Quantitative Models of In Vitro Bacteriophage–Host Dynamics and Their Application to Phage Therapy
Publication Date
January 02, 2009
Journal
PLOS Pathogens
Authors
Benjamin J. Cairns, Andrew R. Timms, Vincent A. A. Jansen, Ian F. Connerton, et al
Volume
5
Issue
1
Pages
e1000253
DOI
https://dx.plos.org/10.1371/journal.ppat.1000253
Publisher URL
http://journals.plos.org/plospathogens/article?id=10.1371%2Fjournal.ppat.1000253
PubMed
http://www.ncbi.nlm.nih.gov/pubmed/19119417
PubMed Central
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2603284
Europe PMC
http://europepmc.org/abstract/MED/19119417
Web of Science
000263927800030
Scopus
59249101576
Mendeley
http://www.mendeley.com/research/quantitative-models-vitro-bacteriophagehost-dynamics-application-phage-therapy
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Mendeley | Further Information

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CrossRef

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/911543"], "description"=>"<p>The plot shows data from one of the three cultures in the binding assay, with observed concentrations of free phages in log<sub>10</sub> PFU mL<sup>−1</sup> (points) and the fitted curve <i>V</i>(<i>t</i>) (line), derived from Equation 1. Lysis of infected hosts is well synchronised at approximately 1.3 hours, although this is exaggerated by the fitted curve. The phage concentration does not appear to increase, which is consistent with the low estimate for the burst size (approximately equal to 2 virions).</p>", "links"=>[], "tags"=>["phages", "bacterial", "hosts", "phage", "lysis", "infected"], "article_id"=>581991, "categories"=>["Engineering", "Plant Biology", "Microbiology", "Biotechnology", "Infectious Diseases", "Virology", "Pharmacology", "Biological Sciences"], "users"=>["Benjamin J. Cairns", "Andrew R. Timms", "Vincent A. A. Jansen", "Ian F. Connerton", "Robert J. H. Payne"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000253.g002", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Binding_of_phages_to_bacterial_hosts_and_the_subsequent_release_of_phage_at_lysis_of_infected_cells_/581991", "title"=>"Binding of phages to bacterial hosts and the subsequent release of phage at lysis of infected cells.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:11:13"}
  • {"files"=>["https://ndownloader.figshare.com/files/911828"], "description"=>"<p>Estimates were obtained by maximum likelihood as described in the text; parameter notation is as in <a href=\"http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1000253#ppat-1000253-t001\" target=\"_blank\">Table 1</a>. The total AIC for this model is 4948.075. There is a strong positive relationship between the logarithm of the initial phage concentration and the logarithms of the inundation threshold <i>V<sub>I</sub></i> and proliferation threshold <i>S<sub>P</sub></i>, which together indicate dose-dependence of the binding rate <i>b</i>.</p>", "links"=>[], "tags"=>["parameters", "allowed", "fitted"], "article_id"=>582279, "categories"=>["Engineering", "Plant Biology", "Microbiology", "Biotechnology", "Infectious Diseases", "Virology", "Pharmacology", "Biological Sciences"], "users"=>["Benjamin J. Cairns", "Andrew R. Timms", "Vincent A. A. Jansen", "Ian F. Connerton", "Robert J. H. Payne"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000253.t003", "stats"=>{"downloads"=>5, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Model_parameters_from_Equation_1_where_parameters_are_allowed_to_vary_between_cultures_fitted_to_data_from_the_interaction_experiments_/582279", "title"=>"Model parameters from Equation 1 where parameters are allowed to vary between cultures, fitted to data from the interaction experiments.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 07:12:42"}
  • {"files"=>["https://ndownloader.figshare.com/files/911640"], "description"=>"<p>Concentrations of <i>C. jejuni</i> (circles; black) and phage (triangles; red) vary together in a way consistent with the threshold theory of phage-bacterial interactions. Fitted models in which parameters are either common to all (dashed) or allowed to vary between cultures (solid). Panels (A–H) correspond to cultures 1–8, respectively, with fitted parameters as given in <a href=\"http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1000253#ppat-1000253-t002\" target=\"_blank\">Table 2</a> and <a href=\"http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1000253#ppat-1000253-t003\" target=\"_blank\">Table 3</a>.</p>", "links"=>[], "tags"=>["experiments", "fitted", "curves"], "article_id"=>582101, "categories"=>["Engineering", "Plant Biology", "Microbiology", "Biotechnology", "Infectious Diseases", "Virology", "Pharmacology", "Biological Sciences"], "users"=>["Benjamin J. Cairns", "Andrew R. Timms", "Vincent A. A. Jansen", "Ian F. Connerton", "Robert J. H. Payne"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000253.g003", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Data_from_interaction_experiments_together_with_fitted_curves_obtained_by_maximum_likelihood_estimation_/582101", "title"=>"Data from interaction experiments together with fitted curves obtained by maximum likelihood estimation.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:11:44"}
  • {"files"=>["https://ndownloader.figshare.com/files/911787"], "description"=>"<p>Estimates were obtained by maximum likelihood as described in the text; parameter notation is as in <a href=\"http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1000253#ppat-1000253-t001\" target=\"_blank\">Table 1</a>. The total AIC for this model is 5765.540.</p>", "links"=>[], "tags"=>["parameters", "fitted"], "article_id"=>582247, "categories"=>["Engineering", "Plant Biology", "Microbiology", "Biotechnology", "Infectious Diseases", "Virology", "Pharmacology", "Biological Sciences"], "users"=>["Benjamin J. Cairns", "Andrew R. Timms", "Vincent A. A. Jansen", "Ian F. Connerton", "Robert J. H. Payne"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000253.t002", "stats"=>{"downloads"=>2, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Model_parameters_from_Equation_1_where_parameters_are_common_to_all_cultures_fitted_to_data_from_the_interaction_experiments_/582247", "title"=>"Model parameters from Equation 1 where parameters are common to all cultures, fitted to data from the interaction experiments.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 07:12:32"}
  • {"files"=>["https://ndownloader.figshare.com/files/911760"], "description"=>"<p>Fitted values for these parameters are given in <a href=\"http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1000253#ppat-1000253-t002\" target=\"_blank\">Table 2</a> and <a href=\"http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1000253#ppat-1000253-t003\" target=\"_blank\">Table 3</a>.</p>", "links"=>[], "tags"=>["parameters"], "article_id"=>582219, "categories"=>["Engineering", "Plant Biology", "Microbiology", "Biotechnology", "Infectious Diseases", "Virology", "Pharmacology", "Biological Sciences"], "users"=>["Benjamin J. Cairns", "Andrew R. Timms", "Vincent A. A. Jansen", "Ian F. Connerton", "Robert J. H. Payne"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000253.t001", "stats"=>{"downloads"=>1, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Definitions_of_model_parameters_for_Equation_1_/582219", "title"=>"Definitions of model parameters for Equation 1.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-21 07:12:22"}
  • {"files"=>["https://ndownloader.figshare.com/files/911424"], "description"=>"<p>The plot shows data from one of the three cultures in the phage decay experiment, with observed concentrations in log<sub>10</sub> PFU mL<sup>−1</sup> (points) and the fitted curve log<sub>10 </sub><i>V</i>(<i>t</i>) = log<sub>10 </sub><i>V</i><sub>0</sub>−<i>mt</i> (line). The phage concentration declines linearly on log-linear axes, indicating approximately exponential decay with estimated rate 1.062×10<sup>−2</sup> h<sup>−1</sup>.</p>", "links"=>[], "tags"=>["decay"], "article_id"=>581875, "categories"=>["Engineering", "Plant Biology", "Microbiology", "Biotechnology", "Infectious Diseases", "Virology", "Pharmacology", "Biological Sciences"], "users"=>["Benjamin J. Cairns", "Andrew R. Timms", "Vincent A. A. Jansen", "Ian F. Connerton", "Robert J. H. Payne"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000253.g001", "stats"=>{"downloads"=>0, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phage_decay_in_the_culture_medium_in_the_absence_of_hosts_/581875", "title"=>"Phage decay in the culture medium in the absence of hosts.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-21 07:10:28"}

PMC Usage Stats | Further Information

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  • {"unique-ip"=>"18", "full-text"=>"26", "pdf"=>"9", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"3", "year"=>"2020", "month"=>"7"}
  • {"unique-ip"=>"13", "full-text"=>"12", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"8"}
  • {"unique-ip"=>"30", "full-text"=>"32", "pdf"=>"9", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"9"}
  • {"unique-ip"=>"33", "full-text"=>"35", "pdf"=>"13", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"10"}
  • {"unique-ip"=>"13", "full-text"=>"15", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2020", "month"=>"11"}

Relative Metric

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