Sequence Comparisons of Odorant Receptors among Tortricid Moths Reveal Different Rates of Molecular Evolution among Family Members
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{"title"=>"Sequence comparisons of odorant receptors among tortricid moths reveal different rates of molecular evolution among family members", "type"=>"journal", "authors"=>[{"first_name"=>"Colm", "last_name"=>"Carraher", "scopus_author_id"=>"24398444800"}, {"first_name"=>"Astrid", "last_name"=>"Authier", "scopus_author_id"=>"56631021100"}, {"first_name"=>"Bernd", "last_name"=>"Steinwender", "scopus_author_id"=>"38362317000"}, {"first_name"=>"Richard D.", "last_name"=>"Newcomb", "scopus_author_id"=>"7103019398"}], "year"=>2012, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "scopus"=>"2-s2.0-84862158430", "pui"=>"364995657", "doi"=>"10.1371/journal.pone.0038391", "isbn"=>"1932-6203", "sgr"=>"84862158430", "pmid"=>"22701634"}, "id"=>"3b8b8b37-f714-3223-9c52-5acdd8925a74", "abstract"=>"In insects, odorant receptors detect volatile cues involved in behaviours such as mate recognition, food location and oviposition. We have investigated the evolution of three odorant receptors from five species within the moth genera Ctenopseustis and Planotrotrix, family Tortricidae, which fall into distinct clades within the odorant receptor multigene family. One receptor is the orthologue of the co-receptor Or83b, now known as Orco (OR2), and encodes the obligate ion channel subunit of the receptor complex. In comparison, the other two receptors, OR1 and OR3, are ligand-binding receptor subunits, activated by volatile compounds produced by plants--methyl salicylate and citral, respectively. Rates of sequence evolution at non-synonymous sites were significantly higher in OR1 compared with OR2 and OR3. Within the dataset OR1 contains 109 variable amino acid positions that are distributed evenly across the entire protein including transmembrane helices, loop regions and termini, while OR2 and OR3 contain 18 and 16 variable sites, respectively. OR2 shows a high level of amino acid conservation as expected due to its essential role in odour detection; however we found unexpected differences in the rate of evolution between two ligand-binding odorant receptors, OR1 and OR3. OR3 shows high sequence conservation suggestive of a conserved role in odour reception, whereas the higher rate of evolution observed in OR1, particularly at non-synonymous sites, may be suggestive of relaxed constraint, perhaps associated with the loss of an ancestral role in sex pheromone reception.", "link"=>"http://www.mendeley.com/research/sequence-comparisons-odorant-receptors-among-tortricid-moths-reveal-different-rates-molecular-evolut-2", "reader_count"=>9, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Researcher"=>4, "Student > Ph. D. Student"=>2, "Student > Master"=>1, "Lecturer"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Researcher"=>4, "Student > Ph. D. Student"=>2, "Student > Master"=>1, "Lecturer"=>1}, "reader_count_by_subject_area"=>{"Engineering"=>1, "Unspecified"=>1, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>6}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>6}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>1}}, "reader_count_by_country"=>{"Netherlands"=>1}, "group_count"=>0}

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Figshare

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  • {"files"=>["https://ndownloader.figshare.com/files/625493"], "description"=>"<p>The neighbour joining tree was constructed from dayhoff amino acid distances. The positions of OR1, OR2 (Orco), and OR3 from <i>Epiphyas postvittana</i> are indicated with arrows (EpOR1, EpOR2, and EpOR3), while the Orco and sex pheromone receptor clades are highlighted by semicircles.</p>", "links"=>[], "tags"=>["phylogenetic", "lepidopteran", "odorant", "receptors", "genbank"], "article_id"=>295975, "categories"=>["Evolutionary Biology", "Neuroscience", "Molecular Biology", "Biophysics", "Biochemistry", "Physics", "Biological Sciences"], "users"=>["Colm Carraher", "Astrid Authier", "Bernd Steinwender", "Richard D. Newcomb"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0038391.g001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Unrooted_phylogenetic_tree_of_all_lepidopteran_odorant_receptors_within_Genbank_as_of_8_November_2010_/295975", "title"=>"Unrooted phylogenetic tree of all lepidopteran odorant receptors within Genbank as of 8 November, 2010.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-06-11 01:39:35"}
  • {"files"=>["https://ndownloader.figshare.com/files/625691"], "description"=>"<p>The double line indicates the membrane region, with extracellular and cytoplasmic sides labelled.</p>", "links"=>[], "tags"=>["transmembrane", "topologies", "or1", "or2", "or3", "sites", "highlighted"], "article_id"=>296157, "categories"=>["Evolutionary Biology", "Neuroscience", "Molecular Biology", "Biophysics", "Biochemistry", "Physics", "Biological Sciences"], "users"=>["Colm Carraher", "Astrid Authier", "Bernd Steinwender", "Richard D. Newcomb"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0038391.g002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Predicted_transmembrane_topologies_of_OR1_A_OR2_B_and_OR3_C_with_variable_sites_highlighted_in_red_/296157", "title"=>"Predicted transmembrane topologies of OR1 (A), OR2 (B) and OR3 (C), with variable sites highlighted in red.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-06-11 01:42:37"}
  • {"files"=>["https://ndownloader.figshare.com/files/625813"], "description"=>"<p>The ratio for each domain is the average of the number of amino acid differences divided by the number of expected differences. Expected differences were calculated by multiplying the length of the domain by the total number of differences per protein then dividing by the length of the protein. The ratio would be 1 if the amino acid changes occurred at the same rate across the entire protein. N-ter = N terminus; TM1-TM7 = transmembrane domains 1–7; IL1-3 = internal loops 1–3; EL1-3 = external loops 1–3; C-ter = C terminus. ND = not determined.</p>", "links"=>[], "tags"=>["amino", "differences", "averaged", "or2", "or3"], "article_id"=>296293, "categories"=>["Evolutionary Biology", "Neuroscience", "Molecular Biology", "Biophysics", "Biochemistry", "Physics", "Biological Sciences"], "users"=>["Colm Carraher", "Astrid Authier", "Bernd Steinwender", "Richard D. Newcomb"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0038391.g003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Ratio_of_the_relative_amino_acid_differences_per_domain_averaged_for_OR1_OR2_Orco_and_OR3_across_i_Ctenopseustis_obliquana_i_i_C_herana_i_i_Planotortrix_octo_i_i_P_excessana_i_and_i_P_notophaea_i_/296293", "title"=>"Ratio of the relative amino acid differences per domain averaged for OR1, OR2 (Orco) and OR3 across <i>Ctenopseustis obliquana</i>, <i>C. herana</i>, <i>Planotortrix octo</i>, <i>P. excessana</i> and <i>P. notophaea</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2012-06-11 01:44:53"}
  • {"files"=>["https://ndownloader.figshare.com/files/626093"], "description"=>"a<p>Ctenopseustis obliquana.</p>b<p>C. herana.</p>c<p>Planotortrix excessana.</p>d<p>P. octo.</p>e<p>P. notophaea.</p>f<p>Epiphyas postvittana.</p>g<p>BmOR1.</p>h<p>BmOR2.</p>i<p>BmOR49.</p>", "links"=>[], "tags"=>["matrix", "orthologues", "or2"], "article_id"=>296576, "categories"=>["Evolutionary Biology", "Neuroscience", "Molecular Biology", "Biophysics", "Biochemistry", "Physics", "Biological Sciences"], "users"=>["Colm Carraher", "Astrid Authier", "Bernd Steinwender", "Richard D. Newcomb"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0038391.t002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Amino_acid_identity_matrix_for_i_Ctenopseustis_i_and_i_Planotortrix_i_orthologues_of_OR1_OR2_and_OR2_/296576", "title"=>"Amino acid identity matrix for <i>Ctenopseustis</i> and <i>Planotortrix</i> orthologues of OR1, OR2 and OR2.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-06-11 01:49:36"}
  • {"files"=>["https://ndownloader.figshare.com/files/626131"], "description"=>"<p>model A assumes complete homogeneity among genes, while model B assumes different substitution rates but the same pattern of nucleotide substitution for each gene.</p>", "links"=>[], "tags"=>["concatenated"], "article_id"=>296619, "categories"=>["Evolutionary Biology", "Neuroscience", "Molecular Biology", "Biophysics", "Biochemistry", "Physics", "Biological Sciences"], "users"=>["Colm Carraher", "Astrid Authier", "Bernd Steinwender", "Richard D. Newcomb"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0038391.t003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Likelihood_ratio_tests_between_concatenated_sequences_/296619", "title"=>"Likelihood ratio tests between concatenated sequences.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-06-11 01:50:19"}
  • {"files"=>["https://ndownloader.figshare.com/files/626177"], "description"=>"a<p>number of sequences.</p>b<p>number of codons.</p>c<p>tree length.</p>d<p>transition/transversion ratio.</p>e<p>dN/dS under M0.</p>f<p>dN/dS under M3.</p>", "links"=>[], "tags"=>["odorant", "receptors", "or2", "or3"], "article_id"=>296657, "categories"=>["Evolutionary Biology", "Neuroscience", "Molecular Biology", "Biophysics", "Biochemistry", "Physics", "Biological Sciences"], "users"=>["Colm Carraher", "Astrid Authier", "Bernd Steinwender", "Richard D. Newcomb"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0038391.t001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Summary_statistics_for_odorant_receptors_OR1_OR2_and_OR3_from_i_Ctenopseustis_i_and_i_Planotortrix_i_species_/296657", "title"=>"Summary statistics for odorant receptors OR1, OR2 and OR3 from <i>Ctenopseustis</i> and <i>Planotortrix</i> species.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2012-06-11 01:50:57"}

PMC Usage Stats | Further Information

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  • {"unique-ip"=>"5", "full-text"=>"2", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2016", "month"=>"2"}
  • {"unique-ip"=>"6", "full-text"=>"2", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2014", "month"=>"11"}
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Relative Metric

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