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{"title"=>"When History Repeats Itself: Exploring the Genetic Architecture of Host-Plant Adaptation in Two Closely Related Lepidopteran Species", "type"=>"journal", "authors"=>[{"first_name"=>"Hermine", "last_name"=>"Alexandre", "scopus_author_id"=>"56921756700"}, {"first_name"=>"Sergine", "last_name"=>"Ponsard", "scopus_author_id"=>"6602823598"}, {"first_name"=>"Denis", "last_name"=>"Bourguet", "scopus_author_id"=>"55921175900"}, {"first_name"=>"Renaud", "last_name"=>"Vitalis", "scopus_author_id"=>"6701633876"}, {"first_name"=>"Philippe", "last_name"=>"Audiot", "scopus_author_id"=>"6506518855"}, {"first_name"=>"Sandrine", "last_name"=>"Cros-Arteil", "scopus_author_id"=>"6507538828"}, {"first_name"=>"Réjane", "last_name"=>"Streiff", "scopus_author_id"=>"7005161421"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "pui"=>"369305051", "sgr"=>"84880068791", "doi"=>"10.1371/journal.pone.0069211", "scopus"=>"2-s2.0-84880068791", "isbn"=>"1932-6203 (Electronic)\\r1932-6203 (Linking)", "pmid"=>"23874914"}, "id"=>"b14323a4-9e4f-3c78-a72e-30e0b0f44f24", "abstract"=>"The genus Ostrinia includes two allopatric maize pests across Eurasia, namely the European corn borer (ECB, O. nubilalis) and the Asian corn borer (ACB, O. furnacalis). A third species, the Adzuki bean borer (ABB, O. scapulalis), occurs in sympatry with both the ECB and the ACB. The ABB mostly feeds on native dicots, which probably correspond to the ancestral host plant type for the genus Ostrinia. This situation offers the opportunity to characterize the two presumably independent adaptations or preadaptations to maize that occurred in the ECB and ACB. In the present study, we aimed at deciphering the genetic architecture of these two adaptations to maize, a monocot host plant recently introduced into Eurasia. To this end, we performed a genome scan analysis based on 684 AFLP markers in 12 populations of ECB, ACB and ABB. We detected 2 outlier AFLP loci when comparing French populations of the ECB and ABB, and 9 outliers when comparing Chinese populations of the ACB and ABB. These outliers were different in both countries, and we found no evidence of linkage disequilibrium between any two of them. These results suggest that adaptation or preadaptation to maize relies on a different genetic architecture in the ECB and ACB. However, this conclusion must be considered in light of the constraints inherent to genome scan approaches and of the intricate evolution of adaptation and reproductive isolation in the Ostrinia spp. complex.", "link"=>"http://www.mendeley.com/research/history-repeats-itself-exploring-genetic-architecture-hostplant-adaptation-two-closely-related-lepid", "reader_count"=>28, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>1, "Librarian"=>1, "Researcher"=>6, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>5, "Student > Postgraduate"=>4, "Student > Master"=>4, "Other"=>2, "Student > Bachelor"=>1, "Lecturer > Senior Lecturer"=>2, "Professor"=>1}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>1, "Librarian"=>1, "Researcher"=>6, "Student > Doctoral Student"=>1, "Student > Ph. D. Student"=>5, "Student > Postgraduate"=>4, "Student > Master"=>4, "Other"=>2, "Student > Bachelor"=>1, "Lecturer > Senior Lecturer"=>2, "Professor"=>1}, "reader_count_by_subject_area"=>{"Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>25, "Arts and Humanities"=>1}, "reader_count_by_subdiscipline"=>{"Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>25}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Environmental Science"=>{"Environmental Science"=>1}, "Arts and Humanities"=>{"Arts and Humanities"=>1}}, "reader_count_by_country"=>{"Japan"=>1, "Ireland"=>1, "Poland"=>1, "Germany"=>1}, "group_count"=>1}

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• http://doi.org/10.1111/mec.15234
• http://doi.org/10.1111/eva.12481
• http://doi.org/10.1111/jeb.12766
• http://doi.org/10.1016/j.dib.2018.01.073
• http://doi.org/10.1093/bfgp/elv015
• http://doi.org/10.1534/genetics.118.301803
• http://doi.org/10.1111/mec.12608
• http://doi.org/10.1186/s12864-018-4589-x

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Figshare

• {"files"=>["https://ndownloader.figshare.com/files/1118476"], "description"=>"<p>Geographic location of samples in France (A) and China (B).</p>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "Evolutionary processes", "adaptation", "natural selection", "speciation", "population genetics", "Evolutionary ecology", "genetics", "Zoology", "Entomology", "samples", "france", "china"], "article_id"=>745080, "categories"=>["Biological Sciences"], "users"=>["Hermine Alexandre", "Sergine Ponsard", "Denis Bourguet", "Renaud Vitalis", "Philippe Audiot", "Sandrine Cros-Arteil", "Réjane Streiff"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0069211.g001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Geographic_location_of_samples_in_France_A_and_China_B_/745080", "title"=>"Geographic location of samples in France (A) and China (B).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-07-12 01:58:28"}
• {"files"=>["https://ndownloader.figshare.com/files/1118477"], "description"=>"<p>Boxplot of multi-locus <i>F</i>_ST estimates for pairwise intra- and inter-host comparisons among French (light grey) and Chinese (dark grey) populations.</p>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "Evolutionary processes", "adaptation", "natural selection", "speciation", "population genetics", "Evolutionary ecology", "genetics", "Zoology", "Entomology", "multi-locus", "estimates", "pairwise", "intra-", "inter-host", "comparisons", "french", "chinese"], "article_id"=>745081, "categories"=>["Biological Sciences"], "users"=>["Hermine Alexandre", "Sergine Ponsard", "Denis Bourguet", "Renaud Vitalis", "Philippe Audiot", "Sandrine Cros-Arteil", "Réjane Streiff"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0069211.g002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Boxplot_of_multi_locus_F_ST_estimates_for_pairwise_intra_and_inter_host_comparisons_among_French_light_grey_and_Chinese_dark_grey_populations_/745081", "title"=>"Boxplot of multi-locus <i>F</i>_ST estimates for pairwise intra- and inter-host comparisons among French (light grey) and Chinese (dark grey) populations.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-07-12 01:58:28"}
• {"files"=>["https://ndownloader.figshare.com/files/1118479"], "description"=>"<p>Each individual is represented by a vertical line, divided into up to <i>K</i> coloured segments representing the individual's estimated fraction of membership of each of the <i>K</i> clusters. Vertical black lines separate samples from different localities and host-plants, as labelled at the bottom of the figure. Host-plant and country are indicated at the top. For each value of <i>K</i>, the most supported clustering solutions, in terms of number of runs out of 20 (number given to the right of the plot) is represented, whereas alternate solutions are given in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0069211#pone.0069211.s002\" target=\"_blank\">Figure S2</a>.</p>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "Evolutionary processes", "adaptation", "natural selection", "speciation", "population genetics", "Evolutionary ecology", "genetics", "Zoology", "Entomology", "clustering"], "article_id"=>745083, "categories"=>["Biological Sciences"], "users"=>["Hermine Alexandre", "Sergine Ponsard", "Denis Bourguet", "Renaud Vitalis", "Philippe Audiot", "Sandrine Cros-Arteil", "Réjane Streiff"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0069211.g003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Estimated_clustering_from_structure_analyses_for_K_2_to_K_7_/745083", "title"=>"Estimated clustering from structure analyses for <i>K</i> = 2 to <i>K</i> = 7.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-07-12 01:58:28"}
• {"files"=>["https://ndownloader.figshare.com/files/1118480"], "description"=>"<p>Mean values of the distribution are 0.042 and 0.063, respectively, as indicated by the vertical dashed lines. Both distributions are highly leptokurtic (i.e. with kurtosis>3) and significantly different from one another (Kolmogorov-Smirnov test, <i>D</i> = 0.089, <i>P</i><10⁻⁵). Higher kurtosis is observed for the ECB/ABB <i>F</i>_ST distribution (kurtosis = 12.16) than for the ACB/ABB <i>F</i>_ST distribution (kurtosis = 11.46).</p>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "Evolutionary processes", "adaptation", "natural selection", "speciation", "population genetics", "Evolutionary ecology", "genetics", "Zoology", "Entomology", "estimates", "populations", "sampled", "aflp", "markers", "france", "pairs", "ecb", "abb", "china", "acb"], "article_id"=>745084, "categories"=>["Biological Sciences"], "users"=>["Hermine Alexandre", "Sergine Ponsard", "Denis Bourguet", "Renaud Vitalis", "Philippe Audiot", "Sandrine Cros-Arteil", "Réjane Streiff"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0069211.g004"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Distributions_of_F_ST_estimates_between_populations_sampled_on_different_host_plants_across_all_AFLP_markers_in_France_A_including_all_pairs_of_ECB_and_ABB_populations_and_in_China_B_including_all_pairs_of_ACB_and_ABB_populations_/745084", "title"=>"Distributions of <i>F</i>_ST estimates between populations sampled on different host plants, across all AFLP markers in France (A, including all pairs of ECB and ABB populations) and in China (B, including all pairs of ACB and ABB populations).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2013-07-12 01:58:28"}
• {"files"=>["https://ndownloader.figshare.com/files/1118481"], "description"=>"<p>The average of <i>α_i</i> over all these pairwise comparisons is also provided. These values are a proxy for the nature and strength of selection: positive <i>α_i</i> values suggest divergent selection while negative values suggest balancing selection. Population codes are defined in <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0069211#pone-0069211-t001\" target=\"_blank\">Table? 1</a>. Marker names are underlined (not underlined) for outliers detected at a 5% FDR (10%) threshold.</p>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "Evolutionary processes", "adaptation", "natural selection", "speciation", "population genetics", "Evolutionary ecology", "genetics", "Zoology", "Entomology", "locus-specific", "outlier", "locus", "inter-host", "comparisons", "china"], "article_id"=>745085, "categories"=>["Biological Sciences"], "users"=>["Hermine Alexandre", "Sergine Ponsard", "Denis Bourguet", "Renaud Vitalis", "Philippe Audiot", "Sandrine Cros-Arteil", "Réjane Streiff"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0069211.t003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Estimates_of_locus_specific_effects_i_from_B_aye_S_can_analyses_for_each_outlier_locus_in_all_the_inter_host_comparisons_where_it_was_detected_as_an_outlier_in_China_and_in_France_/745085", "title"=>"Estimates of locus-specific effects <i>α_i,</i> from BayeScan analyses, for each outlier locus in all the inter-host comparisons where it was detected as an outlier (in China and in France).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-07-12 01:58:28"}
• {"files"=>["https://ndownloader.figshare.com/files/1118482"], "description"=>"*<p>0.01<<i>P<</i>0.05 and *** <i>P</i><0.001.</p>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "Evolutionary processes", "adaptation", "natural selection", "speciation", "population genetics", "Evolutionary ecology", "genetics", "Zoology", "Entomology", "codes", "defined"], "article_id"=>745086, "categories"=>["Biological Sciences"], "users"=>["Hermine Alexandre", "Sergine Ponsard", "Denis Bourguet", "Renaud Vitalis", "Philippe Audiot", "Sandrine Cros-Arteil", "Réjane Streiff"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0069211.t002"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Pairwise_F_ST_estimates_Population_codes_are_defined_in_Table_1_/745086", "title"=>"Pairwise <i>F</i>_ST estimates. Population codes are defined in Table 1.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-07-12 01:58:28"}
• {"files"=>["https://ndownloader.figshare.com/files/1118483"], "description"=>"<p><i>N</i> is the number of sampled individuals. <i>PL</i> and % <i>PL</i> indicate the number and percentage of polymorphic loci, respectively. <i>H</i>_e (s.e.) is the expected heterozygozity and its standard error (s.e.).</p>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "Evolutionary processes", "adaptation", "natural selection", "speciation", "population genetics", "Evolutionary ecology", "genetics", "Zoology", "Entomology", "samples", "maize", "dicots", "france"], "article_id"=>745087, "categories"=>["Biological Sciences"], "users"=>["Hermine Alexandre", "Sergine Ponsard", "Denis Bourguet", "Renaud Vitalis", "Philippe Audiot", "Sandrine Cros-Arteil", "Réjane Streiff"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0069211.t001"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Details_on_the_Ostrinia_spp_samples_collected_on_maize_and_dicots_in_France_and_China_/745087", "title"=>"Details on the <i>Ostrinia</i> spp. samples collected on maize and dicots in France and China.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-07-12 01:58:28"}
• {"files"=>["https://ndownloader.figshare.com/files/1118484"], "description"=>"<p>Coancestry coefficients are computed according to <a href=\"http://www.plosone.org/article/info:doi/10.1371/journal.pone.0069211#pone.0069211-Lewis1\" target=\"_blank\">[54]</a>.</p>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "Evolutionary processes", "adaptation", "natural selection", "speciation", "population genetics", "Evolutionary ecology", "genetics", "Zoology", "Entomology", "outlier", "fdr", "french", "chinese"], "article_id"=>745088, "categories"=>["Biological Sciences"], "users"=>["Hermine Alexandre", "Sergine Ponsard", "Denis Bourguet", "Renaud Vitalis", "Philippe Audiot", "Sandrine Cros-Arteil", "Réjane Streiff"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0069211.t004"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_AMOVA_results_for_outlier_and_neutral_markers_with_FDR_fixed_at_5_and_10_in_French_and_Chinese_populations_/745088", "title"=>"AMOVA results for outlier and neutral markers, with FDR fixed at 5 and 10%, in French and Chinese populations.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-07-12 01:58:28"}
• {"files"=>["https://ndownloader.figshare.com/files/1118486", "https://ndownloader.figshare.com/files/1118487", "https://ndownloader.figshare.com/files/1118488"], "description"=>"<div><p>The genus <i>Ostrinia</i> includes two allopatric maize pests across Eurasia, namely the European corn borer (ECB, <i>O. nubilalis</i>) and the Asian corn borer (ACB, <i>O. furnacalis</i>). A third species, the Adzuki bean borer (ABB, <i>O. scapulalis</i>), occurs in sympatry with both the ECB and the ACB. The ABB mostly feeds on native dicots, which probably correspond to the ancestral host plant type for the genus <i>Ostrinia</i>. This situation offers the opportunity to characterize the two presumably independent adaptations or preadaptations to maize that occurred in the ECB and ACB. In the present study, we aimed at deciphering the genetic architecture of these two adaptations to maize, a monocot host plant recently introduced into Eurasia. To this end, we performed a genome scan analysis based on 684 AFLP markers in 12 populations of ECB, ACB and ABB. We detected 2 outlier AFLP loci when comparing French populations of the ECB and ABB, and 9 outliers when comparing Chinese populations of the ACB and ABB. These outliers were different in both countries, and we found no evidence of linkage disequilibrium between any two of them. These results suggest that adaptation or preadaptation to maize relies on a different genetic architecture in the ECB and ACB. However, this conclusion must be considered in light of the constraints inherent to genome scan approaches and of the intricate evolution of adaptation and reproductive isolation in the <i>Ostrinia</i> spp. complex.</p></div>", "links"=>[], "tags"=>["ecology", "Evolutionary biology", "Evolutionary processes", "adaptation", "natural selection", "speciation", "population genetics", "Evolutionary ecology", "genetics", "Zoology", "Entomology", "repeats", "exploring", "host-plant", "lepidopteran"], "article_id"=>745090, "categories"=>["Biological Sciences"], "users"=>["Hermine Alexandre", "Sergine Ponsard", "Denis Bourguet", "Renaud Vitalis", "Philippe Audiot", "Sandrine Cros-Arteil", "Réjane Streiff"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0069211.s001", "https://dx.doi.org/10.1371/journal.pone.0069211.s002", "https://dx.doi.org/10.1371/journal.pone.0069211.s003"], "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_When_History_Repeats_Itself_Exploring_the_Genetic_Architecture_of_Host_Plant_Adaptation_in_Two_Closely_Related_Lepidopteran_Species_/745090", "title"=>"When History Repeats Itself: Exploring the Genetic Architecture of Host-Plant Adaptation in Two Closely Related Lepidopteran Species", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-07-12 01:58:28"}

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Relative Metric

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F1000Prime