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• {"link"=>{"url"=>"http://www.citeulike.org/user/eliazoaria/article/12759332"}, "post_time"=>"2013-11-06 16:34:29", "tag"=>"no-tag", "linkout"=>{"type"=>"DOI", "url"=>"http://dx.doi.org/10.1371/journal.pone.0077733"}, "username"=>"eliazoaria", "article_id"=>"12759332"}

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{"title"=>"The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition", "type"=>"journal", "authors"=>[{"first_name"=>"Embriette R.", "last_name"=>"Hyde"}, {"first_name"=>"Daniel P.", "last_name"=>"Haarmann"}, {"first_name"=>"Aaron M.", "last_name"=>"Lynne"}, {"first_name"=>"Sibyl R.", "last_name"=>"Bucheli"}, {"first_name"=>"Joseph F.", "last_name"=>"Petrosino"}], "year"=>2013, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"1932-6203", "scopus"=>"2-s2.0-84896963128", "sgr"=>"84896963128", "pui"=>"563079832", "isbn"=>"1932-6203", "pmid"=>"24204941", "doi"=>"10.1371/journal.pone.0077733"}, "id"=>"c9b80429-91a3-3c7e-8c35-8dadc9f064cc", "abstract"=>"Human decomposition is a mosaic system with an intimate association between biotic and abiotic factors. Despite the integral role of bacteria in the decomposition process, few studies have catalogued bacterial biodiversity for terrestrial scenarios. To explore the microbiome of decomposition, two cadavers were placed at the Southeast Texas Applied Forensic Science facility and allowed to decompose under natural conditions. The bloat stage of decomposition, a stage easily identified in taphonomy and readily attributed to microbial physiology, was targeted. Each cadaver was sampled at two time points, at the onset and end of the bloat stage, from various body sites including internal locations. Bacterial samples were analyzed by pyrosequencing of the 16S rRNA gene. Our data show a shift from aerobic bacteria to anaerobic bacteria in all body sites sampled and demonstrate variation in community structure between bodies, between sample sites within a body, and between initial and end points of the bloat stage within a sample site. These data are best not viewed as points of comparison but rather additive data sets. While some species recovered are the same as those observed in culture-based studies, many are novel. Our results are preliminary and add to a larger emerging data set; a more comprehensive study is needed to further dissect the role of bacteria in human decomposition.", "link"=>"http://www.mendeley.com/research/living-dead-bacterial-community-structure-cadaver-onset-end-bloat-stage-decomposition", "reader_count"=>131, "reader_count_by_academic_status"=>{"Unspecified"=>3, "Professor > Associate Professor"=>3, "Researcher"=>26, "Student > Doctoral Student"=>8, "Student > Ph. D. Student"=>26, "Student > Postgraduate"=>4, "Student > Master"=>15, "Other"=>7, "Student > Bachelor"=>30, "Lecturer > Senior Lecturer"=>2, "Professor"=>7}, "reader_count_by_user_role"=>{"Unspecified"=>3, "Professor > Associate Professor"=>3, "Researcher"=>26, "Student > Doctoral Student"=>8, "Student > Ph. D. Student"=>26, "Student > Postgraduate"=>4, "Student > Master"=>15, "Other"=>7, "Student > Bachelor"=>30, "Lecturer > Senior Lecturer"=>2, "Professor"=>7}, "reader_count_by_subject_area"=>{"Unspecified"=>9, "Agricultural and Biological Sciences"=>72, "Arts and Humanities"=>3, "Chemistry"=>7, "Computer Science"=>1, "Engineering"=>1, "Environmental Science"=>2, "Biochemistry, Genetics and Molecular Biology"=>17, "Materials Science"=>1, "Mathematics"=>1, "Medicine and Dentistry"=>12, "Pharmacology, Toxicology and Pharmaceutical Science"=>1, "Psychology"=>1, "Social Sciences"=>2, "Immunology and Microbiology"=>1}, "reader_count_by_subdiscipline"=>{"Materials Science"=>{"Materials Science"=>1}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>12}, "Social Sciences"=>{"Social Sciences"=>2}, "Psychology"=>{"Psychology"=>1}, "Mathematics"=>{"Mathematics"=>1}, "Unspecified"=>{"Unspecified"=>9}, "Environmental Science"=>{"Environmental Science"=>2}, "Pharmacology, Toxicology and Pharmaceutical Science"=>{"Pharmacology, Toxicology and Pharmaceutical Science"=>1}, "Arts and Humanities"=>{"Arts and Humanities"=>3}, "Engineering"=>{"Engineering"=>1}, "Chemistry"=>{"Chemistry"=>7}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>72}, "Computer Science"=>{"Computer Science"=>1}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>17}}, "reader_count_by_country"=>{"Colombia"=>1, "Sweden"=>1, "Hungary"=>1, "United States"=>5, "Luxembourg"=>1, "South Africa"=>1, "Germany"=>1, "India"=>1}, "group_count"=>6}

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• 4135757
• 4466320
• 4589460
• 4764706
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• {"type"=>"COMMENT", "annotationUri"=>"info:doi/10.1371/annotation/c6a9e66b-4a77-4564-b482-94cbe064d719", "title"=>"Media Coverage for This Article", "body"=>"The following article represents some of the media coverage that has occurred for this paper:\n\nPublication: BioNews Tx \nTitle: “Bacterial communities shift during human decomposition, Sam Houston U & Baylor researchers reveal”\nhttp://bionews-tx.com/news/2013/11/01/bacterial-communities-shift-during-human-decomposition-sam-houston-u-baylor-researchers-reveal/\n\nPublication: Medical News Today \nTitle: “Human decomposition: study maps internal bacteria - Medical News Today”\nhttp://www.medicalnewstoday.com/articles/268190.php\n\nPublication: Microbe World \nTitle: “Human decomposition: study maps internal bacteria”\nhttp://www.microbeworld.org/component/jlibrary/?view=article&id=11389\n\nPublication: MicrobiologyBytes \nTitle: “Halloween Hous of Horror: Zombie Microbiome”\nhttp://www.microbiologybytes.com/blog/2013/10/31/halloween-house-horror-zombie-microbiome/\n\nPublication: RealClearScience \nTitle: “RealClearScience - Which Bacteria Decompose Your Bloated Body?”\nhttp://www.realclearscience.com/journal_club/2013/11/03/the_bacteria_that_decompose_your_dead_bloated_body_106743.html\n\nIf you see any additional coverage of this paper in the press or blogosphere, please reply to this thread and add the link to the article.", "isRemoved"=>false, "created"=>"2013-11-08T23:14:06Z", "lastModified"=>"2013-11-08T23:14:06Z", "creator"=>{"userId"=>"80539"}, "highlightedText"=>"", "competingInterestStatement"=>{"creatorWasPrompted"=>true, "hasCompetingInterests"=>true, "body"=>"PLOS ONE staff"}, "parentArticle"=>{"doi"=>"info:doi/10.1371/journal.pone.0077733", "state"=>"published", "journals"=>{"PLoSONE"=>{"journalKey"=>"PLoSONE", "eIssn"=>"1932-6203", "title"=>"PLOS ONE"}}}, "replyTreeSize"=>0, "mostRecentActivity"=>"2013-11-08T23:14:06Z", "replies"=>[]}

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• {"id"=>"395679585775284225", "text"=>"The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition http://t.co/HnFm0VP5Iy", "created_at"=>"2013-10-30T22:32:19Z", "user"=>"PLOSONE", "user_name"=>"PLOS ONE", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2429958559/mzjl6as5u2m09r2erof6_normal.jpeg"}
• {"id"=>"395680459188748288", "text"=>"Interesting paper,only for those that can stomach it!! Something for Halloween?! @PLOSONE The Living Dead:... http://t.co/eDYSify9nA", "created_at"=>"2013-10-30T22:35:47Z", "user"=>"VasilisLouca", "user_name"=>"Vasilis Louca", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000191059005/edf923c418ac2e8576044c0b6ba0d42f_normal.jpeg"}
• {"id"=>"395825583466094592", "text"=>"Happy Halloween! \nThe Living Dead: Bacterial Community Structure of a Cadaver During Decomposition \nhttp://t.co/wnIhDpb1VV via @MicroBytes", "created_at"=>"2013-10-31T08:12:27Z", "user"=>"DanielSprockett", "user_name"=>"Daniel Sprockett", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000432851504/2fadb6299b4a4e41c850c2e71ae8d782_normal.jpeg"}
• {"id"=>"395875497571520512", "text"=>"Per i fan di #halloween \"A cadaver is far from dead when viewed as an ecosystem\" http://t.co/TRLAiR90xC", "created_at"=>"2013-10-31T11:30:48Z", "user"=>"nrs74", "user_name"=>"nrs", "user_profile_image"=>"http://pbs.twimg.com/profile_images/1532712675/image_normal.jpg"}
• {"id"=>"395895441536974848", "text"=>"I respect other fields, but some science am happy not to do MT @PLOSONE Cadaver at the Onset and End of Bloat Stage http://t.co/0vV3vrWE4A", "created_at"=>"2013-10-31T12:50:03Z", "user"=>"BenBondLamberty", "user_name"=>"Ben Bond-Lamberty", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000379904772/a5a32945f329f35a345b28adfa8fe081_normal.png"}
• {"id"=>"395900641437958144", "text"=>"Good timing for Halloween #PLOSONE! The Living Dead: Bacterial Community Structure of a Cadaver during decomposition http://t.co/EgPXxuQzR0", "created_at"=>"2013-10-31T13:10:43Z", "user"=>"DrJCThrash", "user_name"=>"Cameron Thrash", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000647177995/fc1851ffbb60e136d8e45346627457aa_normal.png"}
• {"id"=>"395905065128452096", "text"=>"@BCMhouston scientists: The Living Dead: Bacterial community structure of a cadaver during decomposition #PLOSONE http://t.co/e60dKFVhxt", "created_at"=>"2013-10-31T13:28:17Z", "user"=>"ehollister02", "user_name"=>"Emily Hollister", "user_profile_image"=>"http://pbs.twimg.com/profile_images/1833880748/hotel1_normal.JPG"}
• {"id"=>"395905565680877568", "text"=>"BCM gets in on the decomposition #microbiome too.The Living Dead: Bacterial communities and cadavers http://t.co/e60dKFVhxt #PLOSONE", "created_at"=>"2013-10-31T13:30:17Z", "user"=>"ehollister02", "user_name"=>"Emily Hollister", "user_profile_image"=>"http://pbs.twimg.com/profile_images/1833880748/hotel1_normal.JPG"}
• {"id"=>"395949171938963456", "text"=>"Continuing with the Halloween theme, a @PLOSONE article on microbial communities and \"The Living Dead...\" http://t.co/KyQEJgFkaG", "created_at"=>"2013-10-31T16:23:33Z", "user"=>"promega", "user_name"=>"promega", "user_profile_image"=>"http://pbs.twimg.com/profile_images/3685877621/ffce58ac48c064e7ffa7084da1510506_normal.png"}
• {"id"=>"396004891652395008", "text"=>"Eww! \"The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End .. of Decomposition\"@GenomeWeb http://t.co/VzWps9Uecn", "created_at"=>"2013-10-31T20:04:58Z", "user"=>"ldemare", "user_name"=>"Laura DeMare", "user_profile_image"=>"http://pbs.twimg.com/profile_images/3050787440/1600862530e1339b6ab3953d50285854_normal.jpeg"}
• {"id"=>"397442677446152192", "text"=>"The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition http://t.co/CpilI01AzN", "created_at"=>"2013-11-04T19:18:13Z", "user"=>"PatrikD", "user_name"=>"Patrik D'haeseleer", "user_profile_image"=>"http://pbs.twimg.com/profile_images/1931899668/d_haeseleer_square_normal.jpg"}
• {"id"=>"397443217748008960", "text"=>"Giving me ideas for next year's @CountrCultrLabs Halloween project... Ok, perhaps not. :-D http://t.co/CpilI01AzN …", "created_at"=>"2013-11-04T19:20:21Z", "user"=>"PatrikD", "user_name"=>"Patrik D'haeseleer", "user_profile_image"=>"http://pbs.twimg.com/profile_images/1931899668/d_haeseleer_square_normal.jpg"}
• {"id"=>"397476854539354113", "text"=>"(How'd I miss this?!) The Living Dead: Bacterial Community Structure of a Cadaver -> http://t.co/zOeJn1lC5M", "created_at"=>"2013-11-04T21:34:01Z", "user"=>"EternalAcademe", "user_name"=>"Kayla I Miller", "user_profile_image"=>"http://pbs.twimg.com/profile_images/1393017718/monocleme_normal.jpg"}
• {"id"=>"397515906143621120", "text"=>"@HeloiseBreton MT @EternalAcademe: (How'd I miss this?!) The Living Dead: Bacterial Community Structure of a Cadaver http://t.co/lYiau9uD05", "created_at"=>"2013-11-05T00:09:12Z", "user"=>"KirkwoodLab", "user_name"=>"Andrea Kirkwood", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000676044289/bde52d70d8e2f4c88853553a59197a00_normal.jpeg"}
• {"id"=>"397676862026948609", "text"=>"The Living Dead: Bacterial Community Structure of a Cadaver... -- Inspiration for the TV Shows! @BONESonFOX @CSI_CBS http://t.co/oTKgl0Kc6u", "created_at"=>"2013-11-05T10:48:47Z", "user"=>"profearroyo", "user_name"=>"Monica M Arroyo", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000260732654/1da73a58bb6a23a172915cfe60a5ede3_normal.jpeg"}
• {"id"=>"397699080517730304", "text"=>"Published just in time for Halloween although I didn't see it in time! \"The Living Dead\" Cadaver microbiome @PLOSONE http://t.co/YaoecTwYbc", "created_at"=>"2013-11-05T12:17:04Z", "user"=>"chicaScientific", "user_name"=>"Irene Newton", "user_profile_image"=>"http://pbs.twimg.com/profile_images/3433686601/c99628c2da220c19e06350e2164bc79e_normal.jpeg"}
• {"id"=>"397789855884648448", "text"=>"#PLOSONE:The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decom http://t.co/ADswSm1BA4", "created_at"=>"2013-11-05T18:17:46Z", "user"=>"jliddil", "user_name"=>"JD LIDDIL", "user_profile_image"=>"http://pbs.twimg.com/profile_images/3530280541/1a97e5bc5732bb0165543d3e29a46b36_normal.jpeg"}
• {"id"=>"397800274082799616", "text"=>"Just no. @williaqj \"The Living Dead: Bacterial Community Structure of a Cadaver\" http://t.co/ulDT6LWrco", "created_at"=>"2013-11-05T18:59:10Z", "user"=>"tweetMadeleine", "user_name"=>"Madeleine Johnson", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2649148606/901311b147e531c73ec84a9ad809c06a_normal.jpeg"}
• {"id"=>"397926265031626752", "text"=>"I'll take \"Things I'm glad not to be studying for $1000, Alex\" http://t.co/lBYfXBNVES", "created_at"=>"2013-11-06T03:19:49Z", "user"=>"koitaxoumemesa", "user_name"=>"Steven Frese", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000538759378/afd20bd864b6ca5e43438c9c1ac1e9bd_normal.jpeg"}
• {"id"=>"398139089662136320", "text"=>"#PLOSONE: The Living Dead: Bacterial Community Structure of a Cadaver http://t.co/ura9lBNo4U", "created_at"=>"2013-11-06T17:25:30Z", "user"=>"CorrieMoreau", "user_name"=>"Corrie Moreau", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2339606967/jjj0u5j7qidi9jixtekb_normal.jpeg"}
• {"id"=>"398144014635237376", "text"=>"RT @CorrieMoreau: #PLOSONE: The Living Dead: Bacterial Community Structure of a Cadaver http://t.co/ura9lBNo4U", "created_at"=>"2013-11-06T17:45:04Z", "user"=>"jamoreno2010", "user_name"=>"José A. Moreno Muñoz", "user_profile_image"=>"http://pbs.twimg.com/profile_images/1534235488/1_Jos__Antonio_Moreno_Mu_oz_normal.jpg"}
• {"id"=>"398155676612296704", "text"=>"Post Halloween reading MT @CorrieMoreau: #PLOSONE: The Living Dead: #Microbiome of a Cadaver http://t.co/5kSSSbJVyx", "created_at"=>"2013-11-06T18:31:25Z", "user"=>"SahaSurya", "user_name"=>"Surya Saha", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2373458683/geyyrbspp0bgqxx2tc56_normal.jpeg"}
• {"id"=>"400901613381894144", "text"=>"PLOS ONE: The Living Dead: Bacterial Community Structure of Cadaver at Onset and End of Bloat Stage of Decomposition http://t.co/8UEH7fT6Ig", "created_at"=>"2013-11-14T08:22:47Z", "user"=>"mjpallen", "user_name"=>"Mark Pallen", "user_profile_image"=>"http://pbs.twimg.com/profile_images/1397170279/RGE_cover_tilted_normal.jpg"}
• {"id"=>"401299564872736768", "text"=>"There's a reason this was released around Halloween: http://t.co/ai8qq7CI0f #cadaver", "created_at"=>"2013-11-15T10:44:06Z", "user"=>"BiofilmBob", "user_name"=>"Robert Shields", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000444185473/3c3dd829138a48083ffc544f0585b0db_normal.jpeg"}
• {"id"=>"411553678458245121", "text"=>"The Living Dead: Bacterial Community Structure of a Cadaver http://t.co/jXvPBKonS0", "created_at"=>"2013-12-13T17:50:17Z", "user"=>"paulcarald", "user_name"=>"Paúl Cárdenas", "user_profile_image"=>"http://pbs.twimg.com/profile_images/3710196117/754c17032a606962a326838fc07488a5_normal.jpeg"}
• {"id"=>"519565809564135424", "text"=>"IALab\nBacterial Experiment during human decomposition\nhttp://t.co/NgbOOqkIFQ", "created_at"=>"2014-10-07T19:11:56Z", "user"=>"wvcamilleri", "user_name"=>"William Victor", "user_profile_image"=>"http://pbs.twimg.com/profile_images/517055999702614016/1nNVHcUY_normal.jpeg"}
• {"id"=>"521423292880936960", "text"=>"!!! The living dead: bacterial community structure of a cadaver at the onset and end of the stage of decomposition \nhttp://t.co/ubxEPirxlH", "created_at"=>"2014-10-12T22:12:55Z", "user"=>"Taniomys", "user_name"=>"Tania Gtz", "user_profile_image"=>"http://pbs.twimg.com/profile_images/510491341969563648/vulOLRgp_normal.jpeg"}
• {"id"=>"524219236957577218", "text"=>"( pour les intéressés : http://t.co/jelIlOyQrb )", "created_at"=>"2014-10-20T15:23:00Z", "user"=>"Lnss", "user_name"=>"Eliness", "user_profile_image"=>"http://pbs.twimg.com/profile_images/468143761/avatar_normal.jpg"}
• {"id"=>"527172995823857664", "text"=>"Further reading: Bacterial Community Structure of a Cadaver at the Onset and the End of Bloat Stage of Decomposition http://t.co/DesQE749or", "created_at"=>"2014-10-28T19:00:11Z", "user"=>"Cesar_F1000", "user_name"=>"Cesar A. Berrios", "user_profile_image"=>"http://pbs.twimg.com/profile_images/503018143493931008/Q-T-juYw_normal.jpeg"}
• {"id"=>"656185955162820608", "text"=>".@sarahmhird and also https://t.co/tE9xXEuKU2", "created_at"=>"2015-10-19T19:11:37Z", "user"=>"phylogenomics", "user_name"=>"Jonathan Eisen", "user_profile_image"=>"http://pbs.twimg.com/profile_images/477910611431391232/CbaIyzcr_normal.jpeg"}

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Figshare

• {"files"=>["https://ndownloader.figshare.com/files/4440469"], "description"=>"<p>(A) and humidity (B) for September 2011 (sampling of STAFS 2011-006) and November 2011 (sampling of STAFS 2011-016).</p>", "links"=>[], "tags"=>["cadaver", "Southeast Texas Applied Forensic Science facility", "body sites", "bacteria", "16 S rRNA gene", "sample", "Decomposition Human decomposition", "role", "bloat stage", "additive data sets", "Bacterial Community Structure"], "article_id"=>837741, "categories"=>["Microbiology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Science Policy"], "users"=>["Embriette R. Hyde", "Daniel P. Haarmann", "Aaron M. Lynne", "Sibyl R. Bucheli", "Joseph F. Petrosino"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0077733.g001"], "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_and_humidity_B_for_September_2011_sampling_of_STAFS_2011_006_and_November_2011_sampling_of_STAFS_2011_016_/837741", "title"=>"(A) and humidity (B) for September 2011 (sampling of STAFS 2011-006) and November 2011 (sampling of STAFS 2011-016).", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-10-30 15:28:36"}
• {"files"=>["https://ndownloader.figshare.com/files/4440481"], "description"=>"<p>Stacked bar charts illustrate the relative abundances of phyla present from each individual sample collected from STAFS 2011-006.</p>", "links"=>[], "tags"=>["cadaver", "Southeast Texas Applied Forensic Science facility", "body sites", "bacteria", "16 S rRNA gene", "sample", "Decomposition Human decomposition", "role", "bloat stage", "additive data sets", "Bacterial Community Structure"], "article_id"=>837745, "categories"=>["Microbiology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Science Policy"], "users"=>["Embriette R. Hyde", "Daniel P. Haarmann", "Aaron M. Lynne", "Sibyl R. Bucheli", "Joseph F. Petrosino"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0077733.g005"], "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_relative_abundances_of_phyla_present_differ_between_sample_sites_in_STAFS_2011_006_/837745", "title"=>"The relative abundances of phyla present differ between sample sites in STAFS 2011-006.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-10-30 15:28:36"}
• {"files"=>["https://ndownloader.figshare.com/files/4440475"], "description"=>"<p>A rarefaction curve plotting the average number of OTUs over the average number of sequences sampled per body site sampled shows that microbiome richness differs widely among different body site samples. Error bars represent the standard error of the mean. The legend indicates the body site and body identification number for each sample.</p>", "links"=>[], "tags"=>["cadaver", "Southeast Texas Applied Forensic Science facility", "body sites", "bacteria", "16 S rRNA gene", "sample", "Decomposition Human decomposition", "role", "bloat stage", "additive data sets", "Bacterial Community Structure"], "article_id"=>837743, "categories"=>["Microbiology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Science Policy"], "users"=>["Embriette R. Hyde", "Daniel P. Haarmann", "Aaron M. Lynne", "Sibyl R. Bucheli", "Joseph F. Petrosino"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0077733.g003"], "stats"=>{"downloads"=>1, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Microbiome_richness_varies_widely_across_cadaver_body_sites_/837743", "title"=>"Microbiome richness varies widely across cadaver body sites.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-10-30 15:28:36"}
• {"files"=>["https://ndownloader.figshare.com/files/4440478"], "description"=>"<p>The first two principal coordinates (PC) of Unweighted (A) and Weighted (B) UniFrac-based principal coordinate analysis are plotted, and the percent variance explained by each PC is indicated in parenthesis.</p>", "links"=>[], "tags"=>["cadaver", "Southeast Texas Applied Forensic Science facility", "body sites", "bacteria", "16 S rRNA gene", "sample", "Decomposition Human decomposition", "role", "bloat stage", "additive data sets", "Bacterial Community Structure"], "article_id"=>837744, "categories"=>["Microbiology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Science Policy"], "users"=>["Embriette R. Hyde", "Daniel P. Haarmann", "Aaron M. Lynne", "Sibyl R. Bucheli", "Joseph F. Petrosino"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0077733.g004"], "stats"=>{"downloads"=>0, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Principal_coordinate_analysis_reveals_separation_of_communities_based_on_location_in_the_gastrointestinal_tract_/837744", "title"=>"Principal coordinate analysis reveals separation of communities based on location in the gastrointestinal tract.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-10-30 15:28:36"}
• {"files"=>["https://ndownloader.figshare.com/files/4440472"], "description"=>"<p>Bodies were samples at the start of decomposition and at a point determined to be almost the end of the bloat stage. DD =  ((Maximum Temperature + Minimum Temperature)/2)-base temperature; ADD =  (DDx+DDx+1).</p>", "links"=>[], "tags"=>["cadaver", "Southeast Texas Applied Forensic Science facility", "body sites", "bacteria", "16 S rRNA gene", "sample", "Decomposition Human decomposition", "role", "bloat stage", "additive data sets", "Bacterial Community Structure"], "article_id"=>837742, "categories"=>["Microbiology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Science Policy"], "users"=>["Embriette R. Hyde", "Daniel P. Haarmann", "Aaron M. Lynne", "Sibyl R. Bucheli", "Joseph F. Petrosino"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0077733.g002"], "stats"=>{"downloads"=>0, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Accumulated_degree_hours_calculated_at_a_base_of_4oC_for_STAFS_2011_006_and_STAFS_2011_016_/837742", "title"=>"Accumulated degree hours calculated at a base of 4oC for STAFS 2011-006 and STAFS 2011-016.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-10-30 15:28:36"}
• {"files"=>["https://ndownloader.figshare.com/files/4440490"], "description"=>"<p>The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition</p> - Table 1", "links"=>[], "tags"=>["cadaver", "Southeast Texas Applied Forensic Science facility", "body sites", "bacteria", "16 S rRNA gene", "sample", "Decomposition Human decomposition", "role", "bloat stage", "additive data sets", "Bacterial Community Structure"], "article_id"=>2751703, "categories"=>["Microbiology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Science Policy"], "users"=>["Embriette R. Hyde", "Daniel P. Haarmann", "Aaron M. Lynne", "Sibyl R. Bucheli", "Joseph F. Petrosino"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0077733.t001", "stats"=>{"downloads"=>0, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/The_Living_Dead_Bacterial_Community_Structure_of_a_Cadaver_at_the_Onset_and_End_of_the_Bloat_Stage_of_Decomposition_Table_1/2751703", "title"=>"The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition - Table 1", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2013-10-30 15:28:36"}
• {"files"=>["https://ndownloader.figshare.com/files/4440466"], "description"=>"<div><p>Human decomposition is a mosaic system with an intimate association between biotic and abiotic factors. Despite the integral role of bacteria in the decomposition process, few studies have catalogued bacterial biodiversity for terrestrial scenarios. To explore the microbiome of decomposition, two cadavers were placed at the Southeast Texas Applied Forensic Science facility and allowed to decompose under natural conditions. The bloat stage of decomposition, a stage easily identified in taphonomy and readily attributed to microbial physiology, was targeted. Each cadaver was sampled at two time points, at the onset and end of the bloat stage, from various body sites including internal locations. Bacterial samples were analyzed by pyrosequencing of the 16S rRNA gene. Our data show a shift from aerobic bacteria to anaerobic bacteria in all body sites sampled and demonstrate variation in community structure between bodies, between sample sites within a body, and between initial and end points of the bloat stage within a sample site. These data are best not viewed as points of comparison but rather additive data sets. While some species recovered are the same as those observed in culture-based studies, many are novel. Our results are preliminary and add to a larger emerging data set; a more comprehensive study is needed to further dissect the role of bacteria in human decomposition.</p></div>", "links"=>[], "tags"=>["cadaver", "Southeast Texas Applied Forensic Science facility", "body sites", "bacteria", "16 S rRNA gene", "sample", "Decomposition Human decomposition", "role", "bloat stage", "additive data sets", "Bacterial Community Structure"], "article_id"=>837747, "categories"=>["Microbiology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Science Policy"], "users"=>["Embriette R. Hyde", "Daniel P. Haarmann", "Aaron M. Lynne", "Sibyl R. Bucheli", "Joseph F. Petrosino"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0077733.s001"], "stats"=>{"downloads"=>5, "page_views"=>25, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_Living_Dead_Bacterial_Community_Structure_of_a_Cadaver_at_the_Onset_and_End_of_the_Bloat_Stage_of_Decomposition_/837747", "title"=>"The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-10-30 15:28:36"}
• {"files"=>["https://ndownloader.figshare.com/files/4440484"], "description"=>"<p>Stacked bar charts illustrate the relative abundances of phyla present from each individual sample collected from STAFS 2011-016.</p>", "links"=>[], "tags"=>["cadaver", "Southeast Texas Applied Forensic Science facility", "body sites", "bacteria", "16 S rRNA gene", "sample", "Decomposition Human decomposition", "role", "bloat stage", "additive data sets", "Bacterial Community Structure"], "article_id"=>837746, "categories"=>["Microbiology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Science Policy"], "users"=>["Embriette R. Hyde", "Daniel P. Haarmann", "Aaron M. Lynne", "Sibyl R. Bucheli", "Joseph F. Petrosino"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0077733.g006"], "stats"=>{"downloads"=>1, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_The_relative_abundances_of_phyla_present_differ_between_sample_sites_in_STAFS_2011_016_/837746", "title"=>"The relative abundances of phyla present differ between sample sites in STAFS 2011-016.", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2013-10-30 15:28:36"}

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Relative Metric

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