Chapare Virus, a Newly Discovered Arenavirus Isolated from a Fatal Hemorrhagic Fever Case in Bolivia
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{"title"=>"Chapare virus, a newly discovered arenavirus isolated from a fatal hemorrhagic fever case in Bolivia", "type"=>"journal", "authors"=>[{"first_name"=>"Simon", "last_name"=>"Delgado", "scopus_author_id"=>"24170979600"}, {"first_name"=>"Bobbie R.", "last_name"=>"Erickson", "scopus_author_id"=>"7201472722"}, {"first_name"=>"Roberto", "last_name"=>"Agudo", "scopus_author_id"=>"24170641100"}, {"first_name"=>"Patrick J.", "last_name"=>"Blair", "scopus_author_id"=>"7101645273"}, {"first_name"=>"Efrain", "last_name"=>"Vallejo", "scopus_author_id"=>"24172267200"}, {"first_name"=>"César G.", "last_name"=>"Albariño", "scopus_author_id"=>"6602711394"}, {"first_name"=>"Jorge", "last_name"=>"Vargas", "scopus_author_id"=>"24172889300"}, {"first_name"=>"James A.", "last_name"=>"Comer", "scopus_author_id"=>"7103319132"}, {"first_name"=>"Pierre E.", "last_name"=>"Rollin", "scopus_author_id"=>"7101827480"}, {"first_name"=>"Thomas G.", "last_name"=>"Ksiazek", "scopus_author_id"=>"7101963789"}, {"first_name"=>"James G.", "last_name"=>"Olson", "scopus_author_id"=>"7402882890"}, {"first_name"=>"Stuart T.", "last_name"=>"Nichol", "scopus_author_id"=>"7007051048"}], "year"=>2008, "source"=>"PLoS Pathogens", "identifiers"=>{"issn"=>"15537366", "scopus"=>"2-s2.0-43049116526", "sgr"=>"43049116526", "pui"=>"351631071", "isbn"=>"1553-7374 (Electronic)", "pmid"=>"18421377", "doi"=>"10.1371/journal.ppat.1000047"}, "id"=>"4db2f24c-d603-3d30-8cf3-170d61b69544", "abstract"=>"A small focus of hemorrhagic fever (HF) cases occurred near Cochabamba, Bolivia, in December 2003 and January 2004. Specimens were available from only one fatal case, which had a clinical course that included fever, headache, arthralgia, myalgia, and vomiting with subsequent deterioration and multiple hemorrhagic signs. A non-cytopathic virus was isolated from two of the patient serum samples, and identified as an arenavirus by IFA staining with a rabbit polyvalent antiserum raised against South American arenaviruses known to be associated with HF (Guanarito, Machupo, and Sabiá). RT-PCR analysis and subsequent analysis of the complete virus S and L RNA segment sequences identified the virus as a member of the New World Clade B arenaviruses, which includes all the pathogenic South American arenaviruses. The virus was shown to be most closely related to Sabiá virus, but with 26% and 30% nucleotide difference in the S and L segments, and 26%, 28%, 15% and 22% amino acid differences for the L, Z, N, and GP proteins, respectively, indicating the virus represents a newly discovered arenavirus, for which we propose the name Chapare virus. In conclusion, two different arenaviruses, Machupo and Chapare, can be associated with severe HF cases in Bolivia.", "link"=>"http://www.mendeley.com/research/chapare-virus-newly-discovered-arenavirus-isolated-fatal-hemorrhagic-fever-case-bolivia", "reader_count"=>108, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Professor > Associate Professor"=>5, "Researcher"=>43, "Student > Doctoral Student"=>9, "Student > Ph. D. Student"=>23, "Student > Postgraduate"=>3, "Student > Master"=>11, "Other"=>1, "Student > Bachelor"=>6, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>3, "Professor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Professor > Associate Professor"=>5, "Researcher"=>43, "Student > Doctoral Student"=>9, "Student > Ph. D. Student"=>23, "Student > Postgraduate"=>3, "Student > Master"=>11, "Other"=>1, "Student > Bachelor"=>6, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>3, "Professor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>5, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>6, "Mathematics"=>1, "Agricultural and Biological Sciences"=>65, "Medicine and Dentistry"=>19, "Veterinary Science and Veterinary Medicine"=>2, "Business, Management and Accounting"=>3, "Psychology"=>2, "Chemistry"=>1, "Immunology and Microbiology"=>2, "Economics, Econometrics and Finance"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>19}, "Chemistry"=>{"Chemistry"=>1}, "Psychology"=>{"Psychology"=>2}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>2}, "Economics, Econometrics and Finance"=>{"Economics, Econometrics and Finance"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>65}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>3}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>6}, "Mathematics"=>{"Mathematics"=>1}, "Unspecified"=>{"Unspecified"=>5}, "Environmental Science"=>{"Environmental Science"=>1}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>2}}, "reader_count_by_country"=>{"Venezuela"=>1, "Czech Republic"=>1, "Belgium"=>1, "United States"=>4, "Brazil"=>2, "South Africa"=>1, "United Kingdom"=>1, "France"=>1, "Chile"=>1, "Bolivia"=>1, "Germany"=>1}, "group_count"=>16}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/933425"], "description"=>"a<p>Complete nucleotide segments only</p>b<p>Complete amino acid sequences only</p>c<p>Complete segment or gene sequence is not available for one or both viruses</p>", "links"=>[], "tags"=>["chapare", "differences"], "article_id"=>603860, "categories"=>["Infectious Diseases", "Computational Biology", "Microbiology", "Virology", "Molecular Biology", "Cancer", "Genetics", "Evolutionary Biology"], "users"=>["Simon Delgado", "Bobbie R. Erickson", "Roberto Agudo", "Patrick J. Blair", "Efrain Vallejo", "César G. Albariño", "Jorge Vargas", "James A. Comer", "Pierre E. Rollin", "Thomas G. Ksiazek", "James G. Olson", "Stuart T. Nichol"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000047.t001", "stats"=>{"downloads"=>3, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Differences_between_Chapare_virus_and_its_closest_relative_Sabi_225_are_similar_to_differences_between_other_distinct_species_of_arenavirus_/603860", "title"=>"Differences between Chapare virus and its closest relative, Sabiá, are similar to differences between other distinct species of arenavirus", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2008-04-18 01:04:20"}
  • {"files"=>["https://ndownloader.figshare.com/files/933377"], "description"=>"a<p>Complete nucleotide segments only</p>b<p>Complete amino acid sequences only</p>c<p>Complete segment or gene sequence is not available for more than one strain</p>", "links"=>[], "tags"=>["strains"], "article_id"=>603814, "categories"=>["Infectious Diseases", "Computational Biology", "Microbiology", "Virology", "Molecular Biology", "Cancer", "Genetics", "Evolutionary Biology"], "users"=>["Simon Delgado", "Bobbie R. Erickson", "Roberto Agudo", "Patrick J. Blair", "Efrain Vallejo", "César G. Albariño", "Jorge Vargas", "James A. Comer", "Pierre E. Rollin", "Thomas G. Ksiazek", "James G. Olson", "Stuart T. Nichol"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000047.t002", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Differences_among_strains_of_the_same_species_of_arenavirus_/603814", "title"=>"Differences among strains of the same species of arenavirus", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2008-04-18 01:03:34"}
  • {"files"=>["https://ndownloader.figshare.com/files/933248"], "description"=>"<p>Complete S and L segments for New World arenaviruses were analyzed by Bayesian inference of phylogeny (MrBayes3.1.2) using the sequence of Pichindé virus as the outgroup. Multiple strains are grouped with small brackets and large brackets group the arenavirus Clades: A, A/Rec, B, and C. The Genbank accession numbers for the S segment analysis include: Allpahuayo (AY012686), Amapari (AF485256), Bear Canyon (AY924392), Catarina (DQ865245), Chapare (EU260463), Cupixi (AF512832), Flexal (AF485257), Guanarito (NC_005077), Junín (AY619641, NC_005081, AY746353), Latino (AF512830), Machupo (AY924208, AY619645, AY924202, NC_005078), Oliveros (U34248), Paraná (AF485261), Pichindé (NC_006447), Pirital (NC_005894), Sabiá (NC_006317), Tacaribe (NC_004293), Tamiami (AF485263), and Whitewater Arroyo (AF485264). The Genbank accession numbers used for the L segment analysis include: Allpahuayo (NC_010249), Amapari (AY924389), Bear Canyon (AY924390), Chapare (EU260464), Cupixi (NC_010252), Guanarito (NC_005082), Junín (NC_005080, AY819707, AY619640), Machupo (AY624354, NC_005079, AY619644), Oliveros (NC_010250), Pichindé (NC_006439), Pirital (NC_005897), Sabiá (NC_006313), Tacaribe (NC_004292), Tamiami (AY924393), and Whitewater Arroyo (AY924395).</p>", "links"=>[], "tags"=>["rna", "segments"], "article_id"=>603684, "categories"=>["Infectious Diseases", "Computational Biology", "Microbiology", "Virology", "Molecular Biology", "Cancer", "Genetics", "Evolutionary Biology"], "users"=>["Simon Delgado", "Bobbie R. Erickson", "Roberto Agudo", "Patrick J. Blair", "Efrain Vallejo", "César G. Albariño", "Jorge Vargas", "James A. Comer", "Pierre E. Rollin", "Thomas G. Ksiazek", "James G. Olson", "Stuart T. Nichol"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000047.g002", "stats"=>{"downloads"=>1, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_analysis_of_the_complete_S_and_L_RNA_segments_of_New_World_arenaviruses_/603684", "title"=>"Phylogenetic analysis of the complete S and L RNA segments of New World arenaviruses.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-04-18 01:01:24"}
  • {"files"=>["https://ndownloader.figshare.com/files/933104"], "description"=>"<p>The Beni Department boundary is depicted by the checkered line. Multiple Machupo isolates have been recorded from the Beni Department. The single Latino and Chapare virus locations are labeled and represented as dots.</p>", "links"=>[], "tags"=>["Bolivia", "chapare", "virus-associated", "hf", "beni", "machupo", "cases"], "article_id"=>603529, "categories"=>["Infectious Diseases", "Computational Biology", "Microbiology", "Virology", "Molecular Biology", "Cancer", "Genetics", "Evolutionary Biology"], "users"=>["Simon Delgado", "Bobbie R. Erickson", "Roberto Agudo", "Patrick J. Blair", "Efrain Vallejo", "César G. Albariño", "Jorge Vargas", "James A. Comer", "Pierre E. Rollin", "Thomas G. Ksiazek", "James G. Olson", "Stuart T. Nichol"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000047.g001", "stats"=>{"downloads"=>2, "page_views"=>218, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Map_of_Bolivia_showing_location_of_the_Chapare_virus_associated_HF_case_relative_to_the_Beni_region_where_Machupo_virus_associated_HF_cases_originate_/603529", "title"=>"Map of Bolivia showing location of the Chapare virus-associated HF case relative to the Beni region where Machupo virus-associated HF cases originate.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-04-18 00:58:49"}
  • {"files"=>["https://ndownloader.figshare.com/files/459932"], "description"=>"<div><p>A small focus of hemorrhagic fever (HF) cases occurred near Cochabamba, Bolivia, in December 2003 and January 2004. Specimens were available from only one fatal case, which had a clinical course that included fever, headache, arthralgia, myalgia, and vomiting with subsequent deterioration and multiple hemorrhagic signs. A non-cytopathic virus was isolated from two of the patient serum samples, and identified as an arenavirus by IFA staining with a rabbit polyvalent antiserum raised against South American arenaviruses known to be associated with HF (Guanarito, Machupo, and Sabiá). RT-PCR analysis and subsequent analysis of the complete virus S and L RNA segment sequences identified the virus as a member of the New World Clade B arenaviruses, which includes all the pathogenic South American arenaviruses. The virus was shown to be most closely related to Sabiá virus, but with 26% and 30% nucleotide difference in the S and L segments, and 26%, 28%, 15% and 22% amino acid differences for the L, Z, N, and GP proteins, respectively, indicating the virus represents a newly discovered arenavirus, for which we propose the name Chapare virus. In conclusion, two different arenaviruses, Machupo and Chapare, can be associated with severe HF cases in Bolivia.</p></div>", "links"=>[], "tags"=>["chapare", "discovered", "arenavirus", "hemorrhagic", "Bolivia"], "article_id"=>150610, "categories"=>["Cancer", "Biological Sciences", "Microbiology", "Molecular Biology", "Genetics", "Evolutionary Biology"], "users"=>["Simon Delgado", "Bobbie R. Erickson", "Roberto Agudo", "Patrick J. Blair", "Efrain Vallejo", "César G. Albariño", "Jorge Vargas", "James A. Comer", "Pierre E. Rollin", "Thomas G. Ksiazek", "James G. Olson", "Stuart T. Nichol"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000047", "stats"=>{"downloads"=>1, "page_views"=>18, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Chapare_Virus_a_Newly_Discovered_Arenavirus_Isolated_from_a_Fatal_Hemorrhagic_Fever_Case_in_Bolivia/150610", "title"=>"Chapare Virus, a Newly Discovered Arenavirus Isolated from a Fatal Hemorrhagic Fever Case in Bolivia", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2008-04-18 00:10:10"}

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  • {"unique-ip"=>"16", "full-text"=>"22", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2019", "month"=>"2"}
  • {"unique-ip"=>"15", "full-text"=>"17", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"3"}
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  • {"unique-ip"=>"95", "full-text"=>"110", "pdf"=>"16", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"2", "cited-by"=>"1", "year"=>"2019", "month"=>"8"}
  • {"unique-ip"=>"51", "full-text"=>"73", "pdf"=>"7", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"9"}
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Relative Metric

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