Influenza A Virus on Oceanic Islands: Host and Viral Diversity in Seabirds in the Western Indian Ocean
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{"title"=>"Influenza A Virus on Oceanic Islands: Host and Viral Diversity in Seabirds in the Western Indian Ocean", "type"=>"journal", "authors"=>[{"first_name"=>"Camille", "last_name"=>"Lebarbenchon", "scopus_author_id"=>"55916803500"}, {"first_name"=>"Audrey", "last_name"=>"Jaeger", "scopus_author_id"=>"26221803600"}, {"first_name"=>"Chris", "last_name"=>"Feare", "scopus_author_id"=>"6701610077"}, {"first_name"=>"Matthieu", "last_name"=>"Bastien", "scopus_author_id"=>"55916282600"}, {"first_name"=>"Muriel", "last_name"=>"Dietrich", "scopus_author_id"=>"36243278800"}, {"first_name"=>"Christine", "last_name"=>"Larose", "scopus_author_id"=>"56192626400"}, {"first_name"=>"Erwan", "last_name"=>"Lagadec", "scopus_author_id"=>"37072590600"}, {"first_name"=>"Gérard", "last_name"=>"Rocamora", "scopus_author_id"=>"8099888900"}, {"first_name"=>"Nirmal", "last_name"=>"Shah", "scopus_author_id"=>"7401824266"}, {"first_name"=>"Hervé", "last_name"=>"Pascalis", "scopus_author_id"=>"6508265083"}, {"first_name"=>"Thierry", "last_name"=>"Boulinier", "scopus_author_id"=>"7004284067"}, {"first_name"=>"Matthieu", "last_name"=>"Le Corre", "scopus_author_id"=>"7003495178"}, {"first_name"=>"David E.", "last_name"=>"Stallknecht", "scopus_author_id"=>"7007126331"}, {"first_name"=>"Koussay", "last_name"=>"Dellagi", "scopus_author_id"=>"7005168819"}], "year"=>2015, "source"=>"PLoS Pathogens", "identifiers"=>{"scopus"=>"2-s2.0-84930341581", "sgr"=>"84930341581", "issn"=>"15537374", "doi"=>"10.1371/journal.ppat.1004925", "pmid"=>"25996394", "isbn"=>"1553-7374", "pui"=>"604704943"}, "id"=>"bf6e9470-e746-334e-9c97-49350b8686d3", "abstract"=>"Ducks and seabirds are natural hosts for influenza A viruses (IAV). On oceanic islands, the ecology of IAV could be affected by the relative diversity, abundance and density of seabirds and ducks. Seabirds are the most abundant and widespread avifauna in the Western Indian Ocean and, in this region, oceanic islands represent major breeding sites for a large diversity of potential IAV host species. Based on serological assays, we assessed the host range of IAV and the virus subtype diversity in terns of the islands of the Western Indian Ocean. We further investigated the spatial variation in virus transmission patterns between islands and identified the origin of circulating viruses using a molecular approach. Our findings indicate that terns represent a major host for IAV on oceanic islands, not only for seabird-related virus subtypes such as H16, but also for those commonly isolated in wild and domestic ducks (H3, H6, H9, H12 subtypes). We also identified strong species-associated variation in virus exposure that may be associated to differences in the ecology and behaviour of terns. We discuss the role of tern migrations in the spread of viruses to and between oceanic islands, in particular for the H2 and H9 IAV subtypes.", "link"=>"http://www.mendeley.com/research/influenza-virus-oceanic-islands-host-viral-diversity-seabirds-western-indian-ocean", "reader_count"=>19, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>3, "Student > Doctoral Student"=>1, "Researcher"=>4, "Student > Ph. D. Student"=>5, "Student > Postgraduate"=>3, "Other"=>1, "Student > Master"=>2}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>3, "Student > Doctoral Student"=>1, "Researcher"=>4, "Student > Ph. D. Student"=>5, "Student > Postgraduate"=>3, "Other"=>1, "Student > Master"=>2}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Environmental Science"=>3, "Agricultural and Biological Sciences"=>10, "Veterinary Science and Veterinary Medicine"=>1, "Immunology and Microbiology"=>4}, "reader_count_by_subdiscipline"=>{"Immunology and Microbiology"=>{"Immunology and Microbiology"=>4}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>10}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>3}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>1}}, "reader_count_by_country"=>{"Reunion"=>1, "United States"=>1}, "group_count"=>1}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/2078746"], "description"=>"<p>Posterior probability higher than 0.8 are reported. Reunion Island viruses are indicated in bold. Red branches indicate the genetic lineage including the most recent ancestors of the Reunion Island viruses.</p>", "links"=>[], "tags"=>["oceanic islands", "virus transmission patterns", "Western Indian Ocean Ducks", "Western Indian Ocean", "virus subtype diversity", "H 9 IAV subtypes", "IAV host species"], "article_id"=>1423040, "categories"=>["Biological Sciences"], "users"=>["Camille Lebarbenchon", "Audrey Jaeger", "Chris Feare", "Matthieu Bastien", "Muriel Dietrich", "Christine Larose", "Erwan Lagadec", "Gérard Rocamora", "Nirmal Shah", "Hervé Pascalis", "Thierry Boulinier", "Matthieu Le Corre", "David E. Stallknecht", "Koussay Dellagi"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1004925.g004", "stats"=>{"downloads"=>2, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Maximum_clade_credibility_tree_derived_from_106_influenza_A_virus_H2_hemagglutinin_nucleotide_sequences_908_bp_/1423040", "title"=>"Maximum clade credibility tree derived from 106 influenza A virus H2 hemagglutinin nucleotide sequences (908 bp).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-05-21 04:02:47"}
  • {"files"=>["https://ndownloader.figshare.com/files/2078743"], "description"=>"<p>Numbers indicate the proportion of sample that tested positive for each subtype, based on the total number of samples tested for the same subtype. For instance, for sooty terns, 9 out of the 35 tested serum samples (26%) tested positive for the detection of H9 antibodies. Detailed results are presented in <a href=\"http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1004925#ppat.1004925.s004\" target=\"_blank\">S4 Table</a>.</p>", "links"=>[], "tags"=>["oceanic islands", "virus transmission patterns", "Western Indian Ocean Ducks", "Western Indian Ocean", "virus subtype diversity", "H 9 IAV subtypes", "IAV host species"], "article_id"=>1423037, "categories"=>["Biological Sciences"], "users"=>["Camille Lebarbenchon", "Audrey Jaeger", "Chris Feare", "Matthieu Bastien", "Muriel Dietrich", "Christine Larose", "Erwan Lagadec", "Gérard Rocamora", "Nirmal Shah", "Hervé Pascalis", "Thierry Boulinier", "Matthieu Le Corre", "David E. Stallknecht", "Koussay Dellagi"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1004925.g003", "stats"=>{"downloads"=>1, "page_views"=>18, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Hemagglutinin_HA_specific_antibody_diversity_in_species_in_the_Charadriiformes_order_/1423037", "title"=>"Hemagglutinin (HA)-specific antibody diversity in species in the Charadriiformes order.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-05-21 04:02:47"}
  • {"files"=>["https://ndownloader.figshare.com/files/2078741"], "description"=>"<p>Sampling locations (red circles).</p>", "links"=>[], "tags"=>["oceanic islands", "virus transmission patterns", "Western Indian Ocean Ducks", "Western Indian Ocean", "virus subtype diversity", "H 9 IAV subtypes", "IAV host species"], "article_id"=>1423035, "categories"=>["Biological Sciences"], "users"=>["Camille Lebarbenchon", "Audrey Jaeger", "Chris Feare", "Matthieu Bastien", "Muriel Dietrich", "Christine Larose", "Erwan Lagadec", "Gérard Rocamora", "Nirmal Shah", "Hervé Pascalis", "Thierry Boulinier", "Matthieu Le Corre", "David E. Stallknecht", "Koussay Dellagi"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1004925.g001", "stats"=>{"downloads"=>0, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Sampling_locations_red_circles_/1423035", "title"=>"Sampling locations (red circles).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-05-21 04:02:47"}
  • {"files"=>["https://ndownloader.figshare.com/files/2078742"], "description"=>"<p>Prevalence of seropositive samples (percentage with 95% confidence interval), for each island and bird order (red: Charadriiformes; green: Procellariformes; purple: Phaethontiformes; blue: Suliformes). (B) Influenza A virus host diversity in birds in the Charadriiformes order. Prevalence of seropositive samples (percentage with 95% confidence interval), for each island and bird species (black: Lesser noddy; gray: Brown noddy; white: Sooty tern).</p>", "links"=>[], "tags"=>["oceanic islands", "virus transmission patterns", "Western Indian Ocean Ducks", "Western Indian Ocean", "virus subtype diversity", "H 9 IAV subtypes", "IAV host species"], "article_id"=>1423036, "categories"=>["Biological Sciences"], "users"=>["Camille Lebarbenchon", "Audrey Jaeger", "Chris Feare", "Matthieu Bastien", "Muriel Dietrich", "Christine Larose", "Erwan Lagadec", "Gérard Rocamora", "Nirmal Shah", "Hervé Pascalis", "Thierry Boulinier", "Matthieu Le Corre", "David E. Stallknecht", "Koussay Dellagi"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1004925.g002", "stats"=>{"downloads"=>0, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_Influenza_A_virus_host_diversity_/1423036", "title"=>"(A) Influenza A virus host diversity.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-05-21 04:02:47"}
  • {"files"=>["https://ndownloader.figshare.com/files/2078748", "https://ndownloader.figshare.com/files/2078749", "https://ndownloader.figshare.com/files/2078750", "https://ndownloader.figshare.com/files/2078751", "https://ndownloader.figshare.com/files/2078752"], "description"=>"<div><p>Ducks and seabirds are natural hosts for influenza A viruses (IAV). On oceanic islands, the ecology of IAV could be affected by the relative diversity, abundance and density of seabirds and ducks. Seabirds are the most abundant and widespread avifauna in the Western Indian Ocean and, in this region, oceanic islands represent major breeding sites for a large diversity of potential IAV host species. Based on serological assays, we assessed the host range of IAV and the virus subtype diversity in terns of the islands of the Western Indian Ocean. We further investigated the spatial variation in virus transmission patterns between islands and identified the origin of circulating viruses using a molecular approach. Our findings indicate that terns represent a major host for IAV on oceanic islands, not only for seabird-related virus subtypes such as H16, but also for those commonly isolated in wild and domestic ducks (H3, H6, H9, H12 subtypes). We also identified strong species-associated variation in virus exposure that may be associated to differences in the ecology and behaviour of terns. We discuss the role of tern migrations in the spread of viruses to and between oceanic islands, in particular for the H2 and H9 IAV subtypes.</p></div>", "links"=>[], "tags"=>["oceanic islands", "virus transmission patterns", "Western Indian Ocean Ducks", "Western Indian Ocean", "virus subtype diversity", "H 9 IAV subtypes", "IAV host species"], "article_id"=>1423042, "categories"=>["Biological Sciences"], "users"=>["Camille Lebarbenchon", "Audrey Jaeger", "Chris Feare", "Matthieu Bastien", "Muriel Dietrich", "Christine Larose", "Erwan Lagadec", "Gérard Rocamora", "Nirmal Shah", "Hervé Pascalis", "Thierry Boulinier", "Matthieu Le Corre", "David E. Stallknecht", "Koussay Dellagi"], "doi"=>["https://dx.doi.org/10.1371/journal.ppat.1004925.s001", "https://dx.doi.org/10.1371/journal.ppat.1004925.s002", "https://dx.doi.org/10.1371/journal.ppat.1004925.s003", "https://dx.doi.org/10.1371/journal.ppat.1004925.s004", "https://dx.doi.org/10.1371/journal.ppat.1004925.s005"], "stats"=>{"downloads"=>2, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Influenza_A_Virus_on_Oceanic_Islands_Host_and_Viral_Diversity_in_Seabirds_in_the_Western_Indian_Ocean_/1423042", "title"=>"Influenza A Virus on Oceanic Islands: Host and Viral Diversity in Seabirds in the Western Indian Ocean", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2015-05-21 04:02:47"}

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Relative Metric

{"start_date"=>"2015-01-01T00:00:00Z", "end_date"=>"2015-12-31T00:00:00Z", "subject_areas"=>[]}
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