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Mendeley | Further Information

{"title"=>"Synthetic biology: Mapping the Scientific landscape", "type"=>"journal", "authors"=>[{"first_name"=>"Paul", "last_name"=>"Oldham", "scopus_author_id"=>"26533255500"}, {"first_name"=>"Stephen", "last_name"=>"Hall", "scopus_author_id"=>"57197506685"}, {"first_name"=>"Geoff", "last_name"=>"Burton", "scopus_author_id"=>"55193420200"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"sgr"=>"84859954411", "doi"=>"10.1371/journal.pone.0034368", "pui"=>"364662462", "pmid"=>"22539946", "scopus"=>"2-s2.0-84859954411", "issn"=>"19326203", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)"}, "id"=>"dbbdba3f-48ac-3b6b-81e6-7c1439622442", "abstract"=>"This article uses data from Thomson Reuters Web of Science to map and analyse the scientific landscape for synthetic biology. The article draws on recent advances in data visualisation and analytics with the aim of informing upcoming international policy debates on the governance of synthetic biology by the Subsidiary Body on Scientific, Technical and Technological Advice (SBSTTA) of the United Nations Convention on Biological Diversity. We use mapping techniques to identify how synthetic biology can best be understood and the range of institutions, researchers and funding agencies involved. Debates under the Convention are likely to focus on a possible moratorium on the field release of synthetic organisms, cells or genomes. Based on the empirical evidence we propose that guidance could be provided to funding agencies to respect the letter and spirit of the Convention on Biological Diversity in making research investments. Building on the recommendations of the United States Presidential Commission for the Study of Bioethical Issues we demonstrate that it is possible to promote independent and transparent monitoring of developments in synthetic biology using modern information tools. In particular, public and policy understanding and engagement with synthetic biology can be enhanced through the use of online interactive tools. As a step forward in this process we make existing data on the scientific literature on synthetic biology available in an online interactive workbook so that researchers, policy makers and civil society can explore the data and draw conclusions for themselves.", "link"=>"http://www.mendeley.com/research/synthetic-biology-mapping-scientific-landscape", "reader_count"=>264, "reader_count_by_academic_status"=>{"Unspecified"=>4, "Professor > Associate Professor"=>9, "Librarian"=>2, "Researcher"=>74, "Student > Doctoral Student"=>8, "Student > Ph. D. Student"=>58, "Student > Postgraduate"=>15, "Student > Master"=>32, "Other"=>14, "Student > Bachelor"=>31, "Lecturer"=>3, "Professor"=>14}, "reader_count_by_user_role"=>{"Unspecified"=>4, "Professor > Associate Professor"=>9, "Librarian"=>2, "Researcher"=>74, "Student > Doctoral Student"=>8, "Student > Ph. D. Student"=>58, "Student > Postgraduate"=>15, "Student > Master"=>32, "Other"=>14, "Student > Bachelor"=>31, "Lecturer"=>3, "Professor"=>14}, "reader_count_by_subject_area"=>{"Unspecified"=>10, "Agricultural and Biological Sciences"=>130, "Philosophy"=>3, "Arts and Humanities"=>2, "Business, Management and Accounting"=>7, "Chemical Engineering"=>1, "Chemistry"=>7, "Computer Science"=>16, "Earth and Planetary Sciences"=>2, "Economics, Econometrics and Finance"=>5, "Engineering"=>15, "Environmental Science"=>5, "Biochemistry, Genetics and Molecular Biology"=>17, "Nursing and Health Professions"=>1, "Medicine and Dentistry"=>11, "Design"=>3, "Neuroscience"=>1, "Pharmacology, Toxicology and Pharmaceutical Science"=>1, "Sports and Recreations"=>1, "Physics and Astronomy"=>7, "Psychology"=>1, "Social Sciences"=>17, "Immunology and Microbiology"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>11}, "Social Sciences"=>{"Social Sciences"=>17}, "Sports and Recreations"=>{"Sports and Recreations"=>1}, "Physics and Astronomy"=>{"Physics and Astronomy"=>7}, "Psychology"=>{"Psychology"=>1}, "Unspecified"=>{"Unspecified"=>10}, "Environmental Science"=>{"Environmental Science"=>5}, "Pharmacology, Toxicology and Pharmaceutical Science"=>{"Pharmacology, Toxicology and Pharmaceutical Science"=>1}, "Chemical Engineering"=>{"Chemical Engineering"=>1}, "Arts and Humanities"=>{"Arts and Humanities"=>2}, "Design"=>{"Design"=>3}, "Engineering"=>{"Engineering"=>15}, "Chemistry"=>{"Chemistry"=>7}, "Neuroscience"=>{"Neuroscience"=>1}, "Earth and Planetary Sciences"=>{"Earth and Planetary Sciences"=>2}, "Economics, Econometrics and Finance"=>{"Economics, Econometrics and Finance"=>5}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>130}, "Computer Science"=>{"Computer Science"=>16}, "Business, Management and Accounting"=>{"Business, Management and Accounting"=>7}, "Nursing and Health Professions"=>{"Nursing and Health Professions"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>17}, "Philosophy"=>{"Philosophy"=>3}}, "reader_count_by_country"=>{"Colombia"=>1, "United States"=>12, "United Kingdom"=>6, "Switzerland"=>1, "Spain"=>1, "Russia"=>1, "Sweden"=>2, "Netherlands"=>1, "Austria"=>1, "Belgium"=>2, "Norway"=>1, "Luxembourg"=>1, "China"=>1, "Brazil"=>3, "Mexico"=>5, "Australia"=>2, "France"=>4, "Chile"=>1, "Germany"=>5}, "group_count"=>19}

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Journal Comments | Further Information

• {"type"=>"COMMENT", "annotationUri"=>"info:doi/10.1371/annotation/42b4244d-5071-411c-9dc1-313ea69d1310", "title"=>"here be dragons...", "body"=>"This is a very attractive study that, by itself, seems incredibly dangerous to use as a practical guide for what and why things are happening within local, national, and global synthetic biology research communities. \n\nFor example, some obvious papers seem absent, although they are listed in the citation database the authors use and include the relevant stated keywords. As a quick self-example, my research group has two papers in this article's top 10 but others seem missing (doi:10.1038/nature04342 and doi:10.1038/nbt1413 are there, but doi: 10.1038/msb4100025 is not?). \n\nMore seriously, I also worry that key relations and actors are absent or misrepresented. Again, as quick local examples: Where is SynBERC? Where is iGEM? Where is the BBF? \n\nIn summary, I wish that the article included a critical discussion on the limits of its methods. I do very much appreciate the author's pioneering use of new tools to visualize what might be happening. I would like to see this work repeated with other databases (e.g., Google Scholar), and would love to see systematic critical analysis.\n\n-Drew Endy\n\n\n", "isRemoved"=>false, "created"=>"2012-04-26T16:57:27Z", "lastModified"=>"2012-04-26T16:57:27Z", "creator"=>{"userId"=>"141155"}, "highlightedText"=>"", "competingInterestStatement"=>{"creatorWasPrompted"=>true, "hasCompetingInterests"=>true, "body"=>"Obvious (i.e., professional life's work is subject of published study)."}, "parentArticle"=>{"doi"=>"info:doi/10.1371/journal.pone.0034368", "state"=>"published", "journals"=>{"PLoSONE"=>{"journalKey"=>"PLoSONE", "eIssn"=>"1932-6203", "title"=>"PLOS ONE"}}}, "replyTreeSize"=>3, "mostRecentActivity"=>"2012-04-30T14:35:22Z", "replies"=>[{"type"=>"REPLY", "parentID"=>6003, "annotationUri"=>"info:doi/10.1371/reply/a125c597-d4c7-493b-84e0-ee72e494aaa2", "title"=>"RE: here be dragons... careful reading is required", "body"=>"We appreciate these comments.\n\nThe article and the accompanying dataset require careful reading and I think a Tableau workbook may well take some getting used to. For example, doi: 10.1038/msb4100025 by Chan et el Refactoring bacteriophage T7 mentioned in the comment as missing is actually in the workbook. It can be located by scrolling down the trends panel containing title and first author data to 2005 i.e. by downloading the workbook for Tableau Reader or in the Tableau Public mirror workbook here http://bit.ly/GJ1h2B. This is of course where it should be. \n\nAs mentioned in the article, there is an important limitation with respect to back cited literature. That is articles cited by the synthetic biology corpus but that do not use the key terms in the title, abstract or author keywords sections. These articles appeared in the cited literature for the core data but purely as abbreviated references. As we explained, we lacked the means to readily retrieve the full records for thousands of back citations from Web of Science. This was frustrating. If a practical computational means could be found to retrieve the full data for these references a wider picture of the historical emergence of synthetic biology and important articles shaping the field would emerge. We would like to see that happen.\n\nWith regard to organisations and networks. Institutional data requires significant cleaning and decision making on allocations. For example, SynBERC is a multi-institutional collaboration but Berkeley is the lead partner and the people listed as working there have Berkeley email addresses. SynBERC was therefore aggregated onto Berkeley. There is however a broader methodological issue in how to appropriately allocate inter-institutional research centres in a way that fully reflects their characteristics. Using animated network visualizations and scaleable aggregation layers would be one way forward. \n\niGem and BBF are important in synthetic biology. However, as far as I am aware they are not organisations that appear as author affiliations in the literature we focused on mapping. They are still important. I think mapping of participants in iGem and users of the BBF would be an interesting and informative project (and efforts may well be underway in that area of which I am unaware). \n\nThe suggestion that the work be repeated with other databases such as Google Scholar or Scopus makes very good sense. Web based network mapping would also be valuable. In general, we regard the article as a start in mapping synthetic biology in a way that is transparent and promotes engagement and appreciate the comments received. \n\nPaul Oldham", "isRemoved"=>false, "created"=>"2012-04-26T19:47:27Z", "lastModified"=>"2012-04-26T19:47:27Z", "creator"=>{"userId"=>"267141"}, "highlightedText"=>"", "competingInterestStatement"=>{"creatorWasPrompted"=>true, "hasCompetingInterests"=>true, "body"=>"Lead author of the article"}, "parentArticle"=>{"doi"=>"info:doi/10.1371/journal.pone.0034368", "state"=>"published", "journals"=>{"PLoSONE"=>{"journalKey"=>"PLoSONE", "eIssn"=>"1932-6203", "title"=>"PLOS ONE"}}}, "replyTreeSize"=>2, "mostRecentActivity"=>"2012-04-30T14:35:22Z", "replies"=>[{"type"=>"REPLY", "parentID"=>32795, "annotationUri"=>"info:doi/10.1371/reply/e66dbb13-c6a7-4ecb-931f-ea86f5f87454", "title"=>"RE: RE: here be dragons... careful reading is required", "body"=>"Thanks for your response and explanations which I really appreciate. It might always be difficult to understand what collections of humans are doing. I hope that the article and these comments will be read carefully.\n\nAs another question, given that you had (have) the goal of informing the CBD policy making process it seems strange to use a raw academic literature database as your primary source data. For example, iGEM is likely the largest-by-far distributor of engineered genetic material across national borders (both as sequence information and material) and seems likely to define the future leadership culture within practicing genetic engineers globally. As a second example, a search of the academic AND industry literature for acknowledgements of gene synthesis companies would help to establish a map for how genetic information & material are flowing within the commercial sector. \n\nWith thanks again and best wishes, -Drew", "isRemoved"=>false, "created"=>"2012-04-27T00:18:28Z", "lastModified"=>"2012-04-27T00:18:28Z", "creator"=>{"userId"=>"141155"}, "highlightedText"=>"", "competingInterestStatement"=>{"creatorWasPrompted"=>true, "hasCompetingInterests"=>true, "body"=>"Unchanged."}, "parentArticle"=>{"doi"=>"info:doi/10.1371/journal.pone.0034368", "state"=>"published", "journals"=>{"PLoSONE"=>{"journalKey"=>"PLoSONE", "eIssn"=>"1932-6203", "title"=>"PLOS ONE"}}}, "replyTreeSize"=>1, "mostRecentActivity"=>"2012-04-30T14:35:22Z", "replies"=>[{"type"=>"REPLY", "parentID"=>33381, "annotationUri"=>"info:doi/10.1371/reply/6109cce7-70c1-4b8d-b21d-c7c5047431ca", "title"=>"RE: RE: RE: here be dragons... careful reading is required", "body"=>"Thanks for these very useful comments Drew, \n\nWe focused on the academic literature for a couple of different reasons. The first is that we think that delegations to the CBD will not possess much information about synthetic biology and what is happening in their countries. The scientific data provided a good way of providing a basic insight into the who, what and where of the field in a way that can be repeated. We were particularly pleased that the citing landscape revealed such an interesting picture of the ways that synthetic biology is being picked up around the world. \n\nThe second reason is that for some time (indeed a long time) I have been working towards completing the patent landscape. In the absence of a controlled vocabulary the research has focused on following researchers from the literature into the patent system. This is methodologically difficult and time consuming but provides a sound route to identifying patent activity. Stephen and I are looking at ways to speed this up because the demands of annually updating the data is a significant obstacle to the wider use of the method. \n\nI also agree with both of the points that you raise. For example, I can see that iGem provides an actual example of practices in distributing material and information across national boundaries. Case studies on iGEM (and BBF) could provide very useful data on these practices if the CBD picks up this issue for further work. Just as important is the issue you raise of future leadership culture. Here one practical suggestion would be for the iGEM organizers to extend an invitation for members of the Secretariat of the CBD (i.e. via a letter to the Executive Secretary) to attend an iGEM conference. That approach could provide iGEM participants with a fuller understanding of the objectives of the CBD and at the same time provide members of the Secretariat with information on iGEM. \n\nI also think that the point you raise about searching the academic and industry literature is quite right. I had seen the patent landscape as part of a way forward on this. However, I think that you are raising a wider issue involving mapping outside the formal literature. I think the challenge here would be working up stable methods (and tools) for identifying that data, extracting, analysing and updating over time. Stephen and I developed a tool some time ago for complex web searching that you can visit here http://www.researchdesktop.org/?theme=syntheticbiology . It is inspired by iGoogle and works with standards compliant browsers. Try entering a gene synthesis company name into the search (or synthetic biology). We have not done much with this recently and some of the gadgets may need an update. However, this kind of intermediate analytics tool could perhaps help with gathering data on these issues. \n\nOnce again many thanks for these very useful comments. Paul ", "isRemoved"=>false, "created"=>"2012-04-30T14:35:22Z", "lastModified"=>"2012-04-30T14:35:22Z", "creator"=>{"userId"=>"267141"}, "highlightedText"=>"", "competingInterestStatement"=>{"creatorWasPrompted"=>true, "hasCompetingInterests"=>true, "body"=>"Lead author"}, "parentArticle"=>{"doi"=>"info:doi/10.1371/journal.pone.0034368", "state"=>"published", "journals"=>{"PLoSONE"=>{"journalKey"=>"PLoSONE", "eIssn"=>"1932-6203", "title"=>"PLOS ONE"}}}, "replyTreeSize"=>0, "mostRecentActivity"=>"2012-04-30T14:35:22Z", "replies"=>[]}]}]}]}

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• {"id"=>"205921327952052224", "text"=>"#PLoS: Synthetic Biology: Mapping the Scientific Landscape http://t.co/z6U9RHoq", "created_at"=>"2012-05-25T07:20:45Z", "user"=>"emmecola", "user_name"=>"Moreno Colaiacovo", "user_profile_image"=>"http://a0.twimg.com/profile_images/1105723701/emmecola_normal.jpeg"}
• {"id"=>"205926719570456577", "text"=>"RT @emmecola: #PLoS: Synthetic Biology: Mapping the Scientific Landscape http://t.co/z6U9RHoq", "created_at"=>"2012-05-25T07:42:10Z", "user"=>"westr", "user_name"=>"Robert West PhD", "user_profile_image"=>"http://a0.twimg.com/profile_images/1349311046/westr_178KB_normal.jpg"}
• {"id"=>"208244711033536512", "text"=>"RT @emmecola: #PLoS: Synthetic Biology: Mapping the Scientific Landscape http://t.co/nQSGy8pS", "created_at"=>"2012-05-31T17:13:02Z", "user"=>"geneXplain", "user_name"=>"geneXplain GmbH", "user_profile_image"=>"http://a0.twimg.com/profile_images/1441879580/x_73x73_normal.png"}
• {"id"=>"208348142108811264", "text"=>"PLoS ONE: Synthetic Biology: Mapping the Scientific Landscape http://t.co/JHw3bk9m", "created_at"=>"2012-06-01T00:04:02Z", "user"=>"Jason_Scroggins", "user_name"=>"Jason_Scroggins", "user_profile_image"=>"http://a0.twimg.com/profile_images/84799440/PA300027_normal.JPG"}
• {"id"=>"208363534113968128", "text"=>"RT @Jason_Scroggins: PLoS ONE: Synthetic Biology: Mapping the Scientific Landscape http://t.co/JHw3bk9m", "created_at"=>"2012-06-01T01:05:12Z", "user"=>"somatosphere", "user_name"=>"Somatosphere", "user_profile_image"=>"http://a0.twimg.com/profile_images/1577805930/apple-touch-icon_normal.png"}
• {"id"=>"208420651583815681", "text"=>"RT @geneXplain: RT @emmecola: #PLoS: Synthetic Biology: Mapping the Scientific Landscape http://t.co/nQSGy8pS", "created_at"=>"2012-06-01T04:52:10Z", "user"=>"synt_biology", "user_name"=>" Martin D-F", "user_profile_image"=>"http://a0.twimg.com/profile_images/2056413156/hafen02072011_013_normal.JPG"}
• {"id"=>"208421078429736960", "text"=>"RT @Jason_Scroggins: PLoS ONE: Synthetic Biology: Mapping the Scientific Landscape http://t.co/JHw3bk9m", "created_at"=>"2012-06-01T04:53:52Z", "user"=>"synt_biology", "user_name"=>" Martin D-F", "user_profile_image"=>"http://a0.twimg.com/profile_images/2056413156/hafen02072011_013_normal.JPG"}
• {"id"=>"208451533837307906", "text"=>"RT @Jason_Scroggins: PLoS ONE: Synthetic Biology: Mapping the Scientific Landscape http://t.co/JHw3bk9m", "created_at"=>"2012-06-01T06:54:53Z", "user"=>"gilbertjacka", "user_name"=>"Jack A Gilbert", "user_profile_image"=>"http://a0.twimg.com/profile_images/1563678761/EMP-green-small_normal.png"}
• {"id"=>"208553300096847874", "text"=>"RT @Jason_Scroggins: PLoS ONE: Synthetic Biology: Mapping the Scientific Landscape http://t.co/JHw3bk9m", "created_at"=>"2012-06-01T13:39:16Z", "user"=>"prfpathogeno", "user_name"=>"prfpathogeno", "user_profile_image"=>"http://a0.twimg.com/profile_images/1643274999/image_normal.jpg"}
• {"id"=>"208565001315827712", "text"=>"RT @Jason_Scroggins: PLoS ONE: Synthetic Biology: Mapping the Scientific Landscape http://t.co/JHw3bk9m", "created_at"=>"2012-06-01T14:25:45Z", "user"=>"gawbul", "user_name"=>"Steve Moss", "user_profile_image"=>"http://a0.twimg.com/profile_images/1209233353/34973bd0-3aed-4f8f-90dd-b833077acac4_normal.png"}
• {"id"=>"236839051246845953", "text"=>"Synthetic #Biology: Mapping the Scientific Landscape http://t.co/iCk8iP82", "created_at"=>"2012-08-18T14:56:44Z", "user"=>"The_Primate", "user_name"=>"The Primate, I AM", "user_profile_image"=>"http://a0.twimg.com/profile_images/1547361562/BOOTLEG_normal.png"}
• {"id"=>"237703161350086657", "text"=>"Synthetic Biology: Mapping the Scientific Landscape http://t.co/iqHTKbmA", "created_at"=>"2012-08-21T00:10:24Z", "user"=>"LIFESynBio", "user_name"=>"Synthetic Biology", "user_profile_image"=>"http://a0.twimg.com/profile_images/2261015801/LifeSyntheticBiology_normal.jpg"}
• {"id"=>"244210978802237440", "text"=>"Synthetic Biology: Mapping the Scientific Landscape http://t.co/v0CewiqO", "created_at"=>"2012-09-07T23:10:09Z", "user"=>"LIFESynBio", "user_name"=>"Synthetic Biology", "user_profile_image"=>"http://a0.twimg.com/profile_images/2261015801/LifeSyntheticBiology_normal.jpg"}
• {"id"=>"244212066376888320", "text"=>"Synthetic Biology: Mapping the Scientific Landscape http://t.co/4JInLGBJ", "created_at"=>"2012-09-07T23:14:28Z", "user"=>"streetball16", "user_name"=>"Eric", "user_profile_image"=>"http://a0.twimg.com/profile_images/560857214/n769175454_4438676_2707_normal.jpg"}
• {"id"=>"255990161597403136", "text"=>"Synthetic Biology Mapping the Scientific Landscape http://t.co/DwtWcTId interactive workbook http://t.co/SHMLBMAW #COP11 #CBD #biodiversity", "created_at"=>"2012-10-10T11:16:25Z", "user"=>"RDSynBio", "user_name"=>"RD2", "user_profile_image"=>"http://a0.twimg.com/profile_images/2189437184/replace_normal.jpg"}
• {"id"=>"259438858146570240", "text"=>"Synthetic Biology: Mapping the Scientific Landscape http://t.co/mlqgHX86", "created_at"=>"2012-10-19T23:40:18Z", "user"=>"LIFESynBio", "user_name"=>"Synthetic Biology", "user_profile_image"=>"http://a0.twimg.com/profile_images/2646171590/4abaec419e79d2cefdeeaaf7b3080840_normal.jpeg"}
• {"id"=>"270202400227356672", "text"=>"Mapping the Scientific Landscape of #SyntheticBiology http://t.co/MPuZwzmS", "created_at"=>"2012-11-18T16:30:46Z", "user"=>"LIFESynBio", "user_name"=>"Synthetic Biology", "user_profile_image"=>"http://a0.twimg.com/profile_images/2646171590/4abaec419e79d2cefdeeaaf7b3080840_normal.jpeg"}
• {"id"=>"270215885480935424", "text"=>"RT @LIFESynBio: Mapping the Scientific Landscape of #SyntheticBiology http://t.co/MPuZwzmS", "created_at"=>"2012-11-18T17:24:22Z", "user"=>"idtdna", "user_name"=>"Integrated DNA Tech", "user_profile_image"=>"http://a0.twimg.com/profile_images/2137647987/IDT__200x200_white_on_blue__normal.jpg"}
• {"id"=>"270217241709121536", "text"=>"RT @LIFESynBio: Mapping the Scientific Landscape of #SyntheticBiology http://t.co/MPuZwzmS", "created_at"=>"2012-11-18T17:29:45Z", "user"=>"dorisday666", "user_name"=>"diego", "user_profile_image"=>"http://a0.twimg.com/profile_images/2863019512/4fc7ba551105c39177dc6efdff511c2c_normal.jpeg"}
• {"id"=>"270222694702788610", "text"=>"RT @LIFESynBio: Mapping the Scientific Landscape of #SyntheticBiology http://t.co/MPuZwzmS", "created_at"=>"2012-11-18T17:51:25Z", "user"=>"westr", "user_name"=>"Robert West PhD", "user_profile_image"=>"http://a0.twimg.com/profile_images/1349311046/westr_178KB_normal.jpg"}
• {"id"=>"270266316122906625", "text"=>"RT @LIFESynBio: Mapping the Scientific Landscape of #SyntheticBiology http://t.co/MPuZwzmS", "created_at"=>"2012-11-18T20:44:45Z", "user"=>"zenmart", "user_name"=>"Oscar G.", "user_profile_image"=>"http://a0.twimg.com/profile_images/2472368056/bsxk27xllthw70snyde4_normal.jpeg"}
• {"id"=>"270453738265796608", "text"=>"RT @LIFESynBio - #syntheticbiology Mapping the Scientific Landscape of #SyntheticBiology http://t.co/tBMMCN1V", "created_at"=>"2012-11-19T09:09:30Z", "user"=>"algenuity", "user_name"=>"Algenuity", "user_profile_image"=>"http://a0.twimg.com/profile_images/2605852490/b97k9a8cp6q71qluultk_normal.png"}
• {"id"=>"270488820988932097", "text"=>"New insights into the emergence, diversification and future governance of Synthetic Biology. http://t.co/PrclRCjm", "created_at"=>"2012-11-19T11:28:55Z", "user"=>"TiMet_Project", "user_name"=>"TiMet", "user_profile_image"=>"http://a0.twimg.com/profile_images/2498773101/0srxhdpmmtlbx4qxvdbj_normal.jpeg"}
• {"id"=>"270489721296281601", "text"=>"RT @TiMet_Project: New insights into the emergence, diversification and future governance of Synthetic Biology. http://t.co/PrclRCjm", "created_at"=>"2012-11-19T11:32:29Z", "user"=>"plantscience", "user_name"=>"Ruth Bastow", "user_profile_image"=>"http://a0.twimg.com/profile_images/2327979411/mhwogznlrl61urelt1c6_normal.jpeg"}
• {"id"=>"270493978598703104", "text"=>"RT @TiMet_Project: New insights into the emergence, diversification and future governance of Synthetic Biology. http://t.co/PrclRCjm", "created_at"=>"2012-11-19T11:49:24Z", "user"=>"socbiopol", "user_name"=>"Laura Bellingan", "user_profile_image"=>"http://a0.twimg.com/profile_images/1532673836/Laura_BW_web_normal.jpg"}
• {"id"=>"270535084786974720", "text"=>"RT @TiMet_Project: New insights into the emergence, diversification and future governance of Synthetic Biology. http://t.co/PrclRCjm", "created_at"=>"2012-11-19T14:32:45Z", "user"=>"silverio_garcia", "user_name"=>"Dr.Silverio Garcia", "user_profile_image"=>"http://a0.twimg.com/profile_images/1708950667/image_normal.jpg"}
• {"id"=>"270626391916154880", "text"=>"RT @TiMet_Project: New insights into the emergence, diversification and future governance of Synthetic Biology. http://t.co/PrclRCjm", "created_at"=>"2012-11-19T20:35:34Z", "user"=>"ATerry_CEA", "user_name"=>"Adrian Terry", "user_profile_image"=>"http://a0.twimg.com/profile_images/1769655370/A_Terry_3_normal.jpg"}
• {"id"=>"270941136812638208", "text"=>"RT @LIFESynBio: Mapping the Scientific Landscape of #SyntheticBiology http://t.co/MPuZwzmS", "created_at"=>"2012-11-20T17:26:15Z", "user"=>"Uniparts", "user_name"=>"Uniparts, SA de CV", "user_profile_image"=>"http://a0.twimg.com/profile_images/1219232535/cultivouniparts2_normal.gif"}
• {"id"=>"281466750258778112", "text"=>"Review:\"Synthetic Biology: Mapping the Scientific Landscape\", Burton et al, PLOS ONE 2012. http://t.co/pQjESUAp", "created_at"=>"2012-12-19T18:31:17Z", "user"=>"SynBioNews", "user_name"=>"Vincent Rouilly", "user_profile_image"=>"http://a0.twimg.com/profile_images/1056373704/Lego_DNA_Cartoon_normal.jpg"}
• {"id"=>"362950900131708930", "text"=>"Synthetic Biology: Mapping the Scientific Landscape [PDF] http://t.co/Lim6Ljmy6U", "created_at"=>"2013-08-01T15:00:12Z", "user"=>"MrEnkapsis", "user_name"=>"Sebastian", "user_profile_image"=>"http://a0.twimg.com/profile_images/378800000219746926/8b3eba5cb9f2cbb51f9a6197907e58b3_normal.jpeg"}
• {"id"=>"375555386570338304", "text"=>"Synthetic biology anthropology http://t.co/curV1n4snI", "created_at"=>"2013-09-05T09:45:56Z", "user"=>"bartpander", "user_name"=>"bartpander", "user_profile_image"=>"http://a0.twimg.com/profile_images/1175170638/IMG_4335_normal.JPG"}
• {"id"=>"453536676824895488", "text"=>"#PLOSONE: Synthetic Biology: Mapping the Scientific Landscape http://t.co/2ZiwRZLlc8 #SynBio", "created_at"=>"2014-04-08T14:15:44Z", "user"=>"Sarah_Zhr", "user_name"=>"Sarah Zhr", "user_profile_image"=>"http://pbs.twimg.com/profile_images/415495200761335810/oYPmRZvX_normal.jpeg"}
• {"id"=>"646296286413619200", "text"=>"Synthetic Biology: Mapping the Scientific Landscape; Nice overview of the field http://t.co/56Q4bXMDqY", "created_at"=>"2015-09-22T12:13:36Z", "user"=>"VIBTechWatch", "user_name"=>"VIB Tech Watch ", "user_profile_image"=>"http://pbs.twimg.com/profile_images/636452273028120577/5aAeFDb1_normal.jpg"}
• {"id"=>"775628594294951936", "text"=>"More on the topic (from 2012) https://t.co/DJOdcW3EBX @sjb015 Also via @PLOSONE ping @PLOSSynbio @PLOS", "created_at"=>"2016-09-13T09:34:02Z", "user"=>"heluc", "user_name"=>"Luc Henry", "user_profile_image"=>"http://pbs.twimg.com/profile_images/479959658359050240/f-1Log7L_normal.jpeg"}

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Figshare

• {"files"=>["https://ndownloader.figshare.com/files/649942"], "description"=>"<p>This network map shows the relationships between 527 clusters of authors with publications on synthetic biology in <i>Web of Science</i>. Node size is based on the number of publications for a given author.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>320445, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g006", "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Author_Network_/320445", "title"=>"Author Network.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:07:25"}
• {"files"=>["https://ndownloader.figshare.com/files/650309"], "description"=>"<p>This figure compares the Thomson Reuters Web of Science journal subject categories for journal articles in the core landscape (orange) with those in the citing landscape (blue). Data was split on the subject category field to focus on individual journal subject categories.</p>", "links"=>[], "tags"=>["categories", "citing"], "article_id"=>320810, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g009", "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Journal_Subject_Categories_Core_and_Citing_Landscapes_/320810", "title"=>"Journal Subject Categories Core and Citing Landscapes.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:13:30"}
• {"files"=>["https://ndownloader.figshare.com/files/649795"], "description"=>"<p>This network map shows all author organizations with more than three publication records in <i>Web of Science</i> for the core landscape for synthetic biology. Where available this network map distinguishes organizations by locations (i.e. ETH) to distinguish groups. This is a Fruchterman-Reingold algorithm network representation in Gephi. The original dense representation was expanded and nodes were manually adjusted to prevent label overlaps and reduce irrelevant node to edge intersections.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>320298, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g005", "stats"=>{"downloads"=>2, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Organization_Network_/320298", "title"=>"Organization Network.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:04:58"}
• {"files"=>["https://ndownloader.figshare.com/files/649455"], "description"=>"<p>A Fruchterman-Reingold representation in Gephi of the top 356 aggregated terms of 36,262 terms within <i>Web of Science</i> literature for synthetic biology based on titles, abstracts and author keywords following stemming. Node size is based on the number of records. Node positions have been adjusted to clarify labels.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>319949, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g002", "stats"=>{"downloads"=>1, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Key_Terms_Network_/319949", "title"=>"Key Terms Network.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 02:45:49"}
• {"files"=>["https://ndownloader.figshare.com/files/649675"], "description"=>"<p>The figure ranks countries on the number of authors from a country appearing in publications in <i>Web of Science</i> linked to geocoded organizational information on their global distribution. Country rankings are base on data for 1160 records of 1255 records. This data can be explored in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034368#pone.0034368.s002\" target=\"_blank\">Workbook S1</a>.</p>", "links"=>[], "tags"=>["rankings"], "article_id"=>320175, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g004", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Country_Rankings_and_Organization_Distribution_Map_/320175", "title"=>"Country Rankings and Organization Distribution Map.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:02:55"}
• {"files"=>["https://ndownloader.figshare.com/files/334030", "https://ndownloader.figshare.com/files/334070"], "description"=>"<div><p>This article uses data from Thomson Reuters <em>Web of Science</em> to map and analyse the scientific landscape for synthetic biology. The article draws on recent advances in data visualisation and analytics with the aim of informing upcoming international policy debates on the governance of synthetic biology by the Subsidiary Body on Scientific, Technical and Technological Advice (SBSTTA) of the United Nations Convention on Biological Diversity. We use mapping techniques to identify how synthetic biology can best be understood and the range of institutions, researchers and funding agencies involved. Debates under the Convention are likely to focus on a possible moratorium on the field release of synthetic organisms, cells or genomes. Based on the empirical evidence we propose that guidance could be provided to funding agencies to respect the letter and spirit of the Convention on Biological Diversity in making research investments. Building on the recommendations of the United States Presidential Commission for the Study of Bioethical Issues we demonstrate that it is possible to promote independent and transparent monitoring of developments in synthetic biology using modern information tools. In particular, public and policy understanding and engagement with synthetic biology can be enhanced through the use of online interactive tools. As a step forward in this process we make existing data on the scientific literature on synthetic biology available in an online interactive workbook so that researchers, policy makers and civil society can explore the data and draw conclusions for themselves.</p> </div>", "links"=>[], "tags"=>["synthetic"], "article_id"=>125972, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0034368.s001", "https://dx.doi.org/10.1371/journal.pone.0034368.s002"], "stats"=>{"downloads"=>20, "page_views"=>21, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Synthetic_Biology_Mapping_the_Scientific_Landscape/125972", "title"=>"Synthetic Biology: Mapping the Scientific Landscape", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2012-04-23 01:39:32"}
• {"files"=>["https://ndownloader.figshare.com/files/650228"], "description"=>"<p>This figure shows the main articles cited by other authors inside the core landscape for synthetic biology. Data is based on counts of citations in the cited literature field of publications in the core landscape. The data does not refer to total citations for an author or article within the wider scientific literature. This data can be explored in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034368#pone.0034368.s002\" target=\"_blank\">Workbook S1</a>.</p>", "links"=>[], "tags"=>["articles"], "article_id"=>320725, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g008", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Key_Articles_in_the_Core_Landscape_/320725", "title"=>"Key Articles in the Core Landscape.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:12:05"}
• {"files"=>["https://ndownloader.figshare.com/files/650134"], "description"=>"<p>This network map shows the network of authors with five or more publications on synthetic biology in <i>Web of Science</i>. Node size is based on the number of publications for a given author. Node position has been manually adjusted from <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034368#pone-0034368-g005\" target=\"_blank\">Figure 5</a> to clarify labels.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>320630, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g007", "stats"=>{"downloads"=>0, "page_views"=>1, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Main_Authors_/320630", "title"=>"Main Authors.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:10:30"}
• {"files"=>["https://ndownloader.figshare.com/files/650395"], "description"=>"<p>This map shows the network of relations between funding organizations appearing in 5 or more publications within <i>Web of Science</i> on synthetic biology. The figure was generated using the Force Atlas algorithm and the results were manually adjusted with the objective of preventing incorrect node to edge intersections. It should be noted that large nodes such as the US National Science Foundation may display intersections with unrelated edges.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>320891, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g010", "stats"=>{"downloads"=>1, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Top_Funding_Organizations_/320891", "title"=>"Top Funding Organizations.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:14:51"}
• {"files"=>["https://ndownloader.figshare.com/files/649354"], "description"=>"<p>Data from <i>Web of Science</i> topic search for synthetic biology or synthetic genomics or synthetic genome or synthetic genomes in January 2012. Data for recent years may be partial due to lag times. This data can be explored in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034368#pone.0034368.s002\" target=\"_blank\">Workbook S1</a>.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>319850, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g001", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Publication_Trends_/319850", "title"=>"Publication Trends.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 02:44:10"}
• {"files"=>["https://ndownloader.figshare.com/files/649543"], "description"=>"<p>A Fruchterman-Reingold representation in Gephi of the top aggregated terms for synthetic biology within <i>Web of Science</i> based on titles, abstracts and author keywords appearing in more than 20 or more records following stemming. Node size is based on the number of records. Node positions have been adjusted to clarify labels.</p>", "links"=>[], "tags"=>["molecular biology", "biotechnology", "ecology"], "article_id"=>320042, "categories"=>["Molecular Biology", "Biotechnology", "Ecology"], "users"=>["Paul Oldham", "Stephen Hall", "Geoff Burton"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0034368.g003", "stats"=>{"downloads"=>3, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Top_Terms_/320042", "title"=>"Top Terms.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-04-23 00:00:42"}

PMC Usage Stats | Further Information

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Relative Metric

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F1000Prime