Nanoindentation of 35 Virus Capsids in a Molecular Model: Relating Mechanical Properties to Structure
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{"title"=>"Nanoindentation of 35 Virus Capsids in a Molecular Model: Relating Mechanical Properties to Structure", "type"=>"journal", "authors"=>[{"first_name"=>"Marek", "last_name"=>"Cieplak", "scopus_author_id"=>"22960465100"}, {"first_name"=>"Mark O.", "last_name"=>"Robbins", "scopus_author_id"=>"7202254091"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"pui"=>"369122412", "sgr"=>"84879059545", "issn"=>"19326203", "pmid"=>"23785395", "scopus"=>"2-s2.0-84879059545", "doi"=>"10.1371/journal.pone.0063640"}, "id"=>"ae4c904b-f7e5-3276-a9a0-d5209f59dbeb", "abstract"=>"A coarse-grained model is used to study the mechanical response of 35 virus capsids of symmetries T = 1, T = 2, T = 3, pseudo T = 3, T = 4, and T = 7. The model is based on the native structure of the proteins that constitute the capsids and is described in terms of the C[Formula: see text] atoms associated with each amino acid. The number of these atoms ranges between 8 460 (for SPMV - satellite panicum mosaic virus) and 135 780 (for NBV - nudaureli virus). Nanoindentation by a broad AFM tip is modeled as compression between two planes: either both flat or one flat and one curved. Plots of the compressive force versus plate separation show a variety of behaviors, but in each case there is an elastic region which extends to a characteristic force [Formula: see text]. Crossing [Formula: see text] results in a drop in the force and irreversible damage. Across the 35 capsids studied, both [Formula: see text] and the elastic stiffness are observed to vary by a factor of 20. The changes in mechanical properties do not correlate simply with virus size or symmetry. There is a strong connection to the mean coordination number [Formula: see text], defined as the mean number of interactions to neighboring amino acids. The Young's modulus for thin shell capsids rises roughly quadratically with [Formula: see text], where 6 is the minimum coordination for elastic stability in three dimensions.", "link"=>"http://www.mendeley.com/research/nanoindentation-35-virus-capsids-molecular-model-relating-mechanical-properties-structure", "reader_count"=>22, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>1, "Student > Doctoral Student"=>5, "Researcher"=>1, "Student > Ph. D. Student"=>8, "Student > Postgraduate"=>1, "Student > Master"=>2, "Student > Bachelor"=>1, "Professor"=>3}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>1, "Student > Doctoral Student"=>5, "Researcher"=>1, "Student > Ph. D. Student"=>8, "Student > Postgraduate"=>1, "Student > Master"=>2, "Student > Bachelor"=>1, "Professor"=>3}, "reader_count_by_subject_area"=>{"Engineering"=>3, "Biochemistry, Genetics and Molecular Biology"=>3, "Materials Science"=>1, "Agricultural and Biological Sciences"=>8, "Physics and Astronomy"=>3, "Chemistry"=>4}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>3}, "Materials Science"=>{"Materials Science"=>1}, "Chemistry"=>{"Chemistry"=>4}, "Physics and Astronomy"=>{"Physics and Astronomy"=>3}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>8}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}}, "reader_count_by_country"=>{"United States"=>3}, "group_count"=>0}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/4436833"], "description"=>"<p>The figure contains four panels, each consisting of two subpanels. The lower subpanel shows the variation of force with separation and the upper shows – the fraction of unbroken native contacts for one simulation at the indicated parameters. The top two panels show the temperature dependence of for flat plates, with numbers indicating the value of . The left shows three trajectories for from Ref. <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone.0063640-Cieplak1\" target=\"_blank\">[16]</a> and one for zero temperature that is uniformly higher. The right repeats one trajectory for and shows two trajectories for each other temperature. The value of is plotted for one case at the high and low temperatures. The two lower panels show the role of curvature in one of the indenting surfaces. Here,  = 0.3 and numbers indicate the radius of the tip in nm. The lower left panel compares single trajectories obtained for three values of to the flat results above. The lower right panel shows three trajectories for  = 30 nm.</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719267, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g001"], "stats"=>{"downloads"=>0, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Nanoindentation_of_model_for_CCMV_/719267", "title"=>"Nanoindentation of model for CCMV.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436836"], "description"=>"<p>As in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone-0063640-g001\" target=\"_blank\">Figure 1</a>, each panel consists of two subpanels. The lower subpanel shows several curves and the upper subpanel shows for the highlighted trajectory. For each capsid, two trajectories are shown for flat plates (solid lines) and for a tip with nm (dotted lines) at and one trajectory is shown for flat plates at zero temperature (dashed line).</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719269, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g002"], "stats"=>{"downloads"=>0, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Nanoindentation_processes_in_models_for_four_experimentally_studied_capsids_MVM_NV_HBV_and_HK97_/719269", "title"=>"Nanoindentation processes in models for four experimentally studied capsids MVM, NV, HBV, and HK97.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436839"], "description"=>"<p>The dotted line is obtained using the value ÅpN obtained by fitting mechanical stretching of proteins <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone.0063640-Sikora1\" target=\"_blank\">[22]</a>. Results for are better fit if this quantity is doubled (solid line).</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719270, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g003"], "stats"=>{"downloads"=>0, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Comparison_of_experimental_and_theoretical_results_for_the_top_panel_and_the_bottom_panel_for_the_five_indicated_capsids_/719270", "title"=>"Comparison of experimental and theoretical results for (the top panel) and (the bottom panel) for the five indicated capsids.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436842"], "description"=>"<p>The solid lines are different trajectories for two flat indenting planes. The dotted lines, if any, correspond to the case where one surface has radius of curvature 30 nm.</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719271, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g004"], "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Plots_of_at_for_six_capsids_of_the_T_1_symmetry_or_T_1_studied_in_this_paper_/719271", "title"=>"Plots of at for six capsids of the T = 1 symmetry (or T = 1) studied in this paper.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436845"], "description"=>"<p>Similar to <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone-0063640-g004\" target=\"_blank\">Figure 4</a> but for three remaining T = 1 capsids, one T = 2, and one T = 4.</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719273, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g005"], "stats"=>{"downloads"=>0, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Similar_to_Figure_4_but_for_three_remaining_T_1_capsids_one_T_2_and_one_T_4_/719273", "title"=>"Similar to Figure 4 but for three remaining T = 1 capsids, one T = 2, and one T = 4.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436848"], "description"=>"<p>Similar to <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone-0063640-g004\" target=\"_blank\">Figure 4</a> but for six T = 3 capsids listed in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone-0063640-t001\" target=\"_blank\">Table 1</a>.</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719274, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g006"], "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Similar_to_Figure_4_but_for_six_T_3_capsids_listed_in_Table_1_/719274", "title"=>"Similar to Figure 4 but for six T = 3 capsids listed in Table 1.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436851"], "description"=>"<p>Similar to <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone-0063640-g004\" target=\"_blank\">Figure 4</a> but for six pseudo T = 3 capsids listed in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone-0063640-t002\" target=\"_blank\">Table 2</a>.</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719276, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g007"], "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Similar_to_Figure_4_but_for_six_pseudo_T_3_capsids_listed_in_Table_2_/719276", "title"=>"Similar to Figure 4 but for six pseudo T = 3 capsids listed in Table 2.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436854"], "description"=>"<p>Continuation of <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone-0063640-g007\" target=\"_blank\">Figure 7</a> for the six remaining pseudo T = 3 capsids listed in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone-0063640-t002\" target=\"_blank\">Table 2</a>.</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719277, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g008"], "stats"=>{"downloads"=>1, "page_views"=>12, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Continuation_of_Figure_7_for_the_six_remaining_pseudo_T_3_capsids_listed_in_Table_2_/719277", "title"=>"Continuation of Figure 7 for the six remaining pseudo T = 3 capsids listed in Table 2.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436857"], "description"=>"<p>The indentation is implementd by flat walls. The solid lines are for SV40. The dashed lines are for HK97 – these lines are taken from <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone-0063640-g002\" target=\"_blank\">Figure 2</a> to make a comparison.</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719279, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g009"], "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Plots_of_for_two_capsids_of_the_T_7_symmetry_studied_in_this_paper_/719279", "title"=>"Plots of for two capsids of the T = 7 symmetry studied in this paper.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436860"], "description"=>"<p>The top panel is for capsids of symmetry T = 3 and pseudo T = 3 and the bottom panel for the remaining capsids. The vertical dotted line in the top panel indicates of 132 Å. In the bottom panel, the two similar lines correspond to of 73.0 and 109.4 Å.</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719281, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g010"], "stats"=>{"downloads"=>2, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Simulation_values_for_the_effective_spring_constant_plotted_against_the_average_radius_of_the_corresponding_capsid_/719281", "title"=>"Simulation values for the effective spring constant plotted against the average radius of the corresponding capsid.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436866"], "description"=>"<p>Similar to <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone-0063640-g010\" target=\"_blank\">Figure 10</a> but for the values of .</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719283, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g011"], "stats"=>{"downloads"=>0, "page_views"=>2, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Similar_to_Figure_10_but_for_the_values_of_/719283", "title"=>"Similar to Figure 10 but for the values of .", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436872"], "description"=>"<p>The top panel is for capsids of symmetry T = 3 and pseudo T = 3 and the bottom panel for the remaining capsids. Lines in the top panel show trends for T = 3 (dotted line) and pseudo T = 3 (dashed line). In the lower panel, the two lines link capsids with close to 73.0 and 109.4 Å respectively.</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719284, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g012"], "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Effective_spring_constant_plotted_against_the_average_coordination_number_of_the_corresponding_capsid_/719284", "title"=>"Effective spring constant plotted against the average coordination number of the corresponding capsid.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436887"], "description"=>"<p>Similar to <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone-0063640-g012\" target=\"_blank\">Figure 12</a> but for the characteristic force.</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719285, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g013"], "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Similar_to_Figure_12_but_for_the_characteristic_force_/719285", "title"=>"Similar to Figure 12 but for the characteristic force.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436890"], "description"=>"<p>The parabolic fit corresponds to the formula [/Å].</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719287, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.g014"], "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Similar_to_Figures_12_and_13_but_for_the_Young_modulus_/719287", "title"=>"Similar to Figures 12 and 13 but for the Young modulus.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436911"], "description"=>"<p>Similar to <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0063640#pone-0063640-t001\" target=\"_blank\">Table 1</a> but for the pseudo T = 3, T = 4, and T = 7 virus capsids.</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719289, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.t002"], "stats"=>{"downloads"=>0, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Similar_to_Table_1_but_for_the_pseudo_T_3_T_4_and_T_7_virus_capsids_/719289", "title"=>"Similar to Table 1 but for the pseudo T = 3, T = 4, and T = 7 virus capsids.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}
  • {"files"=>["https://ndownloader.figshare.com/files/4436902"], "description"=>"<p>Characteristics of the T = 1, T = 2, and T = 3 virus capsids that are studied in this paper.</p>", "links"=>[], "tags"=>["shell capsids", "Molecular Model", "SPMV", "acid", "Mechanical Properties", "35 virus capsids", "coordination number", "AFM tip", "35 Virus Capsids", "8 460", "NBV", "plate separation show", "Nanoindentation", "35 capsids", "virus size", "135 780", "atoms ranges", "model", "C atoms"], "article_id"=>719290, "categories"=>["Biophysics", "Cell Biology", "Genetics", "Environmental Sciences not elsewhere classified", "Chemical Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases", "Virology"], "users"=>["Marek Cieplak", "Mark O. Robbins"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0063640.t001"], "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Characteristics_of_the_T_8202_8202_1_T_8202_8202_2_and_T_8202_8202_3_virus_capsids_that_are_studied_in_this_paper_/719290", "title"=>"Characteristics of the T = 1, T = 2, and T = 3 virus capsids that are studied in this paper.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-06-13 14:57:55"}

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Relative Metric

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