Detection of Human Rhinovirus C Viral Genome in Blood among Children with Severe Respiratory Infections in the Philippines
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{"title"=>"Detection of human rhinovirus C viral genome in blood among children with severe respiratory infections in the Philippines", "type"=>"journal", "authors"=>[{"first_name"=>"Naoko", "last_name"=>"Fuji", "scopus_author_id"=>"26434218300"}, {"first_name"=>"Akira", "last_name"=>"Suzuki", "scopus_author_id"=>"55711800300"}, {"first_name"=>"Socorro", "last_name"=>"Lupisan", "scopus_author_id"=>"57193984208"}, {"first_name"=>"Lydia", "last_name"=>"Sombrero", "scopus_author_id"=>"6602166391"}, {"first_name"=>"Hazel", "last_name"=>"Galang", "scopus_author_id"=>"36117558000"}, {"first_name"=>"Taro", "last_name"=>"Kamigaki", "scopus_author_id"=>"24376480900"}, {"first_name"=>"Raita", "last_name"=>"Tamaki", "scopus_author_id"=>"36784738300"}, {"first_name"=>"Mariko", "last_name"=>"Saito", "scopus_author_id"=>"55727972300"}, {"first_name"=>"Rapunzel", "last_name"=>"Aniceto", "scopus_author_id"=>"47761025700"}, {"first_name"=>"Remigio", "last_name"=>"Olveda", "scopus_author_id"=>"6701313494"}, {"first_name"=>"Hitoshi", "last_name"=>"Oshitani", "scopus_author_id"=>"35243518200"}], "year"=>2011, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"362882633", "isbn"=>"1932-6203", "issn"=>"19326203", "doi"=>"10.1371/journal.pone.0027247", "scopus"=>"2-s2.0-80555154308", "pmid"=>"22087272", "sgr"=>"80555154308"}, "id"=>"c28c9762-3123-3aa0-9cd3-c10e0318b4fd", "abstract"=>"Human rhinovirus (HRV) C was recently identified as the third species of HRV using a molecular technique. Infections caused by previously identified HRVs (A and B) are thought to be limited to the respiratory tract; however, pathogenesis of HRVC is still largely unknown. A total of 816 nasopharyngeal swabs from hospitalized children with severe respiratory infections in the Philippines (May 2008–May 2009) were tested for HRV by reverse transcription polymerase chain reaction (RT-PCR), and 243 samples (29.8%) were positive for HRV. Among these patients, serum samples were also tested to determine whether specific HRV species were associated with viremia. Only 30 serum samples (12.3%) were positive for HRV. However, the HRV positive rates were different among HRV species, 3% (4/135) for HRVA, 0% (0/25) for HRVB, and 31% (26/83) for HRVC, and were the highest on 2 days after the onset of symptoms. These results suggest that HRVC may have a different pathogenicity and can more commonly cause viremia than HRVA and HRVB. Serum positive rates for HRV are affected by age, i.e., higher positive rates for those aged 1 year or more. HRVC that were detected from serum exhibited the same level of sequence diversity as those positive only for nasopharyngeal samples in phylogenetic analysis. However, all HRVA which were detected from serum were clustered in a monophyletic clade based on their 5′ non-coding region (NCR) sequences, which is closely related with a certain HRVC genotype (A2) in 5′-NCR. This finding suggests that the 5′NCR region may be associated with viremia.", "link"=>"http://www.mendeley.com/research/detection-human-rhinovirus-c-viral-genome-blood-among-children-severe-respiratory-infections-philipp", "reader_count"=>29, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Professor > Associate Professor"=>3, "Researcher"=>5, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>9, "Student > Postgraduate"=>1, "Student > Master"=>6, "Other"=>1, "Student > Bachelor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Professor > Associate Professor"=>3, "Researcher"=>5, "Student > Doctoral Student"=>2, "Student > Ph. D. Student"=>9, "Student > Postgraduate"=>1, "Student > Master"=>6, "Other"=>1, "Student > Bachelor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>2, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>13, "Medicine and Dentistry"=>10, "Psychology"=>1, "Computer Science"=>1, "Immunology and Microbiology"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>10}, "Psychology"=>{"Psychology"=>1}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>13}, "Computer Science"=>{"Computer Science"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>2}}, "reader_count_by_country"=>{"United Kingdom"=>1, "Australia"=>1}, "group_count"=>0}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/714536"], "description"=>"<p>Black open circle indicates the HRVs detected only from nasopharyngeal swab samples. Filled red circle and triangle indicate S-1 and S-2 serum positives, respectively. Blue: HRVA, Yellow: HRVB, and Red: HRVC. Red branch indicates specific clade that is shared between HRVA and HRVC (A2). Phylogeny was inferred using NJ method on MEGA 4.1.</p>", "links"=>[], "tags"=>["Virology", "public health and epidemiology", "Infectious diseases", "pediatrics and child health"], "article_id"=>384874, "categories"=>["Medicine", "Infectious Diseases", "Virology", "Biotechnology"], "users"=>["Naoko Fuji", "Akira Suzuki", "Socorro Lupisan", "Lydia Sombrero", "Hazel Galang", "Taro Kamigaki", "Raita Tamaki", "Mariko Saito", "Rapunzel Aniceto", "Remigio Olveda", "Hitoshi Oshitani"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0027247.g001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_tree_of_5_8242_NCR_/384874", "title"=>"Phylogenetic tree of 5′NCR.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 11:51:13"}
  • {"files"=>["https://ndownloader.figshare.com/files/714666"], "description"=>"<p>Black open circle indicates the HRVs detected only from nasopharyngeal swab samples. Red circle indicates the HRVs detected from both nasopharyngeal swab and serum samples. Phylogeny was inferred using NJ method on MEGA 4.1.</p>", "links"=>[], "tags"=>["Virology", "public health and epidemiology", "Infectious diseases", "pediatrics and child health"], "article_id"=>385020, "categories"=>["Medicine", "Infectious Diseases", "Virology", "Biotechnology"], "users"=>["Naoko Fuji", "Akira Suzuki", "Socorro Lupisan", "Lydia Sombrero", "Hazel Galang", "Taro Kamigaki", "Raita Tamaki", "Mariko Saito", "Rapunzel Aniceto", "Remigio Olveda", "Hitoshi Oshitani"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0027247.g002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_tree_of_VP4_VP2_/385020", "title"=>"Phylogenetic tree of VP4-VP2.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 11:52:13"}
  • {"files"=>["https://ndownloader.figshare.com/files/714757"], "description"=>"<p>S-1 and S-2 indicate serum samples that were collected upon admission (S-1) and 3 days after admission (S-2). Date shown is the sampling date measured from onset of symptoms. Only PCR samples positive on S-1 were proceeded for the next analysis on S-2. The positivity rate was calculated with total (S-1+S-2) positive and negative numbers.</p>", "links"=>[], "tags"=>["rna", "detection", "serum", "rt-pcr", "days"], "article_id"=>385101, "categories"=>["Medicine", "Infectious Diseases", "Virology", "Biotechnology"], "users"=>["Naoko Fuji", "Akira Suzuki", "Socorro Lupisan", "Lydia Sombrero", "Hazel Galang", "Taro Kamigaki", "Raita Tamaki", "Mariko Saito", "Rapunzel Aniceto", "Remigio Olveda", "Hitoshi Oshitani"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0027247.g003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_HRV_RNA_detection_in_serum_by_RT_PCR_based_on_number_of_days_after_onset_/385101", "title"=>"HRV RNA detection in serum by RT-PCR based on number of days after onset.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 11:52:46"}
  • {"files"=>["https://ndownloader.figshare.com/files/714852"], "description"=>"<p>S+ and S− indicate RNA serum positivity and serum negativity, respectively. Bar indicates the range between maximum and minimum values. Thick bar indicates interquartile range. Median and outliers are shown as a lateral bar and asterisk, respectively. <sup>†</sup>p<0.05, <sup>† †</sup>p<0.01.</p>", "links"=>[], "tags"=>["groups", "hrv", "rna"], "article_id"=>385203, "categories"=>["Medicine", "Infectious Diseases", "Virology", "Biotechnology"], "users"=>["Naoko Fuji", "Akira Suzuki", "Socorro Lupisan", "Lydia Sombrero", "Hazel Galang", "Taro Kamigaki", "Raita Tamaki", "Mariko Saito", "Rapunzel Aniceto", "Remigio Olveda", "Hitoshi Oshitani"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0027247.g004"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_SpO2_by_age_groups_with_and_without_HRV_RNA_in_serum_/385203", "title"=>"SpO2 by age groups with and without HRV RNA in serum.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-02-20 11:53:17"}
  • {"files"=>["https://ndownloader.figshare.com/files/714928"], "description"=>"<p>OR is odds ratio calculated with each age groups and the rest of the groups within specie as the point of reference.</p>", "links"=>[], "tags"=>["rna", "positivity", "sera"], "article_id"=>385281, "categories"=>["Medicine", "Infectious Diseases", "Virology", "Biotechnology"], "users"=>["Naoko Fuji", "Akira Suzuki", "Socorro Lupisan", "Lydia Sombrero", "Hazel Galang", "Taro Kamigaki", "Raita Tamaki", "Mariko Saito", "Rapunzel Aniceto", "Remigio Olveda", "Hitoshi Oshitani"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0027247.t002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_HRV_RNA_positivity_in_sera_by_age_group_/385281", "title"=>"HRV RNA positivity in sera by age group.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 11:53:43"}
  • {"files"=>["https://ndownloader.figshare.com/files/714984"], "description"=>"<p>First serum samples were collected on the day of admission (S-1). Second serum samples were collected 3 days after admission (S-2). OR is the odds ratio calculated with each species and the rest of the groups as the point of reference.</p><p>*p<0.01,</p><p>**p = 0.05.</p>", "links"=>[], "tags"=>["rna", "positivity", "sera", "patients", "hrv", "nasopharyngeal"], "article_id"=>385327, "categories"=>["Medicine", "Infectious Diseases", "Virology", "Biotechnology"], "users"=>["Naoko Fuji", "Akira Suzuki", "Socorro Lupisan", "Lydia Sombrero", "Hazel Galang", "Taro Kamigaki", "Raita Tamaki", "Mariko Saito", "Rapunzel Aniceto", "Remigio Olveda", "Hitoshi Oshitani"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0027247.t001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_HRV_RNA_positivity_in_sera_among_patients_positive_for_HRV_in_nasopharyngeal_samples_/385327", "title"=>"HRV RNA positivity in sera among patients positive for HRV in nasopharyngeal samples.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-02-20 11:53:58"}

PMC Usage Stats | Further Information

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