CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms
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{"title"=>"CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms", "type"=>"journal", "authors"=>[{"first_name"=>"Jan", "last_name"=>"Pawlowski", "scopus_author_id"=>"7103199199"}, {"first_name"=>"Stéphane", "last_name"=>"Audic", "scopus_author_id"=>"6602862007"}, {"first_name"=>"Sina", "last_name"=>"Adl", "scopus_author_id"=>"6602669792"}, {"first_name"=>"David", "last_name"=>"Bass", "scopus_author_id"=>"35482991800"}, {"first_name"=>"Lassaâd", "last_name"=>"Belbahri", "scopus_author_id"=>"14044796400"}, {"first_name"=>"Cédric", "last_name"=>"Berney", "scopus_author_id"=>"7006143420"}, {"first_name"=>"Samuel S.", "last_name"=>"Bowser", "scopus_author_id"=>"7005376582"}, {"first_name"=>"Ivan", "last_name"=>"Cepicka", "scopus_author_id"=>"6508007784"}, {"first_name"=>"Johan", "last_name"=>"Decelle", "scopus_author_id"=>"36101128200"}, {"first_name"=>"Micah", "last_name"=>"Dunthorn", "scopus_author_id"=>"15757155200"}, {"first_name"=>"Anna Maria", "last_name"=>"Fiore-Donno", "scopus_author_id"=>"6503939870"}, {"first_name"=>"Gillian H.", "last_name"=>"Gile", "scopus_author_id"=>"14827703200"}, {"first_name"=>"Maria", "last_name"=>"Holzmann", "scopus_author_id"=>"7006465767"}, {"first_name"=>"Regine", "last_name"=>"Jahn", "scopus_author_id"=>"7102002077"}, {"first_name"=>"Miloslav", "last_name"=>"Jirků", "scopus_author_id"=>"9735518200"}, {"first_name"=>"Patrick J.", "last_name"=>"Keeling", "scopus_author_id"=>"35552607600"}, {"first_name"=>"Martin", "last_name"=>"Kostka", "scopus_author_id"=>"6602877598"}, {"first_name"=>"Alexander", "last_name"=>"Kudryavtsev", "scopus_author_id"=>"7103326096"}, {"first_name"=>"Enrique", "last_name"=>"Lara", "scopus_author_id"=>"23982938200"}, {"first_name"=>"Julius", "last_name"=>"Lukeš", "scopus_author_id"=>"7006991129"}, {"first_name"=>"David G.", "last_name"=>"Mann", "scopus_author_id"=>"7402056240"}, {"first_name"=>"Edward A.D.", "last_name"=>"Mitchell", "scopus_author_id"=>"7201803814"}, {"first_name"=>"Frank", "last_name"=>"Nitsche", "scopus_author_id"=>"24067445600"}, {"first_name"=>"Maria", "last_name"=>"Romeralo", "scopus_author_id"=>"15830210300"}, {"first_name"=>"Gary W.", "last_name"=>"Saunders", "scopus_author_id"=>"7202000208"}, {"first_name"=>"Alastair G.B.", "last_name"=>"Simpson", "scopus_author_id"=>"7402780491"}, {"first_name"=>"Alexey V.", "last_name"=>"Smirnov", "scopus_author_id"=>"35477905300"}, {"first_name"=>"John L.", "last_name"=>"Spouge", "scopus_author_id"=>"7005453937"}, {"first_name"=>"Rowena F.", "last_name"=>"Stern", "scopus_author_id"=>"36616533100"}, {"first_name"=>"Thorsten", "last_name"=>"Stoeck", "scopus_author_id"=>"6603680790"}, {"first_name"=>"Jonas", "last_name"=>"Zimmermann", "scopus_author_id"=>"43562094600"}, {"first_name"=>"David", "last_name"=>"Schindel", "scopus_author_id"=>"36867841200"}, {"first_name"=>"Colomban", "last_name"=>"de Vargas", "scopus_author_id"=>"6603028438"}], "year"=>2012, "source"=>"PLoS Biology", "identifiers"=>{"issn"=>"15449173", "scopus"=>"2-s2.0-84870260174", "pui"=>"366156148", "doi"=>"10.1371/journal.pbio.1001419", "isbn"=>"1545-7885 (Electronic)\\r1544-9173 (Linking)", "sgr"=>"84870260174", "pmid"=>"23139639"}, "id"=>"2f0a1f56-eb10-3181-a652-96b196f68090", "abstract"=>"A group of protist experts proposes a two-step DNA barcoding approach, comprising a universal eukaryotic pre-barcode followed by group-specific barcodes, to unveil the hidden biodiversity of microbial eukaryotes.", "link"=>"http://www.mendeley.com/research/cbol-protist-working-group-barcoding-eukaryotic-richness-beyond-animal-plant-fungal-kingdoms", "reader_count"=>195, "reader_count_by_academic_status"=>{"Unspecified"=>6, "Professor > Associate Professor"=>16, "Librarian"=>1, "Researcher"=>49, "Student > Doctoral Student"=>9, "Student > Ph. 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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/547234"], "description"=>"<p>(A) Relative numbers of described species per eukaryotic supergroup—see <a href=\"http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1001419#pbio.1001419.s001\" target=\"_blank\">Table S1</a> for a detailed count per division/class. (B) Relative number of V4 18S rDNA Operational Taxonomic Units (97%) per eukaryotic supergroup, based on 59 rDNA clone library surveys of marine, fresh-water, and terrestrial total eukaryotic biodiversity (as listed in <a href=\"http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1001419#pbio.1001419-delCampo1\" target=\"_blank\">[55]</a>).</p>", "links"=>[], "tags"=>["views", "eukaryotic"], "article_id"=>217688, "categories"=>["Genetics", "Microbiology"], "users"=>["Jan Pawlowski", "Stéphane Audic", "Sina Adl", "David Bass", "Lassaâd Belbahri", "Cédric Berney", "Samuel S. Bowser", "Ivan Cepicka", "Johan Decelle", "Micah Dunthorn", "Anna Maria Fiore-Donno", "Gillian H. Gile", "Maria Holzmann", "Regine Jahn", "Miloslav Jirků", "Patrick J. Keeling", "Martin Kostka", "Alexander Kudryavtsev", "Enrique Lara", "Julius Lukeš", "David G. Mann", "Edward A. D. Mitchell", "Frank Nitsche", "Maria Romeralo", "Gary W. Saunders", "Alastair G. B. Simpson", "Alexey V. Smirnov", "John L. Spouge", "Rowena F. Stern", "Thorsten Stoeck", "Jonas Zimmermann", "David Schindel", "Colomban de Vargas"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.1001419.g001", "stats"=>{"downloads"=>0, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Morphological_versus_genetic_views_of_total_eukaryotic_diversity_/217688", "title"=>"Morphological versus genetic views of total eukaryotic diversity.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-06 02:08:08"}
  • {"files"=>["https://ndownloader.figshare.com/files/547540"], "description"=>"<p>Protistan species, spanning four orders of cell-size magnitude (from <1 µm to >10,000 µm), are individually sorted from the environment, phenotyped either directly or after culture growth, DNA extracted, and barcoded using a two-step, nested strategy.</p>", "links"=>[], "tags"=>["Protist", "barcoding"], "article_id"=>217990, "categories"=>["Genetics", "Microbiology"], "users"=>["Jan Pawlowski", "Stéphane Audic", "Sina Adl", "David Bass", "Lassaâd Belbahri", "Cédric Berney", "Samuel S. Bowser", "Ivan Cepicka", "Johan Decelle", "Micah Dunthorn", "Anna Maria Fiore-Donno", "Gillian H. Gile", "Maria Holzmann", "Regine Jahn", "Miloslav Jirků", "Patrick J. Keeling", "Martin Kostka", "Alexander Kudryavtsev", "Enrique Lara", "Julius Lukeš", "David G. Mann", "Edward A. D. Mitchell", "Frank Nitsche", "Maria Romeralo", "Gary W. Saunders", "Alastair G. B. Simpson", "Alexey V. Smirnov", "John L. Spouge", "Rowena F. Stern", "Thorsten Stoeck", "Jonas Zimmermann", "David Schindel", "Colomban de Vargas"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.1001419.g003", "stats"=>{"downloads"=>0, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Two_step_protist_barcoding_pipeline_/217990", "title"=>"Two-step protist barcoding pipeline.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-06 02:13:10"}
  • {"files"=>["https://ndownloader.figshare.com/files/547394"], "description"=>"<p>(A) A recent phylogeny of eukaryotic life, after <a href=\"http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1001419#pbio.1001419-Burki1\" target=\"_blank\">[56]</a>. (B) Mean V4 18S rDNA genetic similarity between all congeneric species within each lineage, available in GenBank. (C) Currently used group-specific barcodes. The dashed line indicates the incertitude concerning the position of the root in the tree of eukaryotic life. The unresolved relationships between eukaryotic groups are indicated by polytomies. The names of the three multicellular classical “kingdoms” are highlighted.</p>", "links"=>[], "tags"=>["state-of-the", "phylogeny", "barcode", "markers", "protistan"], "article_id"=>217836, "categories"=>["Genetics", "Microbiology"], "users"=>["Jan Pawlowski", "Stéphane Audic", "Sina Adl", "David Bass", "Lassaâd Belbahri", "Cédric Berney", "Samuel S. Bowser", "Ivan Cepicka", "Johan Decelle", "Micah Dunthorn", "Anna Maria Fiore-Donno", "Gillian H. Gile", "Maria Holzmann", "Regine Jahn", "Miloslav Jirků", "Patrick J. Keeling", "Martin Kostka", "Alexander Kudryavtsev", "Enrique Lara", "Julius Lukeš", "David G. Mann", "Edward A. D. Mitchell", "Frank Nitsche", "Maria Romeralo", "Gary W. Saunders", "Alastair G. B. Simpson", "Alexey V. Smirnov", "John L. Spouge", "Rowena F. Stern", "Thorsten Stoeck", "Jonas Zimmermann", "David Schindel", "Colomban de Vargas"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.1001419.g002", "stats"=>{"downloads"=>0, "page_views"=>77, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Current_state_of_the_art_phylogeny_and_barcode_markers_for_the_main_protistan_lineages_/217836", "title"=>"Current state-of-the art phylogeny and barcode markers for the main protistan lineages.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-11-06 02:10:36"}
  • {"files"=>["https://ndownloader.figshare.com/files/292838", "https://ndownloader.figshare.com/files/292903"], "description"=>"CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms", "links"=>[], "tags"=>["cbol", "Protist", "barcoding", "eukaryotic", "richness", "fungal", "kingdoms"], "article_id"=>117631, "categories"=>["Genetics", "Microbiology"], "users"=>["Jan Pawlowski", "Stéphane Audic", "Sina Adl", "David Bass", "Lassaâd Belbahri", "Cédric Berney", "Samuel S. Bowser", "Ivan Cepicka", "Johan Decelle", "Micah Dunthorn", "Anna Maria Fiore-Donno", "Gillian H. Gile", "Maria Holzmann", "Regine Jahn", "Miloslav Jirků", "Patrick J. Keeling", "Martin Kostka", "Alexander Kudryavtsev", "Enrique Lara", "Julius Lukeš", "David G. Mann", "Edward A. D. Mitchell", "Frank Nitsche", "Maria Romeralo", "Gary W. Saunders", "Alastair G. B. Simpson", "Alexey V. Smirnov", "John L. Spouge", "Rowena F. Stern", "Thorsten Stoeck", "Jonas Zimmermann", "David Schindel", "Colomban de Vargas"], "doi"=>["https://dx.doi.org/10.1371/journal.pbio.1001419.s001", "https://dx.doi.org/10.1371/journal.pbio.1001419.s002"], "stats"=>{"downloads"=>12, "page_views"=>35, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/CBOL_Protist_Working_Group_Barcoding_Eukaryotic_Richness_beyond_the_Animal_Plant_and_Fungal_Kingdoms_/117631", "title"=>"CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2012-11-06 02:07:11"}

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Relative Metric

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