Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing
- Publication Date
- November 21, 2008
- Journal
- PLOS Genetics
- Authors
- Susan M. Huse, Les Dethlefsen, Julie A. Huber, David Mark Welch, et al
- Volume
- 4
- Issue
- 11
- Pages
- e1000255
- DOI
- https://dx.plos.org/10.1371/journal.pgen.1000255
- Publisher URL
- http://journals.plos.org/plosgenetics/article?id=10.1371%2Fjournal.pgen.1000255
- PubMed
- http://www.ncbi.nlm.nih.gov/pubmed/19023400
- PubMed Central
- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2577301
- Europe PMC
- http://europepmc.org/abstract/MED/19023400
- Web of Science
- 000261481000010
- Scopus
- 57149093416
- Mendeley
- http://www.mendeley.com/research/exploring-microbial-diversity-taxonomy-using-ssu-rrna-hypervariable-tag-sequencing
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CiteULike | Further Information
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Mendeley | Further Information
{"title"=>"Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing", "type"=>"journal", "authors"=>[{"first_name"=>"Susan M.", "last_name"=>"Huse", "scopus_author_id"=>"14063451900"}, {"first_name"=>"Les", "last_name"=>"Dethlefsen", "scopus_author_id"=>"55980640700"}, {"first_name"=>"Julie A.", "last_name"=>"Huber", "scopus_author_id"=>"8734097400"}, {"first_name"=>"David Mark", "last_name"=>"Welch", "scopus_author_id"=>"7202920994"}, {"first_name"=>"David A.", "last_name"=>"Relman", "scopus_author_id"=>"7006375689"}, {"first_name"=>"Mitchell L.", "last_name"=>"Sogin", "scopus_author_id"=>"7006791887"}], "year"=>2008, "source"=>"PLoS Genetics", "identifiers"=>{"sgr"=>"57149093416", "pmid"=>"19023400", "pui"=>"352773666", "isbn"=>"1553-7404 (Electronic)", "scopus"=>"2-s2.0-57149093416", "doi"=>"10.1371/journal.pgen.1000255", "issn"=>"15537390"}, "id"=>"e421102b-d15d-39ef-b948-a33ba2600d98", "abstract"=>"Massively parallel pyrosequencing of hypervariable regions from small subunit ribosomal RNA (SSU rRNA) genes can sample a microbial community two or three orders of magnitude more deeply per dollar and per hour than capillary sequencing of full-length SSU rRNA. As with full-length rRNA surveys, each sequence read is a tag surrogate for a single microbe. However, rather than assigning taxonomy by creating gene trees de novo that include all experimental sequences and certain reference taxa, we compare the hypervariable region tags to an extensive database of rRNA sequences and assign taxonomy based on the best match in a Global Alignment for Sequence Taxonomy (GAST) process. The resulting taxonomic census provides information on both composition and diversity of the microbial community. To determine the effectiveness of using only hypervariable region tags for assessing microbial community membership, we compared the taxonomy assigned to the V3 and V6 hypervariable regions with the taxonomy assigned to full-length SSU rRNA sequences isolated from both the human gut and a deep-sea hydrothermal vent. The hypervariable region tags and full-length rRNA sequences provided equivalent taxonomy and measures of relative abundance of microbial communities, even for tags up to 15% divergent from their nearest reference match. The greater sampling depth per dollar afforded by massively parallel pyrosequencing reveals many more members of the \"rare biosphere\" than does capillary sequencing of the full-length gene. In addition, tag sequencing eliminates cloning bias and the sequences are short enough to be completely sequenced in a single read, maximizing the number of organisms sampled in a run while minimizing chimera formation. This technique allows the cost-effective exploration of changes in microbial community structure, including the rare biosphere, over space and time and can be applied immediately to initiatives, such as the Human Microbiome Project.", "link"=>"http://www.mendeley.com/research/exploring-microbial-diversity-taxonomy-using-ssu-rrna-hypervariable-tag-sequencing", "reader_count"=>1109, "reader_count_by_academic_status"=>{"Unspecified"=>20, "Professor > Associate Professor"=>86, "Librarian"=>1, "Researcher"=>290, "Student > Doctoral Student"=>52, "Student > Ph. D. Student"=>319, "Student > Postgraduate"=>34, "Student > Master"=>137, "Other"=>23, "Student > Bachelor"=>84, "Lecturer"=>6, "Lecturer > Senior Lecturer"=>5, "Professor"=>50}, "reader_count_by_user_role"=>{"Unspecified"=>20, "Professor > Associate Professor"=>86, "Librarian"=>1, "Researcher"=>290, "Student > Doctoral Student"=>52, "Student > Ph. D. 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Scopus | Further Information
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Journal Comments | Further Information
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- {"id"=>"342808744398295040", "text"=>"@Dr_Bik @MicrobesRock Yes. It can use any database, it's just search & taxonomic assignment that works differently. http://t.co/cJzghxkNOz", "created_at"=>"2013-06-07T01:02:28Z", "user"=>"JulesDeep", "user_name"=>"Julie Huber", "user_profile_image"=>"http://a0.twimg.com/profile_images/232018656/IMG_4188_normal.jpg"}
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- {"month"=>"9", "year"=>"2011", "pdf_views"=>"133", "xml_views"=>"1", "html_views"=>"563"}
- {"month"=>"10", "year"=>"2011", "pdf_views"=>"130", "xml_views"=>"1", "html_views"=>"585"}
- {"month"=>"11", "year"=>"2011", "pdf_views"=>"144", "xml_views"=>"3", "html_views"=>"572"}
- {"month"=>"12", "year"=>"2011", "pdf_views"=>"102", "xml_views"=>"0", "html_views"=>"502"}
- {"month"=>"1", "year"=>"2012", "pdf_views"=>"111", "xml_views"=>"1", "html_views"=>"563"}
- {"month"=>"2", "year"=>"2012", "pdf_views"=>"134", "xml_views"=>"0", "html_views"=>"574"}
- {"month"=>"3", "year"=>"2012", "pdf_views"=>"140", "xml_views"=>"2", "html_views"=>"610"}
- {"month"=>"4", "year"=>"2012", "pdf_views"=>"101", "xml_views"=>"2", "html_views"=>"475"}
- {"month"=>"5", "year"=>"2012", "pdf_views"=>"110", "xml_views"=>"1", "html_views"=>"468"}
- {"month"=>"6", "year"=>"2012", "pdf_views"=>"66", "xml_views"=>"4", "html_views"=>"401"}
- {"month"=>"7", "year"=>"2012", "pdf_views"=>"82", "xml_views"=>"1", "html_views"=>"366"}
- {"month"=>"8", "year"=>"2012", "pdf_views"=>"81", "xml_views"=>"5", "html_views"=>"382"}
- {"month"=>"9", "year"=>"2012", "pdf_views"=>"97", "xml_views"=>"3", "html_views"=>"511"}
- {"month"=>"10", "year"=>"2012", "pdf_views"=>"111", "xml_views"=>"1", "html_views"=>"599"}
- {"month"=>"11", "year"=>"2012", "pdf_views"=>"102", "xml_views"=>"0", "html_views"=>"854"}
- {"month"=>"12", "year"=>"2012", "pdf_views"=>"70", "xml_views"=>"0", "html_views"=>"541"}
- {"month"=>"1", "year"=>"2013", "pdf_views"=>"85", "xml_views"=>"0", "html_views"=>"497"}
- {"month"=>"2", "year"=>"2013", "pdf_views"=>"63", "xml_views"=>"3", "html_views"=>"517"}
- {"month"=>"3", "year"=>"2013", "pdf_views"=>"82", "xml_views"=>"0", "html_views"=>"394"}
- {"month"=>"4", "year"=>"2013", "pdf_views"=>"56", "xml_views"=>"2", "html_views"=>"277"}
- {"month"=>"5", "year"=>"2013", "pdf_views"=>"47", "xml_views"=>"3", "html_views"=>"323"}
- {"month"=>"6", "year"=>"2013", "pdf_views"=>"55", "xml_views"=>"1", "html_views"=>"282"}
- {"month"=>"7", "year"=>"2013", "pdf_views"=>"59", "xml_views"=>"1", "html_views"=>"283"}
- {"month"=>"8", "year"=>"2013", "pdf_views"=>"62", "xml_views"=>"2", "html_views"=>"257"}
- {"month"=>"9", "year"=>"2013", "pdf_views"=>"52", "xml_views"=>"2", "html_views"=>"323"}
- {"month"=>"10", "year"=>"2013", "pdf_views"=>"65", "xml_views"=>"1", "html_views"=>"434"}
- {"month"=>"11", "year"=>"2013", "pdf_views"=>"59", "xml_views"=>"3", "html_views"=>"445"}
- {"month"=>"12", "year"=>"2013", "pdf_views"=>"48", "xml_views"=>"0", "html_views"=>"301"}
- {"month"=>"1", "year"=>"2014", "pdf_views"=>"42", "xml_views"=>"1", "html_views"=>"239"}
- {"month"=>"2", "year"=>"2014", "pdf_views"=>"50", "xml_views"=>"3", "html_views"=>"319"}
- {"month"=>"3", "year"=>"2014", "pdf_views"=>"58", "xml_views"=>"2", "html_views"=>"350"}
- {"month"=>"4", "year"=>"2014", "pdf_views"=>"39", "xml_views"=>"1", "html_views"=>"361"}
- {"month"=>"5", "year"=>"2014", "pdf_views"=>"46", "xml_views"=>"2", "html_views"=>"380"}
- {"month"=>"6", "year"=>"2014", "pdf_views"=>"56", "xml_views"=>"0", "html_views"=>"511"}
- {"month"=>"7", "year"=>"2014", "pdf_views"=>"53", "xml_views"=>"1", "html_views"=>"367"}
- {"month"=>"8", "year"=>"2014", "pdf_views"=>"51", "xml_views"=>"4", "html_views"=>"322"}
- {"month"=>"9", "year"=>"2014", "pdf_views"=>"47", "xml_views"=>"0", "html_views"=>"485"}
- {"month"=>"10", "year"=>"2014", "pdf_views"=>"39", "xml_views"=>"4", "html_views"=>"576"}
- {"month"=>"11", "year"=>"2014", "pdf_views"=>"41", "xml_views"=>"3", "html_views"=>"514"}
- {"month"=>"12", "year"=>"2014", "pdf_views"=>"25", "xml_views"=>"2", "html_views"=>"319"}
- {"month"=>"1", "year"=>"2015", "pdf_views"=>"37", "xml_views"=>"0", "html_views"=>"254"}
- {"month"=>"2", "year"=>"2015", "pdf_views"=>"40", "xml_views"=>"0", "html_views"=>"250"}
- {"month"=>"3", "year"=>"2015", "pdf_views"=>"25", "xml_views"=>"0", "html_views"=>"257"}
- {"month"=>"4", "year"=>"2015", "pdf_views"=>"36", "xml_views"=>"0", "html_views"=>"259"}
- {"month"=>"5", "year"=>"2015", "pdf_views"=>"36", "xml_views"=>"1", "html_views"=>"233"}
- {"month"=>"6", "year"=>"2015", "pdf_views"=>"60", "xml_views"=>"0", "html_views"=>"203"}
- {"month"=>"7", "year"=>"2015", "pdf_views"=>"22", "xml_views"=>"0", "html_views"=>"204"}
- {"month"=>"8", "year"=>"2015", "pdf_views"=>"29", "xml_views"=>"0", "html_views"=>"169"}
- {"month"=>"9", "year"=>"2015", "pdf_views"=>"24", "xml_views"=>"0", "html_views"=>"219"}
- {"month"=>"10", "year"=>"2015", "pdf_views"=>"39", "xml_views"=>"0", "html_views"=>"486"}
- {"month"=>"11", "year"=>"2015", "pdf_views"=>"31", "xml_views"=>"0", "html_views"=>"243"}
- {"month"=>"12", "year"=>"2015", "pdf_views"=>"28", "xml_views"=>"0", "html_views"=>"220"}
- {"month"=>"1", "year"=>"2016", "pdf_views"=>"49", "xml_views"=>"0", "html_views"=>"167"}
- {"month"=>"2", "year"=>"2016", "pdf_views"=>"45", "xml_views"=>"0", "html_views"=>"193"}
- {"month"=>"3", "year"=>"2016", "pdf_views"=>"48", "xml_views"=>"0", "html_views"=>"194"}
- {"month"=>"4", "year"=>"2016", "pdf_views"=>"29", "xml_views"=>"0", "html_views"=>"177"}
- {"month"=>"5", "year"=>"2016", "pdf_views"=>"24", "xml_views"=>"0", "html_views"=>"156"}
- {"month"=>"6", "year"=>"2016", "pdf_views"=>"45", "xml_views"=>"0", "html_views"=>"205"}
- {"month"=>"7", "year"=>"2016", "pdf_views"=>"28", "xml_views"=>"0", "html_views"=>"178"}
- {"month"=>"8", "year"=>"2016", "pdf_views"=>"34", "xml_views"=>"0", "html_views"=>"215"}
- {"month"=>"9", "year"=>"2016", "pdf_views"=>"57", "xml_views"=>"0", "html_views"=>"221"}
- {"month"=>"10", "year"=>"2016", "pdf_views"=>"27", "xml_views"=>"0", "html_views"=>"206"}
- {"month"=>"11", "year"=>"2016", "pdf_views"=>"8", "xml_views"=>"0", "html_views"=>"316"}
- {"month"=>"12", "year"=>"2016", "pdf_views"=>"36", "xml_views"=>"0", "html_views"=>"322"}
- {"month"=>"1", "year"=>"2017", "pdf_views"=>"33", "xml_views"=>"3", "html_views"=>"163"}
- {"month"=>"2", "year"=>"2017", "pdf_views"=>"21", "xml_views"=>"1", "html_views"=>"161"}
- {"month"=>"3", "year"=>"2017", "pdf_views"=>"33", "xml_views"=>"1", "html_views"=>"181"}
- {"month"=>"4", "year"=>"2017", "pdf_views"=>"29", "xml_views"=>"0", "html_views"=>"173"}
- {"month"=>"5", "year"=>"2017", "pdf_views"=>"41", "xml_views"=>"1", "html_views"=>"164"}
- {"month"=>"6", "year"=>"2017", "pdf_views"=>"25", "xml_views"=>"1", "html_views"=>"128"}
- {"month"=>"7", "year"=>"2017", "pdf_views"=>"23", "xml_views"=>"1", "html_views"=>"140"}
- {"month"=>"8", "year"=>"2017", "pdf_views"=>"38", "xml_views"=>"4", "html_views"=>"129"}
- {"month"=>"9", "year"=>"2017", "pdf_views"=>"21", "xml_views"=>"2", "html_views"=>"134"}
- {"month"=>"10", "year"=>"2017", "pdf_views"=>"26", "xml_views"=>"2", "html_views"=>"147"}
- {"month"=>"11", "year"=>"2017", "pdf_views"=>"28", "xml_views"=>"1", "html_views"=>"190"}
- {"month"=>"12", "year"=>"2017", "pdf_views"=>"32", "xml_views"=>"1", "html_views"=>"140"}
- {"month"=>"1", "year"=>"2018", "pdf_views"=>"29", "xml_views"=>"0", "html_views"=>"100"}
- {"month"=>"2", "year"=>"2018", "pdf_views"=>"25", "xml_views"=>"1", "html_views"=>"56"}
- {"month"=>"3", "year"=>"2018", "pdf_views"=>"46", "xml_views"=>"3", "html_views"=>"72"}
- {"month"=>"4", "year"=>"2018", "pdf_views"=>"38", "xml_views"=>"0", "html_views"=>"82"}
- {"month"=>"5", "year"=>"2018", "pdf_views"=>"38", "xml_views"=>"2", "html_views"=>"51"}
- {"month"=>"6", "year"=>"2018", "pdf_views"=>"20", "xml_views"=>"1", "html_views"=>"68"}
- {"month"=>"7", "year"=>"2018", "pdf_views"=>"26", "xml_views"=>"3", "html_views"=>"45"}
- {"month"=>"8", "year"=>"2018", "pdf_views"=>"14", "xml_views"=>"1", "html_views"=>"62"}
- {"month"=>"9", "year"=>"2018", "pdf_views"=>"35", "xml_views"=>"0", "html_views"=>"76"}
- {"month"=>"10", "year"=>"2018", "pdf_views"=>"35", "xml_views"=>"1", "html_views"=>"68"}
- {"month"=>"11", "year"=>"2018", "pdf_views"=>"43", "xml_views"=>"0", "html_views"=>"61"}
- {"month"=>"12", "year"=>"2018", "pdf_views"=>"24", "xml_views"=>"0", "html_views"=>"63"}
- {"month"=>"1", "year"=>"2019", "pdf_views"=>"39", "xml_views"=>"0", "html_views"=>"75"}
- {"month"=>"2", "year"=>"2019", "pdf_views"=>"34", "xml_views"=>"0", "html_views"=>"76"}
- {"month"=>"3", "year"=>"2019", "pdf_views"=>"32", "xml_views"=>"1", "html_views"=>"84"}
- {"month"=>"4", "year"=>"2019", "pdf_views"=>"33", "xml_views"=>"1", "html_views"=>"60"}
- {"month"=>"5", "year"=>"2019", "pdf_views"=>"23", "xml_views"=>"0", "html_views"=>"47"}
- {"month"=>"6", "year"=>"2019", "pdf_views"=>"12", "xml_views"=>"0", "html_views"=>"47"}
- {"month"=>"7", "year"=>"2019", "pdf_views"=>"25", "xml_views"=>"0", "html_views"=>"41"}
- {"month"=>"8", "year"=>"2019", "pdf_views"=>"45", "xml_views"=>"1", "html_views"=>"59"}
- {"month"=>"9", "year"=>"2019", "pdf_views"=>"35", "xml_views"=>"1", "html_views"=>"47"}
- {"month"=>"10", "year"=>"2019", "pdf_views"=>"33", "xml_views"=>"1", "html_views"=>"58"}
- {"month"=>"11", "year"=>"2019", "pdf_views"=>"34", "xml_views"=>"0", "html_views"=>"64"}
- {"month"=>"12", "year"=>"2019", "pdf_views"=>"31", "xml_views"=>"0", "html_views"=>"52"}
- {"month"=>"1", "year"=>"2020", "pdf_views"=>"86", "xml_views"=>"0", "html_views"=>"68"}
- {"month"=>"2", "year"=>"2020", "pdf_views"=>"46", "xml_views"=>"1", "html_views"=>"37"}
- {"month"=>"3", "year"=>"2020", "pdf_views"=>"43", "xml_views"=>"0", "html_views"=>"20"}
- {"month"=>"4", "year"=>"2020", "pdf_views"=>"91", "xml_views"=>"0", "html_views"=>"39"}
- {"month"=>"5", "year"=>"2020", "pdf_views"=>"77", "xml_views"=>"0", "html_views"=>"26"}
- {"month"=>"6", "year"=>"2020", "pdf_views"=>"30", "xml_views"=>"0", "html_views"=>"38"}
- {"month"=>"7", "year"=>"2020", "pdf_views"=>"41", "xml_views"=>"0", "html_views"=>"50"}
- {"month"=>"8", "year"=>"2020", "pdf_views"=>"27", "xml_views"=>"0", "html_views"=>"58"}
- {"month"=>"9", "year"=>"2020", "pdf_views"=>"38", "xml_views"=>"2", "html_views"=>"54"}
- {"month"=>"10", "year"=>"2020", "pdf_views"=>"60", "xml_views"=>"1", "html_views"=>"44"}
- {"month"=>"11", "year"=>"2020", "pdf_views"=>"45", "xml_views"=>"1", "html_views"=>"50"}
- {"month"=>"12", "year"=>"2020", "pdf_views"=>"49", "xml_views"=>"8", "html_views"=>"38"}
- {"month"=>"1", "year"=>"2021", "pdf_views"=>"19", "xml_views"=>"0", "html_views"=>"26"}
PMC Usage Stats | Further Information
- {"month"=>"1", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"117", "year"=>"2010", "pdf"=>"64", "unique-ip"=>"105", "figure"=>"8", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"2", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"110", "unique-ip"=>"98", "pdf"=>"51", "year"=>"2010", "figure"=>"5", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"3", "scanned-page-browse"=>"0", "cited-by"=>"4", "abstract"=>"5", "full-text"=>"154", "year"=>"2010", "pdf"=>"73", "unique-ip"=>"105", "figure"=>"7", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"4", "cited-by"=>"1", "abstract"=>"2", "full-text"=>"105", "unique-ip"=>"93", "pdf"=>"54", "year"=>"2010", "figure"=>"15", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"5", "scanned-page-browse"=>"0", "cited-by"=>"1", "abstract"=>"4", "full-text"=>"61", "year"=>"2010", "pdf"=>"41", "unique-ip"=>"75", "figure"=>"5", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"6", "cited-by"=>"1", "abstract"=>"0", "full-text"=>"78", "unique-ip"=>"77", "pdf"=>"48", "year"=>"2010", "figure"=>"6", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"7", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"61", "year"=>"2010", "pdf"=>"32", "unique-ip"=>"51", "figure"=>"4", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"8", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"63", "unique-ip"=>"60", "pdf"=>"39", "year"=>"2010", "figure"=>"11", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"9", "scanned-page-browse"=>"0", "cited-by"=>"1", "abstract"=>"1", "full-text"=>"108", "year"=>"2010", "pdf"=>"41", "unique-ip"=>"70", "figure"=>"12", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"10", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"45", "unique-ip"=>"44", "pdf"=>"43", "year"=>"2010", "figure"=>"0", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"11", "scanned-page-browse"=>"0", "cited-by"=>"1", "abstract"=>"1", "full-text"=>"42", "year"=>"2010", "pdf"=>"30", "unique-ip"=>"52", "figure"=>"15", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"12", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"31", "unique-ip"=>"38", "pdf"=>"22", "year"=>"2010", "figure"=>"4", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"1", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"39", "year"=>"2011", "pdf"=>"30", "unique-ip"=>"42", "figure"=>"7", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"2", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"40", "unique-ip"=>"43", "pdf"=>"23", "year"=>"2011", "figure"=>"5", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"3", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"39", "year"=>"2011", "pdf"=>"26", "unique-ip"=>"48", "figure"=>"10", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"4", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"32", "unique-ip"=>"40", "pdf"=>"23", "year"=>"2011", "figure"=>"11", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"5", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"3", "full-text"=>"32", "year"=>"2011", "pdf"=>"19", "unique-ip"=>"38", "figure"=>"3", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"6", "cited-by"=>"3", "abstract"=>"2", "full-text"=>"39", "unique-ip"=>"39", "pdf"=>"24", "year"=>"2011", "figure"=>"10", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"7", "scanned-page-browse"=>"0", "cited-by"=>"1", "abstract"=>"1", "full-text"=>"31", "year"=>"2011", "pdf"=>"16", "unique-ip"=>"31", "figure"=>"0", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"8", "cited-by"=>"1", "abstract"=>"1", "full-text"=>"36", "unique-ip"=>"36", "pdf"=>"14", "year"=>"2011", "figure"=>"5", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"9", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"67", "year"=>"2011", "pdf"=>"22", "unique-ip"=>"41", "figure"=>"0", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"10", "cited-by"=>"0", "abstract"=>"0", "full-text"=>"60", "unique-ip"=>"47", "pdf"=>"25", "year"=>"2011", "figure"=>"3", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"11", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"3", "full-text"=>"37", "year"=>"2011", "pdf"=>"16", "unique-ip"=>"36", "figure"=>"4", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"12", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"24", "unique-ip"=>"23", "pdf"=>"11", "year"=>"2011", "figure"=>"4", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"1", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"23", "unique-ip"=>"26", "pdf"=>"14", "year"=>"2012", "figure"=>"3", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"2", "scanned-page-browse"=>"0", "cited-by"=>"0", "abstract"=>"1", "full-text"=>"35", "year"=>"2012", "pdf"=>"19", "unique-ip"=>"37", "figure"=>"4", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"3", "cited-by"=>"0", "abstract"=>"2", "full-text"=>"34", "unique-ip"=>"31", "pdf"=>"15", "year"=>"2012", "figure"=>"0", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"month"=>"4", "scanned-page-browse"=>"0", "cited-by"=>"1", "abstract"=>"0", "full-text"=>"19", "year"=>"2012", "pdf"=>"8", "unique-ip"=>"20", "figure"=>"0", "scanned-summary"=>"0", "supp-data"=>"0"}
- {"scanned-page-browse"=>"0", "month"=>"5", "cited-by"=>"1", "abstract"=>"2", "full-text"=>"29", "unique-ip"=>"32", "pdf"=>"17", "year"=>"2012", "figure"=>"6", "scanned-summary"=>"0", "supp-data"=>"0"}
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Relative Metric
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Net::HTTPBadRequest
Source
CrossRefTime
2020-08-26 04:19:02 UTCTarget URL
http://doi.crossref.org/servlet/getForwardLinks?usr=plos&pwd=Sp5BS5-wNH6_jJ&doi=10.1371%2Fjournal.pgen.1000255Trace
/app/models/concerns/networkable.rb:21:in `get_result'
/app/models/source.rb:165:in `get_data'
/app/models/retrieval_status.rb:47:in `perform_get_data'
/app/jobs/source_job.rb:52:in `block (2 levels) in perform'
/app/jobs/source_job.rb:51:in `block in perform'
/app/jobs/source_job.rb:35:in `each'
/app/jobs/source_job.rb:35:in `perform'