Genetic Detection and Characterization of Lujo Virus, a New Hemorrhagic Fever–Associated Arenavirus from Southern Africa
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{"title"=>"Genetic detection and characterization of Lujo virus, a new hemorrhagic fever-associated arenavirus from southern Africa", "type"=>"journal", "authors"=>[{"first_name"=>"Thomas", "last_name"=>"Briese", "scopus_author_id"=>"7003898074"}, {"first_name"=>"Janusz T.", "last_name"=>"Paweska", "scopus_author_id"=>"7004330281"}, {"first_name"=>"Laura K.", "last_name"=>"McMullan", "scopus_author_id"=>"6602305401"}, {"first_name"=>"Stephen K.", "last_name"=>"Hutchison", "scopus_author_id"=>"7006378847"}, {"first_name"=>"Craig", "last_name"=>"Street", "scopus_author_id"=>"19036357300"}, {"first_name"=>"Gustavo", "last_name"=>"Palacios", "scopus_author_id"=>"7006052275"}, {"first_name"=>"Marina L.", "last_name"=>"Khristova", "scopus_author_id"=>"7005582015"}, {"first_name"=>"Jacqueline", "last_name"=>"Weyer", "scopus_author_id"=>"23991418800"}, {"first_name"=>"Robert", "last_name"=>"Swanepoel", "scopus_author_id"=>"7004599740"}, {"first_name"=>"Michael", "last_name"=>"Egholm", "scopus_author_id"=>"7003454634"}, {"first_name"=>"Stuart T.", "last_name"=>"Nichol", "scopus_author_id"=>"7007051048"}, {"first_name"=>"W. Ian", "last_name"=>"Lipkin", "scopus_author_id"=>"7005714572"}], "year"=>2009, "source"=>"PLoS Pathogens", "identifiers"=>{"sgr"=>"67249156188", "doi"=>"10.1371/journal.ppat.1000455", "pui"=>"354743711", "pmid"=>"19478873", "scopus"=>"2-s2.0-67249156188", "issn"=>"15537366", "isbn"=>"1553-7374 (Electronic)\\r1553-7366 (Linking)"}, "id"=>"520abaf4-f83e-3d5c-9e7b-ec903983c329", "abstract"=>"Lujo virus (LUJV), a new member of the family Arenaviridae and the first hemorrhagic fever-associated arenavirus from the Old World discovered in three decades, was isolated in South Africa during an outbreak of human disease characterized by nosocomial transmission and an unprecedented high case fatality rate of 80% (4/5 cases). Unbiased pyrosequencing of RNA extracts from serum and tissues of outbreak victims enabled identification and detailed phylogenetic characterization within 72 hours of sample receipt. Full genome analyses of LUJV showed it to be unique and branching off the ancestral node of the Old World arenaviruses. The virus G1 glycoprotein sequence was highly diverse and almost equidistant from that of other Old World and New World arenaviruses, consistent with a potential distinctive receptor tropism. LUJV is a novel, genetically distinct, highly pathogenic arenavirus.", "link"=>"http://www.mendeley.com/research/genetic-detection-characterization-lujo-virus-new-hemorrhagic-feverassociated-arenavirus-southern-af", "reader_count"=>229, "reader_count_by_academic_status"=>{"Unspecified"=>6, "Professor > Associate Professor"=>11, "Librarian"=>1, "Student > Doctoral Student"=>5, "Researcher"=>83, "Student > Ph. D. Student"=>59, "Student > Postgraduate"=>7, "Student > Master"=>22, "Other"=>13, "Student > Bachelor"=>7, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>4, "Professor"=>10}, "reader_count_by_user_role"=>{"Unspecified"=>6, "Professor > Associate Professor"=>11, "Librarian"=>1, "Student > Doctoral Student"=>5, "Researcher"=>83, "Student > Ph. D. Student"=>59, "Student > Postgraduate"=>7, "Student > Master"=>22, "Other"=>13, "Student > Bachelor"=>7, "Lecturer"=>1, "Lecturer > Senior Lecturer"=>4, "Professor"=>10}, "reader_count_by_subject_area"=>{"Unspecified"=>13, "Agricultural and Biological Sciences"=>127, "Arts and Humanities"=>1, "Veterinary Science and Veterinary Medicine"=>5, "Chemistry"=>2, "Computer Science"=>5, "Economics, Econometrics and Finance"=>1, "Engineering"=>2, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>22, "Mathematics"=>1, "Medicine and Dentistry"=>33, "Social Sciences"=>3, "Immunology and Microbiology"=>13}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>33}, "Social Sciences"=>{"Social Sciences"=>3}, "Mathematics"=>{"Mathematics"=>1}, "Unspecified"=>{"Unspecified"=>13}, "Environmental Science"=>{"Environmental Science"=>1}, "Arts and Humanities"=>{"Arts and Humanities"=>1}, "Engineering"=>{"Engineering"=>2}, "Chemistry"=>{"Chemistry"=>2}, "Economics, Econometrics and Finance"=>{"Economics, Econometrics and Finance"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>13}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>127}, "Computer Science"=>{"Computer Science"=>5}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>22}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>5}}, "reader_count_by_country"=>{"Argentina"=>1, "United States"=>9, "Rwanda"=>1, "Sudan"=>1, "Kenya"=>2, "Portugal"=>1, "India"=>1, "Netherlands"=>1, "Sweden"=>2, "Belgium"=>1, "Denmark"=>1, "Brazil"=>2, "South Africa"=>3, "France"=>3, "Australia"=>1, "Germany"=>1}, "group_count"=>12}

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  • {"files"=>["https://ndownloader.figshare.com/files/896738"], "description"=>"<p>MOBV, MOPV, and IPPYV (blue) have not been implicated in human disease; LASV (red) can cause hemorrhagic fever. The origin of the LUJV index and secondary and tertiary cases linked in the 2008 outbreak are indicated in gold.</p>", "links"=>[], "tags"=>["african"], "article_id"=>567184, "categories"=>["Computational Biology", "Neuroscience", "Infectious Diseases", "Virology", "Medicine"], "users"=>["Thomas Briese", "Janusz T. Paweska", "Laura K. McMullan", "Stephen K. Hutchison", "Craig Street", "Gustavo Palacios", "Marina L. Khristova", "Jacqueline Weyer", "Robert Swanepoel", "Michael Egholm", "Stuart T. Nichol", "W. Ian Lipkin"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000455.g001", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Geographic_distribution_of_African_arenaviruses_/567184", "title"=>"Geographic distribution of African arenaviruses.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-05-29 01:59:44"}
  • {"files"=>["https://ndownloader.figshare.com/files/896848"], "description"=>"<p>Open reading frames (ORF) for the glycoprotein precursor GPC, the nucleoprotein NP, the matrix protein analog Z, and the polymerase L, and their orientation are indicated (A); blue bars represent sequences obtained by pyrosequencing from clinical samples. Secondary structure predictions of intergenic regions (IR) for S (B, C) and L segment sequence (D, E) in genomic (B, D) and antigenomic orientation (C, E) were analyzed by mfold; shading indicates the respective termination codon (opal, position 1), and its reverse-complement, respectively.</p>", "links"=>[], "tags"=>["genome", "intergenic"], "article_id"=>567290, "categories"=>["Computational Biology", "Neuroscience", "Infectious Diseases", "Virology", "Medicine"], "users"=>["Thomas Briese", "Janusz T. Paweska", "Laura K. McMullan", "Stephen K. Hutchison", "Craig Street", "Gustavo Palacios", "Marina L. Khristova", "Jacqueline Weyer", "Robert Swanepoel", "Michael Egholm", "Stuart T. Nichol", "W. Ian Lipkin"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000455.g002", "stats"=>{"downloads"=>4, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_LUJV_genome_organization_and_potential_secondary_structure_of_intergenic_regions_/567290", "title"=>"LUJV genome organization and potential secondary structure of intergenic regions.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-05-29 02:01:30"}
  • {"files"=>["https://ndownloader.figshare.com/files/444019", "https://ndownloader.figshare.com/files/444060", "https://ndownloader.figshare.com/files/444236"], "description"=>"<div><p>Lujo virus (LUJV), a new member of the family <em>Arenaviridae</em> and the first hemorrhagic fever–associated arenavirus from the Old World discovered in three decades, was isolated in South Africa during an outbreak of human disease characterized by nosocomial transmission and an unprecedented high case fatality rate of 80% (4/5 cases). Unbiased pyrosequencing of RNA extracts from serum and tissues of outbreak victims enabled identification and detailed phylogenetic characterization within 72 hours of sample receipt. Full genome analyses of LUJV showed it to be unique and branching off the ancestral node of the Old World arenaviruses. The virus G1 glycoprotein sequence was highly diverse and almost equidistant from that of other Old World and New World arenaviruses, consistent with a potential distinctive receptor tropism. LUJV is a novel, genetically distinct, highly pathogenic arenavirus.</p></div>", "links"=>[], "tags"=>["detection", "characterization", "lujo", "hemorrhagic", "arenavirus", "africa"], "article_id"=>147523, "categories"=>["Biological Sciences", "Neuroscience", "Cancer", "Medicine"], "users"=>["Thomas Briese", "Janusz T. Paweska", "Laura K. McMullan", "Stephen K. Hutchison", "Craig Street", "Gustavo Palacios", "Marina L. Khristova", "Jacqueline Weyer", "Robert Swanepoel", "Michael Egholm", "Stuart T. Nichol", "W. Ian Lipkin"], "doi"=>["https://dx.doi.org/10.1371/journal.ppat.1000455.s001", "https://dx.doi.org/10.1371/journal.ppat.1000455.s002", "https://dx.doi.org/10.1371/journal.ppat.1000455.s003"], "stats"=>{"downloads"=>5, "page_views"=>16, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Genetic_Detection_and_Characterization_of_Lujo_Virus_a_New_Hemorrhagic_Fever_Associated_Arenavirus_from_Southern_Africa/147523", "title"=>"Genetic Detection and Characterization of Lujo Virus, a New Hemorrhagic Fever–Associated Arenavirus from Southern Africa", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2009-05-29 02:05:23"}
  • {"files"=>["https://ndownloader.figshare.com/files/897173"], "description"=>"<p>Conservation of LUJV amino acid motifs with respect to all other (green highlight), to OW (yellow highlight), or to NW (blue highlight) arenaviruses is indicated; grey highlight indicates features unique to LUJV. Polymerase motifs pre-A (L<sub>1142</sub>), A (N<sub>1209</sub>), B (M<sub>1313</sub>), C (L<sub>1345</sub>), D (Q<sub>1386</sub>), and E (C<sub>1398</sub>) are indicated for the L ORF; potential myristoylation site G<sub>2</sub>, the RING motif H<sub>34</sub>/C<sub>76</sub>, and potential late domains YXXL an PSAP are indicated for the Z ORF; and myristoylation site G<sub>2</sub>, posttranslational processing sites for signalase (S<sub>59</sub>/S<sub>60</sub>) and S1P cleavage (RKLM<sub>221</sub>), CTL epitope (I<sub>32</sub>), zinc finger motif P<sub>415</sub>/G<sub>440</sub>, as well as conserved cysteine residues and glycosylations sites (Y) are indicated for GPC. * late domain absent in NW viruses and DANV; † PSAP or PTAP in NW viruses, except in PIRV and TCRV (OW viruses: PPPY); # G in all viruses except LCMV ( = A); ‡ D in NW clade A only; § conserved with respect to OW, and NW clade A and C; <i>HD</i>, hydrophobic domain; <i>TM</i>, transmembrane anchor.</p>", "links"=>[], "tags"=>["conserved"], "article_id"=>567622, "categories"=>["Computational Biology", "Neuroscience", "Infectious Diseases", "Virology", "Medicine"], "users"=>["Thomas Briese", "Janusz T. Paweska", "Laura K. McMullan", "Stephen K. Hutchison", "Craig Street", "Gustavo Palacios", "Marina L. Khristova", "Jacqueline Weyer", "Robert Swanepoel", "Michael Egholm", "Stuart T. Nichol", "W. Ian Lipkin"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000455.g004", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Schematic_of_conserved_protein_motifs_/567622", "title"=>"Schematic of conserved protein motifs.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-05-29 02:07:02"}
  • {"files"=>["https://ndownloader.figshare.com/files/897043"], "description"=>"<p>Phylogenetic relationships of LUJV were inferred based on full L (A) and S segment nucleotide sequence (B), as well as on deduced amino acid sequences of L (C), NP (D), Signal/G2 (E) and G1 (F) ORF's. Phylogenies were reconstructed by neighbor-joining analysis applying a Jukes-Cantor model; the scale bar indicates substitutions per site; robust boostrap support for the positioning of LUJV was obtained in all cases (>98% of 1000 pseudoreplicates). GenBank Accession numbers for reference sequences are: ALLV CLHP2472 (AY216502, AY012687); AMAV BeAn70563 (AF512834); BCNV AVA0070039 (AY924390, AY922491), A0060209 (AY216503); CATV AVA0400135 (DQ865244), AVA0400212 (DQ865245); CHPV 810419 (EU, 260464, EU260463); CPXV BeAn119303 (AY216519, AF512832); DANV 0710-2678 (EU136039, EU136038); FLEV BeAn293022 (EU627611, AF512831); GTOV INH-95551 (AY358024, AF485258), CVH-960101 (AY497548); IPPYV DakAnB188d (DQ328878, DQ328877); JUNV MC2 (AY216507, D10072), XJ13 (AY358022, AY358023), CbalV4454 (DQ272266); LASV LP (AF181853), 803213 (AF181854), Weller (AY628206), AV (AY179171, AF246121), Z148 (AY628204, AY628205), Josiah (U73034, J043204), NL (AY179172, AY179173); LATV MARU10924 (EU627612, AF485259); LCMV Armstrong (AY847351), ARM53b (M20869), WE (AF004519, M22138), Marseille12 (DQ286932, DQ286931), M1 (AB261991); MACV Carvallo (AY619642, AY619643), Chicava (AY624354, AY624355), Mallele (AY619644, AY619645), MARU222688 (AY922407), 9530537 (AY571959); MOBV ACAR3080MRC5P2 (DQ328876, AY342390); MOPV AN20410 (AY772169, AY772170), Mozambique (DQ328875, DQ328874); NAAV AVD1240007 (EU123329); OLVV 3229-1 (AY216514, U34248); PARV 12056 (EU627613, AF485261); PICV (K02734), MunchiqueCoAn4763 (EF529745, EF529744), AN3739 (AF427517); PIRV VAV-488 (AY216505, AF277659); SABV SPH114202 (AY358026, U41071); SKTV AVD1000090 (EU123328); TAMV W10777 (EU627614, AF512828); TCRV (J04340, M20304); WWAV AV9310135 (AY924395, AF228063).</p>", "links"=>[], "tags"=>["analyses"], "article_id"=>567494, "categories"=>["Computational Biology", "Neuroscience", "Infectious Diseases", "Virology", "Medicine"], "users"=>["Thomas Briese", "Janusz T. Paweska", "Laura K. McMullan", "Stephen K. Hutchison", "Craig Street", "Gustavo Palacios", "Marina L. Khristova", "Jacqueline Weyer", "Robert Swanepoel", "Michael Egholm", "Stuart T. Nichol", "W. Ian Lipkin"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1000455.g003", "stats"=>{"downloads"=>1, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_analyses_of_LUJV_/567494", "title"=>"Phylogenetic analyses of LUJV.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2009-05-29 02:04:54"}

PMC Usage Stats | Further Information

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Relative Metric

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