Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence
Publication Date
December 27, 2016
Authors
Camille Roux, Christelle Fraïsse, Jonathan Romiguier, Yoann Anciaux, et al
Volume
14
Issue
12
Pages
e2000234
DOI
https://dx.plos.org/10.1371/journal.pbio.2000234
Scopus
85009129525
Mendeley
http://www.mendeley.com/research/shedding-light-grey-zone-speciation-along-continuum-genomic-divergence
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{"title"=>"Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence", "type"=>"journal", "authors"=>[{"first_name"=>"Camille", "last_name"=>"Roux", "scopus_author_id"=>"56194954100"}, {"first_name"=>"Christelle", "last_name"=>"Fraïsse", "scopus_author_id"=>"56050151800"}, {"first_name"=>"Jonathan", "last_name"=>"Romiguier", "scopus_author_id"=>"36195949500"}, {"first_name"=>"Yoann", "last_name"=>"Anciaux", "scopus_author_id"=>"57192920480"}, {"first_name"=>"Nicolas", "last_name"=>"Galtier", "scopus_author_id"=>"7003941004"}, {"first_name"=>"Nicolas", "last_name"=>"Bierne", "scopus_author_id"=>"6603867007"}], "year"=>2016, "source"=>"PLoS Biology", "identifiers"=>{"arxiv"=>"http://dx.doi.org/10.1101/059790", "sgr"=>"85009129525", "pmid"=>"28027292", "pui"=>"613987252", "issn"=>"15457885", "isbn"=>"1044071060", "scopus"=>"2-s2.0-85009129525", "doi"=>"10.1371/journal.pbio.2000234"}, "id"=>"423b2f43-caa7-3df5-abe4-7fe3104acbf3", "abstract"=>"Speciation results from the progressive accumulation of mutations that decrease the\\r\\nprobability of mating between parental populations, or reduce the fitness of hybrids – the socalled\\r\\nspecies barriers. The speciation genomic literature, however, is mainly a collection of\\r\\ncase studies, each with its own approach and specificities, such that a global view of the\\r\\ngradual process of evolution from one to two species is currently lacking. Of primary\\r\\nimportance is the prevalence of gene flow between diverging entities, which is central in\\r\\nmost species concepts, and has been widely discussed in recent years. Here we explore the\\r\\ncontinuum of speciation thanks to a comparative analysis of genomic data from 61 pairs of\\r\\npopulations/species of animals with variable levels of divergence. Gene flow between\\r\\ndiverging gene pools is assessed under an Approximate Bayesian Computation (ABC)\\r\\nframework. We show that the intermediate, \"grey zone\" of speciation, in which taxonomy is\\r\\noften controversial, spans around one order of magnitude of net molecular divergence, from\\r\\n0.5% to 4%, irrespective of species life-history traits or ecology. Thanks to appropriate\\r\\nmodeling of among-loci variation in genetic drift and introgression rate, we clarify the status\\r\\nof the majority of ambiguous cases and uncover a number of cryptic species. Our framework\\r\\nalso allowed to reveal the high incidence in animals of semi-isolated species, when some but\\r\\nnot all loci are affected by barriers to gene flow, and highlights the intrinsic difficulty, both\\r\\nstatistical and conceptual, of delineating species in the grey zone of speciation", "link"=>"http://www.mendeley.com/research/shedding-light-grey-zone-speciation-along-continuum-genomic-divergence", "reader_count"=>205, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Professor > Associate Professor"=>4, "Researcher"=>43, "Student > Doctoral Student"=>8, "Student > Ph. D. Student"=>71, "Student > Postgraduate"=>9, "Student > Master"=>33, "Other"=>13, "Student > Bachelor"=>15, "Lecturer"=>2, "Professor"=>5}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Professor > Associate Professor"=>4, "Researcher"=>43, "Student > Doctoral Student"=>8, "Student > Ph. D. Student"=>71, "Student > Postgraduate"=>9, "Student > Master"=>33, "Other"=>13, "Student > Bachelor"=>15, "Lecturer"=>2, "Professor"=>5}, "reader_count_by_subject_area"=>{"Unspecified"=>3, "Environmental Science"=>10, "Biochemistry, Genetics and Molecular Biology"=>35, "Mathematics"=>1, "Agricultural and Biological Sciences"=>152, "Medicine and Dentistry"=>1, "Social Sciences"=>1, "Computer Science"=>1, "Immunology and Microbiology"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>1}, "Social Sciences"=>{"Social Sciences"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>152}, "Computer Science"=>{"Computer Science"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>35}, "Mathematics"=>{"Mathematics"=>1}, "Unspecified"=>{"Unspecified"=>3}, "Environmental Science"=>{"Environmental Science"=>10}}, "reader_count_by_country"=>{"Puerto Rico"=>1, "Netherlands"=>2, "United States"=>4, "Australia"=>1, "France"=>1, "Germany"=>4}, "group_count"=>5}

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