CiteULike | Further Information

• {"link"=>{"url"=>"http://www.citeulike.org/user/roys/article/13943087"}, "post_time"=>"2016-02-27 19:06:09", "tag"=>["cis_evolution", "comparative_genomics", "genotype_phenotype", "regulatory_variation"], "linkout"=>{"type"=>"DOI", "url"=>"http://dx.doi.org/10.1371/journal.pbio.1002353"}, "username"=>"roys", "article_id"=>"13943087"}

Mendeley | Further Information

{"title"=>"Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling", "type"=>"journal", "authors"=>[{"first_name"=>"Richard W.R.", "last_name"=>"Wallbank", "scopus_author_id"=>"55484856700"}, {"first_name"=>"Simon W.", "last_name"=>"Baxter", "scopus_author_id"=>"8600199700"}, {"first_name"=>"Carolina", "last_name"=>"Pardo-Diaz", "scopus_author_id"=>"36178306900"}, {"first_name"=>"Joseph J.", "last_name"=>"Hanly", "scopus_author_id"=>"56715333700"}, {"first_name"=>"Simon H.", "last_name"=>"Martin", "scopus_author_id"=>"37102428400"}, {"first_name"=>"James", "last_name"=>"Mallet", "scopus_author_id"=>"7202284097"}, {"first_name"=>"Kanchon K.", "last_name"=>"Dasmahapatra", "scopus_author_id"=>"6602134403"}, {"first_name"=>"Camilo", "last_name"=>"Salazar", "scopus_author_id"=>"8283928400"}, {"first_name"=>"Mathieu", "last_name"=>"Joron", "scopus_author_id"=>"6602305237"}, {"first_name"=>"Nicola", "last_name"=>"Nadeau", "scopus_author_id"=>"6602449934"}, {"first_name"=>"W. Owen", "last_name"=>"McMillan", "scopus_author_id"=>"7004840804"}, {"first_name"=>"Chris D.", "last_name"=>"Jiggins", "scopus_author_id"=>"6603932806"}], "year"=>2016, "source"=>"PLoS Biology", "identifiers"=>{"sgr"=>"84961290731", "pmid"=>"26771987", "pui"=>"607981252", "isbn"=>"1545-7885 (Electronic)\r1544-9173 (Linking)", "scopus"=>"2-s2.0-84961290731", "doi"=>"10.1371/journal.pbio.1002353", "issn"=>"15457885"}, "id"=>"f2672c86-40be-393e-a6c9-61e68f257423", "abstract"=>"An important goal in evolutionary biology is to understand the genetic changes underlying novel morphological structures. We investigated the origins of a complex wing pattern found among Amazonian Heliconius butterflies. Genome sequence data from 142 individu- als across 17 species identified narrow regions associated with two distinct red colour pat- tern elements, dennis and ray. We hypothesise that these modules in non-coding sequence represent distinct cis-regulatory loci that control expression of the transcription factor optix, which in turn controls red pattern variation across Heliconius. Phylogenetic analysis of the two elements demonstrated that they have distinct evolutionary histories and that novel adaptive morphological variation was created by shuffling these cis-regulatory modules through recombination between divergent lineages. In addition, recombination of modules into different combinations within species further contributes to diversity. Analysis of the tim- ing of diversification in these two regions supports the hypothesis of introgression moving regulatory modules between species, rather than shared ancestral variation. The dennis phenotype introgressed into Heliconius melpomene at about the same time that ray origi- nated in this group, while ray introgressed back into H. elevatus much more recently. We show that shuffling of existing enhancer elements both within and between species provides a mechanism for rapid diversification and generation of novel morphological combinations during adaptive radiation.", "link"=>"http://www.mendeley.com/research/evolutionary-novelty-butterfly-wing-pattern-through-enhancer-shuffling", "reader_count"=>158, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Professor > Associate Professor"=>11, "Librarian"=>1, "Researcher"=>30, "Student > Doctoral Student"=>9, "Student > Ph. D. Student"=>48, "Student > Postgraduate"=>5, "Student > Master"=>25, "Other"=>4, "Student > Bachelor"=>11, "Lecturer"=>2, "Professor"=>10}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Professor > Associate Professor"=>11, "Librarian"=>1, "Researcher"=>30, "Student > Doctoral Student"=>9, "Student > Ph. D. Student"=>48, "Student > Postgraduate"=>5, "Student > Master"=>25, "Other"=>4, "Student > Bachelor"=>11, "Lecturer"=>2, "Professor"=>10}, "reader_count_by_subject_area"=>{"Engineering"=>2, "Unspecified"=>6, "Environmental Science"=>7, "Biochemistry, Genetics and Molecular Biology"=>22, "Mathematics"=>1, "Agricultural and Biological Sciences"=>111, "Neuroscience"=>2, "Physics and Astronomy"=>1, "Social Sciences"=>1, "Computer Science"=>2, "Immunology and Microbiology"=>1, "Earth and Planetary Sciences"=>2}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>2}, "Neuroscience"=>{"Neuroscience"=>2}, "Social Sciences"=>{"Social Sciences"=>1}, "Physics and Astronomy"=>{"Physics and Astronomy"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>2}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>111}, "Computer Science"=>{"Computer Science"=>2}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>22}, "Mathematics"=>{"Mathematics"=>1}, "Unspecified"=>{"Unspecified"=>6}, "Environmental Science"=>{"Environmental Science"=>7}}, "reader_count_by_country"=>{"Netherlands"=>1, "United States"=>5, "China"=>1, "Japan"=>2, "Brazil"=>1, "Mexico"=>1, "United Kingdom"=>1, "Portugal"=>1, "Spain"=>1}, "group_count"=>2}

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• http://doi.org/10.1186/s13227-019-0129-2
• http://doi.org/10.1002/evl3.12
• http://doi.org/10.1038/s41559-016-0052
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DataCite | Further Information

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Europe PMC Citations

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{"EMBL"=>2}

PubMed Central

• 4777131

Scopus | Further Information

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• {"url"=>"http%3A%2F%2Fjournals.plos.org%2Fplosbiology%2Farticle%3Fid%3D10.1371%252Fjournal.pbio.1002353", "share_count"=>19, "like_count"=>68, "comment_count"=>1, "click_count"=>0, "total_count"=>88}

Journal Comments | Further Information

• {"type"=>"COMMENT", "annotationUri"=>"info:doi/10.1371/annotation/141d24fd-7ef1-4307-b000-cdda4c178af7", "title"=>"An historical context for this study", "body"=>"There is a very long history of appreciation of the importance of hybridisation in the Heliconius community, and some of the early workers were very insightful in predicting phenomena that we can now detect using genomic techniques. This comment is intended to highlight some of this history. For example as early as 1972, Brown and Mielke hypothesised that Heliconius heurippa had a hybrid wing pattern, and this was investigated more fully by Mauricio Linares during his PhD in Texas supervised by Larry Gilbert. Larry also wrote about the importance of hybridisation in generating evolutionary novelty more widely across the genus (Gilbert 2003). He speculated that 'Early in the history of Heliconius the pattern tool box might have gradually diversified through mutation. ... the major ways that species and races now differ may have been quickly accumulated among early evolving species of the genus. At that point we can imagine that hybridization and introgression would have begun to accelerate in importance and quickly would have replaced mutation as the proximate generator for novel pattern genotypes in Heliconius'. Based on his experience of rearing Heliconius, he observed that: 'Virtually all novel and heritable alterations of wing scale pattern seen in my cultures over three decades have proved to be the results of introgression'.\n\nWe are proud to be part of this long tradition of Heliconius biologists and hope that by posting this comment we can place our work into its correct historical context. We thank Arnaud Martin who stimulated the discussion that led to this comment.\n\n\nBrown, K. S., and O. H. H. Mielke. 1972. The heliconians of Brazil (Lepidoptera: Nymphalidae). Part II. Introduction and general comments, with a supplementary revision of the tribe. Zoologica, N.Y. 57: 1-40. \n\nGilbert LE. 2003. Adaptive novelty through introgression in Heliconius wing patterns: Evidence for shared genetic ‘tool box’ from synthetic hybrid zones and a theory of diversification. In: Boggs CL, Watt WB, Ehrlich PR, eds. Ecology and Evolution Taking Flight: Butterflies as Model Systems. Chicago: Univ. of Chicago Press.\n", "isRemoved"=>false, "created"=>"2016-01-22T09:58:53Z", "lastModified"=>"2016-01-22T09:58:53Z", "creator"=>{"userId"=>"536094"}, "highlightedText"=>"", "competingInterestStatement"=>{"creatorWasPrompted"=>true, "hasCompetingInterests"=>false}, "parentArticle"=>{"doi"=>"info:doi/10.1371/journal.pbio.1002353", "state"=>"published", "journals"=>{"PLoSBiology"=>{"journalKey"=>"PLoSBiology", "eIssn"=>"1545-7885", "title"=>"PLOS Biology"}}}, "replyTreeSize"=>0, "mostRecentActivity"=>"2016-01-22T09:58:53Z", "replies"=>[]}

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• {"id"=>"688162574924292096", "text"=>"@TonysPants @Cambridge_Uni I got confused in my excitement, it's actually out already. https://t.co/sAyaXgJpKr", "created_at"=>"2016-01-16T00:55:17Z", "user"=>"Hanliconius", "user_name"=>"Joe Hanly", "user_profile_image"=>"http://pbs.twimg.com/profile_images/554046963898122240/kg2JwIcP_normal.jpeg"}
• {"id"=>"688278602819874817", "text"=>"Nice work from the lab ... https://t.co/QotXUvJwFC Well done Rich et al", "created_at"=>"2016-01-16T08:36:21Z", "user"=>"DickMerrill", "user_name"=>"Richard Merrill", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2638771610/682853f1a32a0c89bf990d8f614863d1_normal.jpeg"}
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• {"id"=>"688372003632508928", "text"=>"los modulos regulatorios en genes adaptativos se intercambian entre especies!!\nhttps://t.co/q1TT7faC4t", "created_at"=>"2016-01-16T14:47:29Z", "user"=>"salazarbiol", "user_name"=>"salazar.camilo", "user_profile_image"=>"http://pbs.twimg.com/profile_images/548184980644720640/mS6c7rqW_normal.jpeg"}
• {"id"=>"688372408613490688", "text"=>"#CienciaCriolla Módulos regulatorios se intercambian entre especies!!! https://t.co/q1TT7faC4t", "created_at"=>"2016-01-16T14:49:06Z", "user"=>"salazarbiol", "user_name"=>"salazar.camilo", "user_profile_image"=>"http://pbs.twimg.com/profile_images/548184980644720640/mS6c7rqW_normal.jpeg"}
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• {"id"=>"688414538505531392", "text"=>"Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling #cienciacriolla @PLOSBiology \nhttps://t.co/oXZPiWm8eo", "created_at"=>"2016-01-16T17:36:30Z", "user"=>"cdanielcadena", "user_name"=>"daniel cadena", "user_profile_image"=>"http://pbs.twimg.com/profile_images/679352661112725505/i5zndWb5_normal.jpg"}
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• {"id"=>"688738625572372480", "text"=>"enhancer shuffling to generate pattern variation\nhttps://t.co/kYDkX0Z79L https://t.co/5CDaR1MlW0", "created_at"=>"2016-01-17T15:04:19Z", "user"=>"veronica_hinman", "user_name"=>"Veronica Hinman", "user_profile_image"=>"http://pbs.twimg.com/profile_images/536701575071162369/Mr296093_normal.jpeg"}
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• {"id"=>"688842542385876992", "text"=>"Top Biology link of the day: https://t.co/T5VgNPBzEf", "created_at"=>"2016-01-17T21:57:14Z", "user"=>"BiologyLinks", "user_name"=>"Biology Today", "user_profile_image"=>"http://pbs.twimg.com/profile_images/674296110169505792/0-ohv3QB_normal.jpg"}
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• {"id"=>"689006080475529216", "text"=>"RT @GreenAwakening: #Amazon #Butterflies' \"genetic paintbox” found. #Mimicry genes independently define forewing/backwing color patterns ht…", "created_at"=>"2016-01-18T08:47:05Z", "user"=>"geographile", "user_name"=>"geographile", "user_profile_image"=>"http://pbs.twimg.com/profile_images/312703906/64947766_ecafdfa8f7_m_normal.jpg"}
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• {"id"=>"689016110612480000", "text"=>"Bi-directional introgression of two cis-regulatory modules for red patterning in Heliconius: https://t.co/lRMahvjGFX", "created_at"=>"2016-01-18T09:26:56Z", "user"=>"johnomics", "user_name"=>"John Davey", "user_profile_image"=>"http://pbs.twimg.com/profile_images/1353316399/twitter_image_normal.jpg"}
• {"id"=>"689016849959415808", "text"=>"RT @mel_rosina: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/usFqOedwTP", "created_at"=>"2016-01-18T09:29:53Z", "user"=>"lepbase", "user_name"=>"LepBase", "user_profile_image"=>"http://pbs.twimg.com/profile_images/579985518718521344/3qB8yEGc_normal.png"}
• {"id"=>"689017203283353600", "text"=>"RT @johnomics: Bi-directional introgression of two cis-regulatory modules for red patterning in Heliconius: https://t.co/lRMahvjGFX", "created_at"=>"2016-01-18T09:31:17Z", "user"=>"mel_rosina", "user_name"=>"Chris Jiggins", "user_profile_image"=>"http://pbs.twimg.com/profile_images/676494238096470020/4I4C53HV_normal.jpg"}
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• {"id"=>"689025961468268544", "text"=>"RT @GreenAwakening: #Amazon #Butterflies' \"genetic paintbox” found. #Mimicry genes independently define forewing/backwing color patterns ht…", "created_at"=>"2016-01-18T10:06:05Z", "user"=>"Goodpathologist", "user_name"=>"Nikolay Landyshev", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2969570974/467b4c13075a1bfe1df7a89d51ccc3db_normal.jpeg"}
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• {"id"=>"689037757784539136", "text"=>"RT @BiologyLinks: Top Biology link of the day: https://t.co/T5VgNPBzEf", "created_at"=>"2016-01-18T10:52:57Z", "user"=>"Campbell_JD_", "user_name"=>"JD Farrell-Campbell", "user_profile_image"=>"http://pbs.twimg.com/profile_images/3097375842/c562c6c40fa81e5144ca99b936036ae3_normal.jpeg"}
• {"id"=>"689049632261844992", "text"=>"RT @veronica_hinman: enhancer shuffling to generate pattern variation\nhttps://t.co/kYDkX0Z79L https://t.co/5CDaR1MlW0", "created_at"=>"2016-01-18T11:40:08Z", "user"=>"duxguitar", "user_name"=>"duxguitar", "user_profile_image"=>"http://pbs.twimg.com/profile_images/688471206958215168/p4lgmI0U_normal.jpg"}
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• {"id"=>"689073295426252800", "text"=>"RT @BiologyLinks: Top Biology link of the day: https://t.co/T5VgNPBzEf", "created_at"=>"2016-01-18T13:14:10Z", "user"=>"mel_rosina", "user_name"=>"Chris Jiggins", "user_profile_image"=>"http://pbs.twimg.com/profile_images/676494238096470020/4I4C53HV_normal.jpg"}
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• {"id"=>"689906849555050496", "text"=>"How do butterflies generate their wing patterns? Check out the paper via @PLOSBiology @mel_rosina https://t.co/Q9jHsQp01h", "created_at"=>"2016-01-20T20:26:25Z", "user"=>"Scimacleod", "user_name"=>"Charlotte Macleod", "user_profile_image"=>"http://pbs.twimg.com/profile_images/628602175141318656/JXeHs2z1_normal.jpg"}
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• {"id"=>"690549582187597825", "text"=>"@pandolfatto @PLOSBiology Works for me - alternatively follow links to comments page from the article https://t.co/usFqOev8ip", "created_at"=>"2016-01-22T15:00:24Z", "user"=>"mel_rosina", "user_name"=>"Chris Jiggins", "user_profile_image"=>"http://pbs.twimg.com/profile_images/676494238096470020/4I4C53HV_normal.jpg"}
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• {"id"=>"710077784731725824", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-16T12:18:31Z", "user"=>"jlwalker97", "user_name"=>"jen walker", "user_profile_image"=>"http://pbs.twimg.com/profile_images/616455651615752192/5sl84n7s_normal.jpg"}
• {"id"=>"710080295513489409", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-16T12:28:29Z", "user"=>"mvidal1954", "user_name"=>"Mar?a de las Nieves", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000730289753/3a9c7b4eeab0d604a9407f723868fbd6_normal.jpeg"}
• {"id"=>"710080636481093632", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-16T12:29:51Z", "user"=>"wpgilks", "user_name"=>"William Gilks", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000743393705/3f0be80038d6a64fe9b2d98a84f8695d_normal.png"}
• {"id"=>"710133410300166144", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-16T15:59:33Z", "user"=>"DesmondRamirez1", "user_name"=>"Desmond Ramirez", "user_profile_image"=>"http://pbs.twimg.com/profile_images/554481313911013377/eUnIV6Wj_normal.jpeg"}
• {"id"=>"710192973938618368", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-16T19:56:14Z", "user"=>"RaquelGarcaPrez", "user_name"=>"Raquel Garc?a P?rez", "user_profile_image"=>"http://pbs.twimg.com/profile_images/623121470647074817/mtaGSo2C_normal.jpg"}
• {"id"=>"711608358705471488", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-20T17:40:28Z", "user"=>"FemoraleShells", "user_name"=>"Femorale Shells", "user_profile_image"=>"http://pbs.twimg.com/profile_images/458944979797164032/MJPm-7Yi_normal.jpeg"}
• {"id"=>"711608893097558016", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-20T17:42:35Z", "user"=>"sjportugal1979", "user_name"=>"Dr. Steve Portugal", "user_profile_image"=>"http://pbs.twimg.com/profile_images/709068415156297729/1w7DNdrY_normal.jpg"}
• {"id"=>"711609225819119616", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-20T17:43:55Z", "user"=>"LouiseJJohnson", "user_name"=>"Louise Johnson", "user_profile_image"=>"http://pbs.twimg.com/profile_images/703919923509260288/v1SENQ_-_normal.jpg"}
• {"id"=>"711609327543570432", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-20T17:44:19Z", "user"=>"AnnieBrassey", "user_name"=>"Annie Brassey", "user_profile_image"=>"http://pbs.twimg.com/profile_images/568026570552377344/9RmdanWI_normal.jpeg"}
• {"id"=>"711611088861679616", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-20T17:51:19Z", "user"=>"vsbuffalo", "user_name"=>"Vince Buffalo", "user_profile_image"=>"http://pbs.twimg.com/profile_images/705089335146651649/e9vk2haq_normal.jpg"}
• {"id"=>"711611456245141504", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-20T17:52:46Z", "user"=>"DuckSwabber", "user_name"=>"Michelle Wille", "user_profile_image"=>"http://pbs.twimg.com/profile_images/431446000352260096/oCHl-p1G_normal.jpeg"}
• {"id"=>"711611647937404928", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-20T17:53:32Z", "user"=>"ardalby", "user_name"=>"andrew dalby", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000785900654/db137f2573665b3091ad03b5937a7302_normal.png"}
• {"id"=>"711615504335687680", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-20T18:08:52Z", "user"=>"yuroubaba", "user_name"=>"Guo Li", "user_profile_image"=>"http://pbs.twimg.com/profile_images/699660694699012096/V-_ba3_V_normal.jpg"}
• {"id"=>"711644689762492416", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-03-20T20:04:50Z", "user"=>"EvolutionPirate", "user_name"=>"Chris Balakrishnan", "user_profile_image"=>"http://pbs.twimg.com/profile_images/3690208461/b41ca01c7d99ceef1cf0f4dd66906c87_normal.jpeg"}
• {"id"=>"712390557897723905", "text"=>"@mel_rosina @jrossibarra @reidbrennan @molecologist @3rdreviewer altho regions do contain ancient divergent alleles https://t.co/BbBFASVswI", "created_at"=>"2016-03-22T21:28:39Z", "user"=>"mel_rosina", "user_name"=>"Chris Jiggins", "user_profile_image"=>"http://pbs.twimg.com/profile_images/701472700770832384/WVURD8Do_normal.png"}
• {"id"=>"714400817567113216", "text"=>"Qu? nos esconde la naturaleza detr?s de esta \"caja de pintura #gen?tica.\"? https://t.co/dbhneWPIy5", "created_at"=>"2016-03-28T10:36:42Z", "user"=>"JuanMAnayaC", "user_name"=>"Juan Manuel Anaya", "user_profile_image"=>"http://pbs.twimg.com/profile_images/653920690589011968/Lu-wS3Ek_normal.jpg"}
• {"id"=>"715622290491379713", "text"=>"RT @Scimacleod: How do butterflies generate their wing patterns? Check out the paper via @PLOSBiology @mel_rosina https://t.co/Q9jHsQp01h", "created_at"=>"2016-03-31T19:30:24Z", "user"=>"mel_rosina", "user_name"=>"Chris Jiggins", "user_profile_image"=>"http://pbs.twimg.com/profile_images/701472700770832384/WVURD8Do_normal.png"}
• {"id"=>"715638982793633793", "text"=>"How do you get new butterfly wing patterns? Change cis regulation! https://t.co/IeOI9mtc3Q", "created_at"=>"2016-03-31T20:36:44Z", "user"=>"KaraEPowder", "user_name"=>"Kara Powder", "user_profile_image"=>"http://pbs.twimg.com/profile_images/710887065861271553/3byj6GEm_normal.jpg"}
• {"id"=>"715662518073626624", "text"=>"RT @KaraEPowder: How do you get new butterfly wing patterns? Change cis regulation! https://t.co/IeOI9mtc3Q", "created_at"=>"2016-03-31T22:10:15Z", "user"=>"avstrauss", "user_name"=>"Amy Strauss", "user_profile_image"=>"http://pbs.twimg.com/profile_images/699257242311401472/XvwsjY6__normal.jpg"}
• {"id"=>"715668380016066560", "text"=>"RT @KaraEPowder: How do you get new butterfly wing patterns? Change cis regulation! https://t.co/IeOI9mtc3Q", "created_at"=>"2016-03-31T22:33:32Z", "user"=>"kingsleyevan", "user_name"=>"Evan Kingsley", "user_profile_image"=>"http://pbs.twimg.com/profile_images/3109337833/d8b909dedc32b4676111231545950472_normal.jpeg"}
• {"id"=>"715828206759182336", "text"=>"RT @KaraEPowder: How do you get new butterfly wing patterns? Change cis regulation! https://t.co/IeOI9mtc3Q", "created_at"=>"2016-04-01T09:08:38Z", "user"=>"mel_rosina", "user_name"=>"Chris Jiggins", "user_profile_image"=>"http://pbs.twimg.com/profile_images/701472700770832384/WVURD8Do_normal.png"}
• {"id"=>"715829861814837248", "text"=>"RT @KaraEPowder: How do you get new butterfly wing patterns? Change cis regulation! https://t.co/IeOI9mtc3Q", "created_at"=>"2016-04-01T09:15:13Z", "user"=>"Thomas_Mathers", "user_name"=>"Tom Mathers", "user_profile_image"=>"http://pbs.twimg.com/profile_images/639024562219425792/ehpIXy9Y_normal.jpg"}
• {"id"=>"716713610064560128", "text"=>"RT @RheeMor: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/JOmOxtvxHB https://t.co/Jl16lxtNnl", "created_at"=>"2016-04-03T19:46:55Z", "user"=>"lanageen2737", "user_name"=>"Lana Green", "user_profile_image"=>"http://pbs.twimg.com/profile_images/703325353348087809/JCRDltTi_normal.jpg"}
• {"id"=>"725037075586793472", "text"=>"UW locals: my student jclub 12:30 Foege: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/VAxBEW3alj", "created_at"=>"2016-04-26T19:01:24Z", "user"=>"DunhamLab", "user_name"=>"Maitreya Dunham", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000302146450/0c10f7c312b896bc6fb4f2d6c686bad4_normal.jpeg"}
• {"id"=>"725234180360167424", "text"=>"RT @DunhamLab: UW locals: my student jclub 12:30 Foege: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https:/…", "created_at"=>"2016-04-27T08:04:37Z", "user"=>"PLOSBiology", "user_name"=>"PLOS Biology", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2432741784/7kk4r2cpabm7u2lqf17y_normal.jpeg"}
• {"id"=>"725235242248736768", "text"=>"RT @DunhamLab: UW locals: my student jclub 12:30 Foege: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https:/…", "created_at"=>"2016-04-27T08:08:50Z", "user"=>"gmopundit", "user_name"=>"gmopundit", "user_profile_image"=>"http://pbs.twimg.com/profile_images/1374081372/David_Tribe_normal.jpg"}
• {"id"=>"726030288141307904", "text"=>"Interesting JIC talk by @mel_rosina on wing patterning, with such beautiful images!\nhttps://t.co/Vz74BQooWm https://t.co/STxh3NOMOD", "created_at"=>"2016-04-29T12:48:04Z", "user"=>"helenbrabs", "user_name"=>"Helen Brabham", "user_profile_image"=>"http://pbs.twimg.com/profile_images/659660337080377344/okQc3_LN_normal.jpg"}
• {"id"=>"726082319245660161", "text"=>"RT @helenbrabs: Interesting JIC talk by @mel_rosina on wing patterning, with such beautiful images!\nhttps://t.co/Vz74BQooWm https://t.co/ST…", "created_at"=>"2016-04-29T16:14:49Z", "user"=>"PLOSBiology", "user_name"=>"PLOS Biology", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2432741784/7kk4r2cpabm7u2lqf17y_normal.jpeg"}
• {"id"=>"726085950695067648", "text"=>"RT @helenbrabs: Interesting JIC talk by @mel_rosina on wing patterning, with such beautiful images!\nhttps://t.co/Vz74BQooWm https://t.co/ST…", "created_at"=>"2016-04-29T16:29:15Z", "user"=>"Kannan9900", "user_name"=>"K", "user_profile_image"=>"http://pbs.twimg.com/profile_images/495787050419757058/gKBQa19D_normal.jpeg"}
• {"id"=>"726452082870476801", "text"=>"RT @helenbrabs: Interesting JIC talk by @mel_rosina on wing patterning, with such beautiful images!\nhttps://t.co/Vz74BQooWm https://t.co/ST…", "created_at"=>"2016-04-30T16:44:08Z", "user"=>"mel_rosina", "user_name"=>"Chris Jiggins", "user_profile_image"=>"http://pbs.twimg.com/profile_images/701472700770832384/WVURD8Do_normal.png"}
• {"id"=>"726494377976184836", "text"=>"RT @helenbrabs: Interesting JIC talk by @mel_rosina on wing patterning, with such beautiful images!\nhttps://t.co/Vz74BQooWm https://t.co/ST…", "created_at"=>"2016-04-30T19:32:11Z", "user"=>"BiolJLinnSoc", "user_name"=>"BJLS", "user_profile_image"=>"http://pbs.twimg.com/profile_images/1595941035/BIJ-Twitter-Logo-2_normal.gif"}
• {"id"=>"729038701058207745", "text"=>"Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/XrNvZXeKLx #PLOSBiology:", "created_at"=>"2016-05-07T20:02:25Z", "user"=>"HochTwit", "user_name"=>"Michael Hochberg", "user_profile_image"=>"http://pbs.twimg.com/profile_images/697722651536658432/SwCIPs0g_normal.jpg"}
• {"id"=>"740849502337257472", "text"=>"I have inadvertently matched @EvoHull journal club paper on enhancer shuffling https://t.co/hPgJaBbCr5 with clothing https://t.co/zP1pOyqxNs", "created_at"=>"2016-06-09T10:14:20Z", "user"=>"domino_joyce", "user_name"=>"Domino Joyce", "user_profile_image"=>"http://pbs.twimg.com/profile_images/1794199021/me_normal.jpg"}
• {"id"=>"740849648294825984", "text"=>"RT @domino_joyce: I have inadvertently matched @EvoHull journal club paper on enhancer shuffling https://t.co/hPgJaBbCr5 with clothing http…", "created_at"=>"2016-06-09T10:14:55Z", "user"=>"EvoHull", "user_name"=>"EvoHull", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2605599575/x9j8u5lol6hgow0c2r98_normal.png"}
• {"id"=>"766617111066251265", "text"=>"PLOS Biology: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/Xf3Ti4y8SW", "created_at"=>"2016-08-19T12:45:36Z", "user"=>"GMHistory", "user_name"=>"History of GM", "user_profile_image"=>"http://pbs.twimg.com/profile_images/686613499494166528/VvaTL6hb_normal.jpg"}
• {"id"=>"766669503694417922", "text"=>"RT @GMHistory: PLOS Biology: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/Xf3Ti4y8SW", "created_at"=>"2016-08-19T16:13:48Z", "user"=>"PLOSBiology", "user_name"=>"PLOS Biology", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2432741784/7kk4r2cpabm7u2lqf17y_normal.jpeg"}
• {"id"=>"766675641064456192", "text"=>"RT @GMHistory: PLOS Biology: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/Xf3Ti4y8SW", "created_at"=>"2016-08-19T16:38:11Z", "user"=>"bourbon_henri", "user_name"=>"Bourbon Henri-Marc", "user_profile_image"=>"http://pbs.twimg.com/profile_images/535797727880175617/4Ogl9y3T_normal.jpeg"}
• {"id"=>"766677638916214784", "text"=>"RT @GMHistory: PLOS Biology: Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling https://t.co/Xf3Ti4y8SW", "created_at"=>"2016-08-19T16:46:07Z", "user"=>"nbierne", "user_name"=>"Nicolas Bierne", "user_profile_image"=>"http://pbs.twimg.com/profile_images/627477786920386561/XMk2Ijgc_normal.jpg"}
• {"id"=>"799110458204680192", "text"=>"@UCSB_OakleyLab enlightening! Will think of butterfly adaptive alleles that introgress btw species as public goods\nhttps://t.co/ji4liVxYyj", "created_at"=>"2016-11-17T04:42:34Z", "user"=>"evolvwing", "user_name"=>"Arnaud Martin", "user_profile_image"=>"http://pbs.twimg.com/profile_images/509097071345795072/HnjSCUzR_normal.jpeg"}
• {"id"=>"804979667002343424", "text"=>"RT @veronica_hinman: enhancer shuffling to generate pattern variation\nhttps://t.co/kYDkX0Z79L https://t.co/5CDaR1MlW0", "created_at"=>"2016-12-03T09:24:43Z", "user"=>"gonzaloandradec", "user_name"=>"Gonzalo Andrade-C.", "user_profile_image"=>"http://pbs.twimg.com/profile_images/785803875349594113/Z8isBaRN_normal.jpg"}
• {"id"=>"805001631842598912", "text"=>"RT @veronica_hinman: enhancer shuffling to generate pattern variation\nhttps://t.co/kYDkX0Z79L https://t.co/5CDaR1MlW0", "created_at"=>"2016-12-03T10:51:59Z", "user"=>"PLOSBiology", "user_name"=>"PLOS Biology", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2432741784/7kk4r2cpabm7u2lqf17y_normal.jpeg"}
• {"id"=>"805009116385185792", "text"=>"RT @veronica_hinman: enhancer shuffling to generate pattern variation\nhttps://t.co/kYDkX0Z79L https://t.co/5CDaR1MlW0", "created_at"=>"2016-12-03T11:21:44Z", "user"=>"anarchistIntel", "user_name"=>"Anarchist Intel", "user_profile_image"=>"http://pbs.twimg.com/profile_images/787703994433011713/fxum4pj4_normal.jpg"}
• {"id"=>"805046389965201408", "text"=>"RT @veronica_hinman: enhancer shuffling to generate pattern variation\nhttps://t.co/kYDkX0Z79L https://t.co/5CDaR1MlW0", "created_at"=>"2016-12-03T13:49:51Z", "user"=>"BoyleLab", "user_name"=>"Boyle L?b", "user_profile_image"=>"http://pbs.twimg.com/profile_images/713717651583995905/QQbDIFAj_normal.jpg"}
• {"id"=>"805075979676721153", "text"=>"RT @veronica_hinman: enhancer shuffling to generate pattern variation\nhttps://t.co/kYDkX0Z79L https://t.co/5CDaR1MlW0", "created_at"=>"2016-12-03T15:47:25Z", "user"=>"shiromegattx", "user_name"=>"????", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2715276762/56738a608d36b90016399e47c3936705_normal.jpeg"}
• {"id"=>"805128154683764737", "text"=>"RT @veronica_hinman: enhancer shuffling to generate pattern variation\nhttps://t.co/kYDkX0Z79L https://t.co/5CDaR1MlW0", "created_at"=>"2016-12-03T19:14:45Z", "user"=>"SDelzon", "user_name"=>"Sylvain Delzon", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2919512283/70bf9367ec98f6dcf75a6071d3560c6f_normal.jpeg"}
• {"id"=>"805139314795364352", "text"=>"RT @veronica_hinman: enhancer shuffling to generate pattern variation\nhttps://t.co/kYDkX0Z79L https://t.co/5CDaR1MlW0", "created_at"=>"2016-12-03T19:59:06Z", "user"=>"MtxMa", "user_name"=>"Pavlov el terrible", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000275620124/765bf294be32b965ba45600d5185ed01_normal.jpeg"}
• {"id"=>"805244924413222912", "text"=>"RT @veronica_hinman: enhancer shuffling to generate pattern variation\nhttps://t.co/kYDkX0Z79L https://t.co/5CDaR1MlW0", "created_at"=>"2016-12-04T02:58:45Z", "user"=>"DrSNilson", "user_name"=>"Sara M. Nilson", "user_profile_image"=>"http://pbs.twimg.com/profile_images/791474220207181828/1t5dFCjz_normal.jpg"}
• {"id"=>"818797028037763072", "text"=>"RT @veronica_hinman: enhancer shuffling to generate pattern variation\nhttps://t.co/kYDkX0Z79L https://t.co/5CDaR1MlW0", "created_at"=>"2017-01-10T12:29:58Z", "user"=>"FemoraleShells", "user_name"=>"Femorale Shells", "user_profile_image"=>"http://pbs.twimg.com/profile_images/458944979797164032/MJPm-7Yi_normal.jpeg"}
• {"id"=>"868068433782550529", "text"=>"NBAF supported \"Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling\" #PLOSBiology https://t.co/WNLMB1UH26", "created_at"=>"2017-05-26T11:36:57Z", "user"=>"NERCBAF", "user_name"=>"NBAF", "user_profile_image"=>"http://pbs.twimg.com/profile_images/709421453356232704/e-blNZDg_normal.jpg"}

Wikipedia | Further Information

• {"title"=>"Heliconius erato", "url"=>"http://en.wikipedia.org/wiki/Heliconius_erato", "timestamp"=>"2018-06-27T01:14:28Z"}
• {"title"=>"Introgressione", "url"=>"http://it.wikipedia.org/wiki/Introgressione", "timestamp"=>"2017-12-23T16:57:49Z"}

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Figshare

• {"files"=>["https://ndownloader.figshare.com/files/2628263"], "description"=>"<p>First row: <i>H</i>. <i>burneyi huebneri</i>, <i>H</i>. <i>aoede auca</i>, and <i>H</i>. <i>xanthocles zamora;</i> second row: <i>H</i>. <i>timareta timareta</i> f. <i>timareta</i>, <i>H</i>. <i>doris doris</i>, and <i>H</i>. <i>demeter ucayalensis;</i> third row: <i>H</i>. <i>melpomene malleti</i>, <i>H</i>. <i>egeria homogena</i>, and <i>H</i>. <i>erato emma</i>; fourth row: <i>H</i>. <i>elevatus pseudocupidineus</i>, <i>Eueides heliconioides eanes</i>, and <i>E</i>. <i>tales calathus</i>; and bottom: <i>Chetone phyleis</i>, a pericopine moth. Stars indicate the three species that are the focus of this study. Butterflies figured are from the Neukirchen Collection, McGuire Centre, Florida. The butterflies are from populations in both Ecuador and Peru.</p>", "links"=>[], "tags"=>["combination", "Butterfly Wing Pattern", "dennis phenotype introgressed", "module", "pattern variation", "Wing Pattern", "region", "Heliconius melpomene", "genome sequence data", "colour pattern elements", "evolutionary novelty", "Amazonian Heliconius butterflies", "Phylogenetic analysis", "ray introgressed", "Enhancer Shuffling", "adaptive radiation", "diversification", "17 species", "control expression", "Enhancer elements", "142 individuals", "novel adaptive", "recombination", "transcription factor optix"], "article_id"=>1638146, "categories"=>["Biological Sciences"], "users"=>["Richard W. R. Wallbank", "Simon W. Baxter", "Carolina Pardo-Diaz", "Joseph J. Hanly", "Simon H. Martin", "James Mallet", "Kanchon K. Dasmahapatra", "Camilo Salazar", "Mathieu Joron", "Nicola Nadeau", "W. Owen McMillan", "Chris D. Jiggins"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.1002353.g001", "stats"=>{"downloads"=>0, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Diversity_of_the_Amazonian_dennis_ray_mimicry_ring_/1638146", "title"=>"Diversity of the Amazonian dennis-ray mimicry ring.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2016-01-28 12:37:00"}
• {"files"=>["https://ndownloader.figshare.com/files/2628352", "https://ndownloader.figshare.com/files/2628353", "https://ndownloader.figshare.com/files/2628354", "https://ndownloader.figshare.com/files/2628355", "https://ndownloader.figshare.com/files/2628356", "https://ndownloader.figshare.com/files/2628357", "https://ndownloader.figshare.com/files/2628358"], "description"=>"<div><p>An important goal in evolutionary biology is to understand the genetic changes underlying novel morphological structures. We investigated the origins of a complex wing pattern found among Amazonian <i>Heliconius</i> butterflies. Genome sequence data from 142 individuals across 17 species identified narrow regions associated with two distinct red colour pattern elements, <i>dennis</i> and <i>ray</i>. We hypothesise that these modules in non-coding sequence represent distinct <i>cis</i>-regulatory loci that control expression of the transcription factor <i>optix</i>, which in turn controls red pattern variation across <i>Heliconius</i>. Phylogenetic analysis of the two elements demonstrated that they have distinct evolutionary histories and that novel adaptive morphological variation was created by shuffling these <i>cis</i>-regulatory modules through recombination between divergent lineages. In addition, recombination of modules into different combinations within species further contributes to diversity. Analysis of the timing of diversification in these two regions supports the hypothesis of introgression moving regulatory modules between species, rather than shared ancestral variation. The dennis phenotype introgressed into <i>Heliconius melpomene</i> at about the same time that ray originated in this group, while ray introgressed back into <i>H</i>. <i>elevatus</i> much more recently. We show that shuffling of existing enhancer elements both within and between species provides a mechanism for rapid diversification and generation of novel morphological combinations during adaptive radiation.</p></div>", "links"=>[], "tags"=>["combination", "Butterfly Wing Pattern", "dennis phenotype introgressed", "module", "pattern variation", "Wing Pattern", "region", "Heliconius melpomene", "genome sequence data", "colour pattern elements", "evolutionary novelty", "Amazonian Heliconius butterflies", "Phylogenetic analysis", "ray introgressed", "Enhancer Shuffling", "adaptive radiation", "diversification", "17 species", "control expression", "Enhancer elements", "142 individuals", "novel adaptive", "recombination", "transcription factor optix"], "article_id"=>1638182, "categories"=>["Biological Sciences"], "users"=>["Richard W. R. Wallbank", "Simon W. Baxter", "Carolina Pardo-Diaz", "Joseph J. Hanly", "Simon H. Martin", "James Mallet", "Kanchon K. Dasmahapatra", "Camilo Salazar", "Mathieu Joron", "Nicola Nadeau", "W. Owen McMillan", "Chris D. Jiggins"], "doi"=>["https://dx.doi.org/10.1371/journal.pbio.1002353.s001", "https://dx.doi.org/10.1371/journal.pbio.1002353.s002", "https://dx.doi.org/10.1371/journal.pbio.1002353.s003", "https://dx.doi.org/10.1371/journal.pbio.1002353.s004", "https://dx.doi.org/10.1371/journal.pbio.1002353.s005", "https://dx.doi.org/10.1371/journal.pbio.1002353.s006", "https://dx.doi.org/10.1371/journal.pbio.1002353.s007"], "stats"=>{"downloads"=>6, "page_views"=>15, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Evolutionary_Novelty_in_a_Butterfly_Wing_Pattern_through_Enhancer_Shuffling_/1638182", "title"=>"Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2016-01-28 12:37:02"}
• {"files"=>["https://ndownloader.figshare.com/files/2628265"], "description"=>"<p>(A) Examples of the principal red wing patterns: dennis-ray <i>H</i>. <i>e</i>. <i>pseudocupidineus</i> and <i>H</i>. <i>m</i>. <i>malleti</i>, dennis-only <i>H</i>. <i>m</i>. <i>meriana</i>, ray-only <i>H</i>. <i>t</i>. <i>timareta</i> f. <i>contigua</i>, and band <i>H</i>. <i>m</i>. <i>rosina</i>. (B) Association analysis across 96 genomes showing statistical association for the dennis (red dots) and ray phenotypes (orange dots). The horizontal black line represents significance after Bonferroni correction. Boxes show exon positions. (C) Sliding window analysis of fixed differences between specific comparisons to identify dennis- and ray-associated sites (orange and red lines—see also <a href=\"http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1002353#pbio.1002353.s001\" target=\"_blank\">S1 Fig</a> and <a href=\"http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1002353#pbio.1002353.s004\" target=\"_blank\">S1 Table</a>). (D) Recombination breakpoints allowed separate isolation of regions fully associated with dennis and ray phenotypes. Informative haplotypes are shown (<i>H</i>. <i>elevatus</i>, <i>H</i>. <i>m</i>. <i>malleti</i>, <i>H</i>. <i>t</i>. <i>timareta</i> f. <i>contigua</i>, <i>H</i>. <i>m</i>. <i>meriana</i>, and <i>H</i>. <i>m</i>. <i>rosina</i>, phenotypes shown above). Genotypes are indicated as D/d for <i>dennis</i> present/absent and R/r for <i>ray</i> present/absent. A <i>H</i>. <i>melpomene</i> recombinant hybrid was heterozygous in the <i>dennis</i> region and homozygous for <i>ray</i>-absent, as expected, but was not informative for precise breakpoint delineation because of missing data. See Dryad depository for plot data [<a href=\"http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1002353#pbio.1002353.ref032\" target=\"_blank\">32</a>].</p>", "links"=>[], "tags"=>["combination", "Butterfly Wing Pattern", "dennis phenotype introgressed", "module", "pattern variation", "Wing Pattern", "region", "Heliconius melpomene", "genome sequence data", "colour pattern elements", "evolutionary novelty", "Amazonian Heliconius butterflies", "Phylogenetic analysis", "ray introgressed", "Enhancer Shuffling", "adaptive radiation", "diversification", "17 species", "control expression", "Enhancer elements", "142 individuals", "novel adaptive", "recombination", "transcription factor optix"], "article_id"=>1638148, "categories"=>["Biological Sciences"], "users"=>["Richard W. R. Wallbank", "Simon W. Baxter", "Carolina Pardo-Diaz", "Joseph J. Hanly", "Simon H. Martin", "James Mallet", "Kanchon K. Dasmahapatra", "Camilo Salazar", "Mathieu Joron", "Nicola Nadeau", "W. Owen McMillan", "Chris D. Jiggins"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.1002353.g002", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Genotype_by_phenotype_association_analyses_and_mapping_of_dennis_and_ray_regions_/1638148", "title"=>"Genotype-by-phenotype association analyses and mapping of <i>dennis</i> and <i>ray</i> regions.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2016-01-28 12:37:00"}
• {"files"=>["https://ndownloader.figshare.com/files/2628266"], "description"=>"<p>Each group of alleles is characterised by a complex structure of insertion and deletion variation. Horizontal bars represent aligned allele sequences for the outgroups (A), silvaniforms (B), <i>H</i>. <i>elevatus</i> (C), dennis morph melpomene/timareta (D), non-dennis morph melpomene/timareta (E), and the cydno/heurippa/pachinus clade (F). There are three general forms of the region: an “outgroup” allele (X) with many indels and lacking large sections of sequence; a silvaniform/dennis allele (Y), which possesses indel 1 and lacks indel 2; and a non-dennis/cydno allele (Z), which lacks indel 1 and possesses indel 2. Dotted lines and blue colouration indicate the point where dennis-morph melpomene/timareta alleles become silvaniform like (left) and where the dennis-only morph, <i>H</i>. <i>m</i>. <i>meriana</i>, recombines with the other non-rayed melpomene (right). Fixed SNPs in perfect association with the dennis phenotype are indicated by yellow asterisks and form two clusters. See Dryad depository for alignment [<a href=\"http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1002353#pbio.1002353.ref032\" target=\"_blank\">32</a>].</p>", "links"=>[], "tags"=>["combination", "Butterfly Wing Pattern", "dennis phenotype introgressed", "module", "pattern variation", "Wing Pattern", "region", "Heliconius melpomene", "genome sequence data", "colour pattern elements", "evolutionary novelty", "Amazonian Heliconius butterflies", "Phylogenetic analysis", "ray introgressed", "Enhancer Shuffling", "adaptive radiation", "diversification", "17 species", "control expression", "Enhancer elements", "142 individuals", "novel adaptive", "recombination", "transcription factor optix"], "article_id"=>1638149, "categories"=>["Biological Sciences"], "users"=>["Richard W. R. Wallbank", "Simon W. Baxter", "Carolina Pardo-Diaz", "Joseph J. Hanly", "Simon H. Martin", "James Mallet", "Kanchon K. Dasmahapatra", "Camilo Salazar", "Mathieu Joron", "Nicola Nadeau", "W. Owen McMillan", "Chris D. Jiggins"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.1002353.g003", "stats"=>{"downloads"=>2, "page_views"=>17, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Schematic_overview_of_the_dennis_region_alignment_architecture_/1638149", "title"=>"Schematic overview of the <i>dennis</i> region alignment architecture.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2016-01-28 12:55:02"}
• {"files"=>["https://ndownloader.figshare.com/files/2628267"], "description"=>"<p>(A) The phylogeny of species used in this study (left, from [<a href=\"http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1002353#pbio.1002353.ref014\" target=\"_blank\">14</a>]) and their respective combinations of <i>dennis</i> and <i>ray</i> haplotypes (right). Note that although genetic data for <i>Heliconius elevatus roraima</i> are not analysed here or included in our alignment, this taxon is shown for completeness. Representative butterfly phenotypes are shown with their respective subspecies or form names. <i>H</i>. <i>e</i>. <i>pseudocupidineus</i> is abbreviated to pseudoc. (B) ML trees with bootstraps (generated using de novo assembled genomes) show that the <i>dennis</i> alleles cluster with the silvaniform clade (left), whilst the <i>ray</i> alleles cluster with the melpomene/timareta clade (right). Terminal nodes are coloured by silvaniform clade (green, except <i>H</i>. <i>elevatus</i>), dennis/ray (red, <i>H</i>. <i>melpomene/timareta</i>; burgundy, <i>H</i>. <i>elevatus</i>), <i>melpomene/timareta</i> non-dennis/ray forms (blue), and <i>cydno/pachinus/heurippa</i> clade (purple). Outgroup species are in black (see also <a href=\"http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1002353#pbio.1002353.s002\" target=\"_blank\">S2 Fig</a> for sample labels). <i>H</i>. <i>m</i>. <i>meriana</i> and <i>H</i>. <i>t</i>. <i>timareta</i> f. <i>contigua</i> have dennis-only and ray-only patterns, respectively, and cluster with their expected phenotypes. All trees were rooted to <i>H</i>. <i>aoede</i>. Bootstraps are given as percentages of 1,000 iterations.</p>", "links"=>[], "tags"=>["combination", "Butterfly Wing Pattern", "dennis phenotype introgressed", "module", "pattern variation", "Wing Pattern", "region", "Heliconius melpomene", "genome sequence data", "colour pattern elements", "evolutionary novelty", "Amazonian Heliconius butterflies", "Phylogenetic analysis", "ray introgressed", "Enhancer Shuffling", "adaptive radiation", "diversification", "17 species", "control expression", "Enhancer elements", "142 individuals", "novel adaptive", "recombination", "transcription factor optix"], "article_id"=>1638150, "categories"=>["Biological Sciences"], "users"=>["Richard W. R. Wallbank", "Simon W. Baxter", "Carolina Pardo-Diaz", "Joseph J. Hanly", "Simon H. Martin", "James Mallet", "Kanchon K. Dasmahapatra", "Camilo Salazar", "Mathieu Joron", "Nicola Nadeau", "W. Owen McMillan", "Chris D. Jiggins"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.1002353.g004", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Modularity_of_dennis_and_ray_and_phylogenetic_relationships_among_alleles_at_both_loci_/1638150", "title"=>"Modularity of <i>dennis</i> and <i>ray</i> and phylogenetic relationships among alleles at both loci.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2016-01-28 12:37:01"}
• {"files"=>["https://ndownloader.figshare.com/files/2628268"], "description"=>"<p>Key events indicated on the x-axis are (A) introgression of <i>dennis</i> from <i>H</i>. <i>elevatus</i> into <i>H</i>. <i>melpomene</i>, inferred from the coalescence time of alleles sampled from these two species; (B) the origin of <i>ray</i> alleles within <i>H</i>. <i>melpomene</i>, inferred from the coalescence of <i>dennis</i> and non-<i>dennis</i> alleles within <i>H</i>. <i>melpomene</i>; (C) introgression of <i>ray</i> into <i>H</i>. <i>timareta</i>; (D) introgression of ray into <i>H</i>. <i>elevatus</i>, and (E) introgression of <i>dennis</i> into <i>H</i>. <i>timareta</i>. Dating of phylogenies was carried out using BEAST, and full dated trees with support limits are provided in <a href=\"http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1002353#pbio.1002353.s003\" target=\"_blank\">S3 Fig</a>. The species tree is derived from [<a href=\"http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1002353#pbio.1002353.ref014\" target=\"_blank\">14</a>].</p>", "links"=>[], "tags"=>["combination", "Butterfly Wing Pattern", "dennis phenotype introgressed", "module", "pattern variation", "Wing Pattern", "region", "Heliconius melpomene", "genome sequence data", "colour pattern elements", "evolutionary novelty", "Amazonian Heliconius butterflies", "Phylogenetic analysis", "ray introgressed", "Enhancer Shuffling", "adaptive radiation", "diversification", "17 species", "control expression", "Enhancer elements", "142 individuals", "novel adaptive", "recombination", "transcription factor optix"], "article_id"=>1638151, "categories"=>["Biological Sciences"], "users"=>["Richard W. R. Wallbank", "Simon W. Baxter", "Carolina Pardo-Diaz", "Joseph J. Hanly", "Simon H. Martin", "James Mallet", "Kanchon K. Dasmahapatra", "Camilo Salazar", "Mathieu Joron", "Nicola Nadeau", "W. Owen McMillan", "Chris D. Jiggins"], "doi"=>"https://dx.doi.org/10.1371/journal.pbio.1002353.g005", "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Hypothesis_for_the_origins_and_introgression_of_the_dennis_and_ray_regions_inferred_from_dated_trees_/1638151", "title"=>"Hypothesis for the origins and introgression of the <i>dennis</i> and <i>ray</i> regions inferred from dated trees.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2016-01-28 12:37:00"}

PMC Usage Stats | Further Information

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• {"unique-ip"=>"12", "full-text"=>"13", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"2"}
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• {"unique-ip"=>"25", "full-text"=>"38", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"24", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2017", "month"=>"4"}
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• {"unique-ip"=>"8", "full-text"=>"9", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2017", "month"=>"8"}
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• {"unique-ip"=>"9", "full-text"=>"8", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"8"}
• {"unique-ip"=>"15", "full-text"=>"14", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"9"}
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• {"unique-ip"=>"10", "full-text"=>"12", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"11"}
• {"unique-ip"=>"17", "full-text"=>"16", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2018", "month"=>"12"}
• {"unique-ip"=>"10", "full-text"=>"14", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2019", "month"=>"2"}
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• {"unique-ip"=>"9", "full-text"=>"7", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"4"}
• {"unique-ip"=>"6", "full-text"=>"6", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"5"}
• {"unique-ip"=>"9", "full-text"=>"6", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"8"}
• {"unique-ip"=>"11", "full-text"=>"12", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"9"}
• {"unique-ip"=>"10", "full-text"=>"11", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"10"}

Relative Metric

{"start_date"=>"2016-01-01T00:00:00Z", "end_date"=>"2016-12-31T00:00:00Z", "subject_areas"=>[]}

F1000Prime