The Role of Animal Models for Research on Severe Malaria
Publication Date
February 02, 2012
Journal
PLOS Pathogens
Authors
Alister G. Craig, Georges E. Grau, Chris Janse, James W. Kazura, et al
Volume
8
Issue
2
Pages
e1002401
DOI
https://dx.plos.org/10.1371/journal.ppat.1002401
Publisher URL
http://journals.plos.org/plospathogens/article?id=10.1371%2Fjournal.ppat.1002401
PubMed
http://www.ncbi.nlm.nih.gov/pubmed/22319438
PubMed Central
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3271056
Europe PMC
http://europepmc.org/abstract/MED/22319438
Web of Science
000300728100001
Scopus
84860903822
Mendeley
http://www.mendeley.com/research/role-animal-models-research-severe-malaria-6
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Mendeley | Further Information

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Draft RMP genomes have been published for Plasmodium yoelii, P. berghei ANKA (PbA) and P. chabaudi AS (PcAS). Although availability of these genomes made a significant impact on recent malaria research, these genomes were highly fragmented and were annotated with little manual curation. The fragmented nature of the genomes has hampered genome wide analysis of Plasmodium gene regulation and function. We have greatly improved the genome assemblies of PbA and PcAS, newly sequenced the virulent parasite P. yoelii YM genome, sequenced additional RMP isolates/lines and have characterized genotypic diversity within RMP species. We have produced RNA-seq data and utilised it to improve gene-model prediction and to provide quantitative, genome-wide, data on gene expression. Comparison of the RMP genomes with the genome of the human malaria parasite P. falciparum and RNA-seq mapping permitted gene annotation at base-pair resolution. Full-length chromosomal annotation permitted a comprehensive classification of all subtelomeric multigene families including the `Plasmodium interspersed repeat genes' (pir). Phylogenetic classification of the pir family, combined with pir expression patterns, indicates functional diversification within this family. Complete RMP genomes, RNA-seq and genotypic diversity data are excellent and important resources for gene-function and post-genomic analyses and to better interrogate Plasmodium biology. Genotypic diversity between P. chabaudi isolates makes this species an excellent parasite to study genotype-phenotype relationships. 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CrossRef

Scopus | Further Information

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Relative Metric

{"start_date"=>"2012-01-01T00:00:00Z", "end_date"=>"2012-12-31T00:00:00Z", "subject_areas"=>[{"subject_area"=>"/Biology and life sciences/Organisms", "average_usage"=>[331, 557, 677, 777, 868, 960, 1050, 1136, 1223, 1307, 1390, 1466, 1536, 1603, 1673, 1741, 1814, 1889, 1954, 2028, 2096, 2164, 2233, 2305, 2362]}, {"subject_area"=>"/Biology and life sciences/Parasitology", "average_usage"=>[352, 609, 728, 831, 918, 998, 1091, 1195, 1289, 1369, 1442, 1504, 1573, 1647, 1722, 1799, 1877, 1938, 2013, 2106, 2166, 2242, 2306, 2371, 2452]}, {"subject_area"=>"/Medicine and health sciences/Hematology", "average_usage"=>[300, 532, 651, 749, 842, 929, 1022, 1106, 1192, 1267, 1351, 1423, 1489, 1553, 1631, 1694, 1764, 1835, 1899, 1964, 2027, 2087, 2159, 2228, 2280]}, {"subject_area"=>"/Medicine and health sciences/Tropical diseases", "average_usage"=>[318, 641, 793, 914, 1020, 1113, 1234, 1345, 1446, 1565, 1664, 1752, 1824, 1900, 1980, 2054, 2132, 2215, 2270, 2358, 2434, 2498, 2579, 2629, 2698]}]}
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