The Druze: A Population Genetic Refugium of the Near East
Publication Date
May 07, 2008
Journal
PLOS ONE
Authors
Liran I. Shlush, Doron M. Behar, Guennady Yudkovsky, Alan Templeton, et al
Volume
3
Issue
5
Pages
e2105
DOI
https://dx.plos.org/10.1371/journal.pone.0002105
Publisher URL
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0002105
PubMed
http://www.ncbi.nlm.nih.gov/pubmed/18461126
PubMed Central
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2324201
Europe PMC
http://europepmc.org/abstract/MED/18461126
Web of Science
000261642400027
Scopus
47749093953
Mendeley
http://www.mendeley.com/research/druze-population-genetic-refugium-near-east
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Mendeley | Further Information

{"title"=>"The druze: A population genetic refugium of the Near East", "type"=>"journal", "authors"=>[{"first_name"=>"Liran I.", "last_name"=>"Shlush", "scopus_author_id"=>"23993337300"}, {"first_name"=>"Doron M.", "last_name"=>"Behar", "scopus_author_id"=>"7005936911"}, {"first_name"=>"Guennady", "last_name"=>"Yudkovsky", "scopus_author_id"=>"6506054228"}, {"first_name"=>"Alan", "last_name"=>"Templeton", "scopus_author_id"=>"7201988811"}, {"first_name"=>"Yarin", "last_name"=>"Hadid", "scopus_author_id"=>"12647525500"}, {"first_name"=>"Fuad", "last_name"=>"Basis", "scopus_author_id"=>"24728998800"}, {"first_name"=>"Michael", "last_name"=>"Hammer", "scopus_author_id"=>"7103177762"}, {"first_name"=>"Shalev", "last_name"=>"Itzkovitz", "scopus_author_id"=>"6603160576"}, {"first_name"=>"Karl", "last_name"=>"Skorecki", "scopus_author_id"=>"7005716205"}], "year"=>2008, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "scopus"=>"2-s2.0-47749093953", "sgr"=>"47749093953", "pui"=>"352025093", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pmid"=>"18461126", "doi"=>"10.1371/journal.pone.0002105"}, "id"=>"aec29c06-ca35-352d-8d23-a402c3ed299d", "abstract"=>"BACKGROUND: Phylogenetic mitochondrial DNA haplogroups are highly partitioned across global geographic regions. A unique exception is the X haplogroup, which has a widespread global distribution without major regions of distinct localization.\\n\\nPRINCIPAL FINDINGS: We have examined mitochondrial DNA sequence variation together with Y-chromosome-based haplogroup structure among the Druze, a religious minority with a unique socio-demographic history residing in the Near East. We observed a striking overall pattern of heterogeneous parental origins, consistent with Druze oral tradition, together with both a high frequency and a high diversity of the mitochondrial DNA (mtDNA) X haplogroup within a confined regional subpopulation. Furthermore demographic modeling indicated low migration rates with nearby populations.\\n\\nCONCLUSIONS: These findings were enabled through the use of a paternal kindred based sampling approach, and suggest that the Galilee Druze represent a population isolate, and that the combination of a high frequency and diversity of the mtDNA X haplogroup signifies a phylogenetic refugium, providing a sample snapshot of the genetic landscape of the Near East prior to the modern age.", "link"=>"http://www.mendeley.com/research/druze-population-genetic-refugium-near-east", "reader_count"=>51, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>3, "Researcher"=>11, "Student > Doctoral Student"=>3, "Student > Ph. D. Student"=>13, "Student > Postgraduate"=>2, "Student > Master"=>8, "Other"=>1, "Student > Bachelor"=>5, "Lecturer > Senior Lecturer"=>1, "Professor"=>4}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>3, "Researcher"=>11, "Student > Doctoral Student"=>3, "Student > Ph. D. Student"=>13, "Student > Postgraduate"=>2, "Student > Master"=>8, "Other"=>1, "Student > Bachelor"=>5, "Lecturer > Senior Lecturer"=>1, "Professor"=>4}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Biochemistry, Genetics and Molecular Biology"=>2, "Agricultural and Biological Sciences"=>35, "Medicine and Dentistry"=>7, "Arts and Humanities"=>2, "Physics and Astronomy"=>1, "Chemistry"=>1, "Social Sciences"=>1, "Linguistics"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>7}, "Chemistry"=>{"Chemistry"=>1}, "Social Sciences"=>{"Social Sciences"=>1}, "Physics and Astronomy"=>{"Physics and Astronomy"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>35}, "Linguistics"=>{"Linguistics"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>2}, "Unspecified"=>{"Unspecified"=>1}, "Arts and Humanities"=>{"Arts and Humanities"=>2}}, "reader_count_by_country"=>{"Austria"=>1, "United States"=>3, "Israel"=>1, "Australia"=>1}, "group_count"=>1}

Scopus | Further Information

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/459568", "https://ndownloader.figshare.com/files/459625", "https://ndownloader.figshare.com/files/459785", "https://ndownloader.figshare.com/files/459833", "https://ndownloader.figshare.com/files/459880", "https://ndownloader.figshare.com/files/459915", "https://ndownloader.figshare.com/files/459947", "https://ndownloader.figshare.com/files/459982"], "description"=>"<div><h3>Background</h3><p>Phylogenetic mitochondrial DNA haplogroups are highly partitioned across global geographic regions. A unique exception is the X haplogroup, which has a widespread global distribution without major regions of distinct localization.</p><h3>Principal Findings</h3><p>We have examined mitochondrial DNA sequence variation together with Y-chromosome-based haplogroup structure among the Druze, a religious minority with a unique socio-demographic history residing in the Near East. We observed a striking overall pattern of heterogeneous parental origins, consistent with Druze oral tradition, together with both a high frequency and a high diversity of the mitochondrial DNA (mtDNA) X haplogroup within a confined regional subpopulation. Furthermore demographic modeling indicated low migration rates with nearby populations.</p><h3>Conclusions</h3><p>These findings were enabled through the use of a paternal kindred based sampling approach, and suggest that the Galilee Druze represent a population isolate, and that the combination of a high frequency and diversity of the mtDNA X haplogroup signifies a phylogenetic refugium, providing a sample snapshot of the genetic landscape of the Near East prior to the modern age.</p></div>", "links"=>[], "tags"=>["refugium"], "article_id"=>150554, "categories"=>["Genetics"], "users"=>["Liran I. Shlush", "Doron M. Behar", "Guennady Yudkovsky", "Alan Templeton", "Yarin Hadid", "Fuad Basis", "Michael Hammer", "Shalev Itzkovitz", "Karl Skorecki"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0002105.s001", "https://dx.doi.org/10.1371/journal.pone.0002105.s002", "https://dx.doi.org/10.1371/journal.pone.0002105.s003", "https://dx.doi.org/10.1371/journal.pone.0002105.s004", "https://dx.doi.org/10.1371/journal.pone.0002105.s005", "https://dx.doi.org/10.1371/journal.pone.0002105.s006", "https://dx.doi.org/10.1371/journal.pone.0002105.s007", "https://dx.doi.org/10.1371/journal.pone.0002105.s008"], "stats"=>{"downloads"=>48, "page_views"=>37, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/The_Druze_A_Population_Genetic_Refugium_of_the_Near_East/150554", "title"=>"The Druze: A Population Genetic Refugium of the Near East", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2008-05-07 00:09:14"}
  • {"files"=>["https://ndownloader.figshare.com/files/931732"], "description"=>"*<p> = lineages that were not defined under the current known mtDNA tree topology.</p>", "links"=>[], "tags"=>["druze", "haplogroup", "defined", "d-loop", "mtdna"], "article_id"=>602166, "categories"=>["Genetics"], "users"=>["Liran I. Shlush", "Doron M. Behar", "Guennady Yudkovsky", "Alan Templeton", "Yarin Hadid", "Fuad Basis", "Michael Hammer", "Shalev Itzkovitz", "Karl Skorecki"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002105.t002", "stats"=>{"downloads"=>1, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Haplotype_diversity_among_Druze_Haplogroup_K_and_H_as_defined_by_D_Loop_and_Full_mtDNA_sequence_/602166", "title"=>"Haplotype diversity among Druze Haplogroup K and H as defined by D-Loop and Full mtDNA sequence.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2008-05-07 00:36:06"}
  • {"files"=>["https://ndownloader.figshare.com/files/931661"], "description"=>"<p>Demographic modeling using the IM application<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002105#pone.0002105-Hey1\" target=\"_blank\">[40]</a> applied to mtDNA HVS-I sequences (nucleotides 16067–16384) from various Near East populations. Red bars = Druze with other Near East populations. Purple bars = Near East populations among themselves. Migration rates represent the mode of the posterior distribution of the number of migrants per generation. The divergence time is in thousand of years. The following populations were used: 311 Druze from the current study. Sequences reported in Macaulay et al <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002105#pone.0002105-Macaulay1\" target=\"_blank\">[7]</a>: Egyptians (Egypt) 67 samples; Iraqis (Iraq) 116 samples; Syrians (Syria) 69 samples; Palestinians (Pales) 110 samples; Turks (Turk) 218 samples; Armenians (Armenian) 191 samples; Adygei (Adyg) 50 samples; Greeks (Greece) 65 samples; Swedes (Swe) 32 samples; Nowegians (Nor) 231 samples; Basques (Basq) 156 samples. Sequences reported by Hammer et.al <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002105#pone.0002105-Hammer2\" target=\"_blank\">[53]</a>: Bedouins (Bedouin) 58 samples. Sequences reported by Metspalu et.al <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002105#pone.0002105-Metspalu1\" target=\"_blank\">[54]</a>: Iranian (Iran) 436 samples. Sequences reported by Thomas et.al <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002105#pone.0002105-Thomas1\" target=\"_blank\">[55]</a>:Ashkenazi Jews (Ashkenazi) 78 samples Ethiopians (Ethiop) 74 samples.</p>", "links"=>[], "tags"=>["rates", "divergence", "times"], "article_id"=>602101, "categories"=>["Genetics"], "users"=>["Liran I. Shlush", "Doron M. Behar", "Guennady Yudkovsky", "Alan Templeton", "Yarin Hadid", "Fuad Basis", "Michael Hammer", "Shalev Itzkovitz", "Karl Skorecki"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002105.g002", "stats"=>{"downloads"=>1, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Migration_Rates_and_Population_Divergence_Times_among_Near_East_Populations_/602101", "title"=>"Migration Rates and Population Divergence Times among Near East Populations.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-05-07 00:35:01"}
  • {"files"=>["https://ndownloader.figshare.com/files/931555"], "description"=>"<p><a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002105#pone-0002105-g001\" target=\"_blank\">Figure 1A:</a> Median-joining (MJ) network of the 41× haplogroup samples. The MJ<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002105#pone.0002105-Bandelt1\" target=\"_blank\">[51]</a> algorithm was implemented within the Network 4112 program. Areas of the colored nodes are proportional to haplotype frequencies. Each different color represents a different lineage. Nomenclature of node name: the first three characters of each node indicate the X haplogroup haplotype nomenclature according to Reidla et.al<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002105#pone.0002105-Reidla1\" target=\"_blank\">[4]</a>. Asterisks designate samples whose genotype does not match any of the currently designated subhaplogroups. The fourth character defines the Druze Galilee village in which the haplotype was the most prevalent, according to maternal ancestry. B = Beit Jaan; H = Hurfeish; J = Julis; L = Lebanon; P = Peq'in; S = Sajur; Y = Yirka. The fifth character indicates the haplotype serial number. CRS = the Cambridge Reference Sequence. Nucleotide changes are specified by suffixes only for transversions; insertions and deletions are not designated. <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002105#pone-0002105-g001\" target=\"_blank\">Figure 1B:</a> The geographic distribution of the various Druze X haplogroup lineages in the Galilee region. Node names and colors are identical to those in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002105#pone-0002105-g001\" target=\"_blank\">figure 1A</a>.</p>", "links"=>[], "tags"=>["galilee"], "article_id"=>601998, "categories"=>["Genetics"], "users"=>["Liran I. Shlush", "Doron M. Behar", "Guennady Yudkovsky", "Alan Templeton", "Yarin Hadid", "Fuad Basis", "Michael Hammer", "Shalev Itzkovitz", "Karl Skorecki"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002105.g001", "stats"=>{"downloads"=>3, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Haplogroup_X_in_Galilee_Druze_/601998", "title"=>"Haplogroup X in Galilee Druze.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2008-05-07 00:33:18"}
  • {"files"=>["https://ndownloader.figshare.com/files/931772"], "description"=>"<p>a = current study; b = Macaulay database; c = genetic diversity<a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002105#pone.0002105-Nei1\" target=\"_blank\">[11]</a> according to HVS-I 16090–16365; d = genetic diversity according to full mitochondrial sequence.</p>", "links"=>[], "tags"=>["druze", "samples", "compared", "macaulay", "et"], "article_id"=>602207, "categories"=>["Genetics"], "users"=>["Liran I. Shlush", "Doron M. Behar", "Guennady Yudkovsky", "Alan Templeton", "Yarin Hadid", "Fuad Basis", "Michael Hammer", "Shalev Itzkovitz", "Karl Skorecki"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0002105.t001", "stats"=>{"downloads"=>1, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Haplogroup_X_Frequency_and_Genetic_Diversity_in_Druze_samples_of_the_Current_Study_Compared_with_Macaulay_et_al_7_/602207", "title"=>"Haplogroup X Frequency and Genetic Diversity in Druze samples of the Current Study, Compared with Macaulay et al[7].", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2008-05-07 00:36:47"}

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Relative Metric

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