=>2}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Engineering"=>2, "Biochemistry, Genetics and Molecular Biology"=>4, "Mathematics"=>1, "Agricultural and Biological Sciences"=>2, "Neuroscience"=>1, "Computer Science"=>6}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>2}, "Neuroscience"=>{"Neuroscience"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>2}, "Computer Science"=>{"Computer Science"=>6}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>4}, "Mathematics"=>{"Mathematics"=>1}, "Unspecified"=>{"Unspecified"=>2}}, "reader_count_by_country"=>{"Korea (South)"=>1, "China"=>1}, "group_count"=>0}

Scopus | Further Information

{"@_fa"=>"true", "link"=>[{"@_fa"=>"true", "@ref"=>"self", "@href"=>"https://api.elsevier.com/content/abstract/scopus_id/84992163318"}, {"@_fa"=>"true", "@ref"=>"author-affiliation", "@href"=>"https://api.elsevier.com/content/abstract/scopus_id/84992163318?field=author,affiliation"}, {"@_fa"=>"true", "@ref"=>"scopus", "@href"=>"https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84992163318&origin=inward"}, {"@_fa"=>"true", "@ref"=>"scopus-citedby", "@href"=>"https://www.scopus.com/inward/citedby.uri?partnerID=HzOxMe3b&scp=84992163318&origin=inward"}], "prism:url"=>"https://api.elsevier.com/content/abstract/scopus_id/84992163318", "dc:identifier"=>"SCOPUS_ID:84992163318", "eid"=>"2-s2.0-84992163318", "dc:title"=>"BEST: Next-generation biomedical entity search tool for knowledge discovery from biomedical literature", "dc:creator"=>"Lee S.", "prism:publicationName"=>"PLoS ONE", "prism:eIssn"=>"19326203", "prism:volume"=>"11", "prism:issueIdentifier"=>"10", "prism:pageRange"=>nil, "prism:coverDate"=>"2016-10-01", "prism:coverDisplayDate"=>"October 2016", "prism:doi"=>"10.1371/journal.pone.0164680", "citedby-count"=>"17", "affiliation"=>[{"@_fa"=>"true", "affilname"=>"Korea University", "affiliation-city"=>"Seoul", "affiliation-country"=>"South Korea"}], "pubmed-id"=>"27760149", "prism:aggregationType"=>"Journal", "subtype"=>"ar", "subtypeDescription"=>"Article", "article-number"=>"e0164680", "source-id"=>"10600153309", "openaccess"=>"1", "openaccessFlag"=>true}

Counter

  • {"month"=>"10", "year"=>"2016", "pdf_views"=>"31", "xml_views"=>"0", "html_views"=>"179"}
  • {"month"=>"11", "year"=>"2016", "pdf_views"=>"13", "xml_views"=>"0", "html_views"=>"109"}
  • {"month"=>"12", "year"=>"2016", "pdf_views"=>"27", "xml_views"=>"1", "html_views"=>"75"}
  • {"month"=>"1", "year"=>"2017", "pdf_views"=>"20", "xml_views"=>"0", "html_views"=>"63"}
  • {"month"=>"2", "year"=>"2017", "pdf_views"=>"14", "xml_views"=>"0", "html_views"=>"67"}
  • {"month"=>"3", "year"=>"2017", "pdf_views"=>"26", "xml_views"=>"1", "html_views"=>"83"}
  • {"month"=>"4", "year"=>"2017", "pdf_views"=>"21", "xml_views"=>"0", "html_views"=>"66"}
  • {"month"=>"5", "year"=>"2017", "pdf_views"=>"20", "xml_views"=>"0", "html_views"=>"82"}
  • {"month"=>"6", "year"=>"2017", "pdf_views"=>"13", "xml_views"=>"4", "html_views"=>"61"}
  • {"month"=>"7", "year"=>"2017", "pdf_views"=>"34", "xml_views"=>"9", "html_views"=>"77"}
  • {"month"=>"8", "year"=>"2017", "pdf_views"=>"29", "xml_views"=>"3", "html_views"=>"73"}
  • {"month"=>"9", "year"=>"2017", "pdf_views"=>"21", "xml_views"=>"2", "html_views"=>"65"}
  • {"month"=>"10", "year"=>"2017", "pdf_views"=>"5", "xml_views"=>"0", "html_views"=>"47"}
  • {"month"=>"11", "year"=>"2017", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"153"}
  • {"month"=>"12", "year"=>"2017", "pdf_views"=>"8", "xml_views"=>"1", "html_views"=>"291"}
  • {"month"=>"1", "year"=>"2018", "pdf_views"=>"16", "xml_views"=>"1", "html_views"=>"68"}
  • {"month"=>"2", "year"=>"2018", "pdf_views"=>"25", "xml_views"=>"0", "html_views"=>"76"}
  • {"month"=>"3", "year"=>"2018", "pdf_views"=>"30", "xml_views"=>"0", "html_views"=>"110"}
  • {"month"=>"4", "year"=>"2018", "pdf_views"=>"42", "xml_views"=>"0", "html_views"=>"94"}
  • {"month"=>"5", "year"=>"2018", "pdf_views"=>"30", "xml_views"=>"1", "html_views"=>"82"}
  • {"month"=>"6", "year"=>"2018", "pdf_views"=>"31", "xml_views"=>"2", "html_views"=>"69"}
  • {"month"=>"7", "year"=>"2018", "pdf_views"=>"23", "xml_views"=>"3", "html_views"=>"54"}
  • {"month"=>"8", "year"=>"2018", "pdf_views"=>"18", "xml_views"=>"1", "html_views"=>"55"}
  • {"month"=>"9", "year"=>"2018", "pdf_views"=>"36", "xml_views"=>"2", "html_views"=>"43"}
  • {"month"=>"10", "year"=>"2018", "pdf_views"=>"13", "xml_views"=>"1", "html_views"=>"25"}
  • {"month"=>"11", "year"=>"2018", "pdf_views"=>"14", "xml_views"=>"1", "html_views"=>"55"}
  • {"month"=>"12", "year"=>"2018", "pdf_views"=>"9", "xml_views"=>"0", "html_views"=>"44"}
  • {"month"=>"1", "year"=>"2019", "pdf_views"=>"17", "xml_views"=>"1", "html_views"=>"39"}
  • {"month"=>"2", "year"=>"2019", "pdf_views"=>"15", "xml_views"=>"0", "html_views"=>"40"}
  • {"month"=>"3", "year"=>"2019", "pdf_views"=>"24", "xml_views"=>"0", "html_views"=>"47"}
  • {"month"=>"4", "year"=>"2019", "pdf_views"=>"22", "xml_views"=>"1", "html_views"=>"58"}
  • {"month"=>"5", "year"=>"2019", "pdf_views"=>"28", "xml_views"=>"2", "html_views"=>"55"}
  • {"month"=>"6", "year"=>"2019", "pdf_views"=>"20", "xml_views"=>"1", "html_views"=>"56"}
  • {"month"=>"7", "year"=>"2019", "pdf_views"=>"19", "xml_views"=>"5", "html_views"=>"61"}
  • {"month"=>"8", "year"=>"2019", "pdf_views"=>"10", "xml_views"=>"1", "html_views"=>"43"}

PMC Usage Stats

  • {"unique-ip"=>"2", "full-text"=>"2", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"10"}
  • {"unique-ip"=>"15", "full-text"=>"29", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"11"}
  • {"unique-ip"=>"15", "full-text"=>"24", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"12"}
  • {"unique-ip"=>"18", "full-text"=>"14", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"8", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"1"}
  • {"unique-ip"=>"16", "full-text"=>"18", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"6", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"2"}
  • {"unique-ip"=>"12", "full-text"=>"15", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"6", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"3"}
  • {"unique-ip"=>"22", "full-text"=>"29", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"17", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"4"}
  • {"unique-ip"=>"29", "full-text"=>"35", "pdf"=>"9", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"6", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2017", "month"=>"5"}
  • {"unique-ip"=>"8", "full-text"=>"9", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"6"}
  • {"unique-ip"=>"16", "full-text"=>"15", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"7"}
  • {"unique-ip"=>"14", "full-text"=>"13", "pdf"=>"4", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"8"}
  • {"unique-ip"=>"27", "full-text"=>"41", "pdf"=>"14", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"14", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2017", "month"=>"9"}
  • {"unique-ip"=>"9", "full-text"=>"11", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"10"}
  • {"unique-ip"=>"22", "full-text"=>"18", "pdf"=>"7", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"7", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2017", "month"=>"11"}
  • {"unique-ip"=>"10", "full-text"=>"8", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2017", "month"=>"12"}
  • {"unique-ip"=>"15", "full-text"=>"14", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2018", "month"=>"1"}
  • {"unique-ip"=>"24", "full-text"=>"27", "pdf"=>"7", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"3"}
  • {"unique-ip"=>"15", "full-text"=>"16", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"1"}
  • {"unique-ip"=>"20", "full-text"=>"22", "pdf"=>"5", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2018", "month"=>"9"}
  • {"unique-ip"=>"17", "full-text"=>"13", "pdf"=>"12", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2018", "month"=>"4"}
  • {"unique-ip"=>"15", "full-text"=>"15", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"5"}
  • {"unique-ip"=>"26", "full-text"=>"30", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"2", "cited-by"=>"1", "year"=>"2018", "month"=>"11"}
  • {"unique-ip"=>"14", "full-text"=>"19", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"6"}
  • {"unique-ip"=>"17", "full-text"=>"18", "pdf"=>"5", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2018", "month"=>"7"}
  • {"unique-ip"=>"22", "full-text"=>"28", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"9", "supp-data"=>"3", "cited-by"=>"1", "year"=>"2018", "month"=>"12"}
  • {"unique-ip"=>"18", "full-text"=>"20", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2018", "month"=>"10"}
  • {"unique-ip"=>"20", "full-text"=>"26", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"8"}
  • {"unique-ip"=>"15", "full-text"=>"17", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2019", "month"=>"2"}
  • {"unique-ip"=>"7", "full-text"=>"7", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2019", "month"=>"3"}
  • {"unique-ip"=>"10", "full-text"=>"11", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"4"}
  • {"unique-ip"=>"8", "full-text"=>"6", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"5"}
Loading … Spinner
There are currently no alerts