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{"title"=>"A phylogenetic re-analysis of groupers with applications for ciguatera fish poisoning", "type"=>"journal", "authors"=>[{"first_name"=>"Charlotte", "last_name"=>"Schoelinck", "scopus_author_id"=>"37089158100"}, {"first_name"=>"Damien D.", "last_name"=>"Hinsinger", "scopus_author_id"=>"55138383300"}, {"first_name"=>"Agnès", "last_name"=>"Dettaï", "scopus_author_id"=>"9437531000"}, {"first_name"=>"Corinne", "last_name"=>"Cruaud", "scopus_author_id"=>"6701718677"}, {"first_name"=>"Jean Lou", "last_name"=>"Justine", "scopus_author_id"=>"7003751331"}], "year"=>2014, "source"=>"PLoS ONE", "identifiers"=>{"scopus"=>"2-s2.0-84905493069", "sgr"=>"84905493069", "issn"=>"19326203", "doi"=>"10.1371/journal.pone.0098198", "pmid"=>"25093850", "pui"=>"373700817"}, "id"=>"3c292189-b243-31f0-9547-d7cd9b585442", "abstract"=>"BACKGROUND Ciguatera fish poisoning (CFP) is a significant public health problem due to dinoflagellates. It is responsible for one of the highest reported incidence of seafood-borne illness and Groupers are commonly reported as a source of CFP due to their position in the food chain. With the role of recent climate change on harmful algal blooms, CFP cases might become more frequent and more geographically widespread. Since there is no appropriate treatment for CFP, the most efficient solution is to regulate fish consumption. Such a strategy can only work if the fish sold are correctly identified, and it has been repeatedly shown that misidentifications and species substitutions occur in fish markets. METHODS We provide here both a DNA-barcoding reference for groupers, and a new phylogenetic reconstruction based on five genes and a comprehensive taxonomical sampling. We analyse the correlation between geographic range of species and their susceptibility to ciguatera accumulation, and the co-occurrence of ciguatoxins in closely related species, using both character mapping and statistical methods. RESULTS Misidentifications were encountered in public databases, precluding accurate species identifications. Epinephelinae now includes only twelve genera (vs. 15 previously). Comparisons with the ciguatera incidences show that in some genera most species are ciguateric, but statistical tests display only a moderate correlation with the phylogeny. Atlantic species were rarely contaminated, with ciguatera occurrences being restricted to the South Pacific. CONCLUSIONS The recent changes in classification based on the reanalyses of the relationships within Epinephelidae have an impact on the interpretation of the ciguatera distribution in the genera. In this context and to improve the monitoring of fish trade and safety, we need to obtain extensive data on contamination at the species level. Accurate species identifications through DNA barcoding are thus an essential tool in controlling CFP since meal remnants in CFP cases can be easily identified with molecular tools.", "link"=>"http://www.mendeley.com/research/phylogenetic-reanalysis-groupers-applications-ciguatera-fish-poisoning", "reader_count"=>26, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Professor > Associate Professor"=>1, "Researcher"=>7, "Student > Ph. D. Student"=>3, "Student > Master"=>8, "Other"=>1, "Student > Bachelor"=>2, "Professor"=>2}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Professor > Associate Professor"=>1, "Researcher"=>7, "Student > Ph. D. Student"=>3, "Student > Master"=>8, "Other"=>1, "Student > Bachelor"=>2, "Professor"=>2}, "reader_count_by_subject_area"=>{"Unspecified"=>3, "Environmental Science"=>5, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>11, "Medicine and Dentistry"=>2, "Veterinary Science and Veterinary Medicine"=>1, "Physics and Astronomy"=>1, "Chemistry"=>1, "Social Sciences"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>2}, "Chemistry"=>{"Chemistry"=>1}, "Social Sciences"=>{"Social Sciences"=>1}, "Physics and Astronomy"=>{"Physics and Astronomy"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>11}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>3}, "Environmental Science"=>{"Environmental Science"=>5}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>1}}, "reader_count_by_country"=>{"United States"=>1, "France"=>1}, "group_count"=>0}

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• http://doi.org/10.1371/journal.pone.0159886
• http://doi.org/10.1016/j.actao.2015.10.009
• http://doi.org/10.3354/meps11771
• http://doi.org/10.1643/CI-18-055
• http://doi.org/10.1007/s12526-020-01051-1
• http://doi.org/10.3109/19401736.2015.1137899
• http://doi.org/10.1051/parasite/2015005
• http://doi.org/10.3109/19401736.2015.1089560
• http://doi.org/10.1051/parasite/2016008
• http://doi.org/10.1007/s11230-015-9610-z
• http://doi.org/10.1016/j.envres.2020.109111
• http://doi.org/10.7717/peerj.2233
• http://doi.org/10.1038/s41598-018-29049-7

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• {"title"=>"DNA barcoding", "url"=>"http://en.wikipedia.org/wiki/DNA_barcoding", "timestamp"=>"2019-03-06T13:09:58Z"}
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• {"title"=>"Ciguatera", "url"=>"http://pl.wikipedia.org/wiki/Ciguatera", "timestamp"=>"2019-02-01T19:59:15Z"}
• {"title"=>"Epinephelinae", "url"=>"http://hu.wikipedia.org/wiki/Epinephelinae", "timestamp"=>"2018-07-13T16:50:16Z"}

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Figshare

• {"files"=>["https://ndownloader.figshare.com/files/1624438"], "description"=>"<p>Bayesian inference phylogram obtained from phylogenetic analyses of the dataset 1 (A) based on the concatenation of three genes, COI, 16S and TMO-4C4, and the dataset 2 (B) obtained with the concatenation of five genes, COI, 16S, TMO-4C4, Rhodopsin and Pkd1, both under the GTR + I + Γ model. Epinephelidae are highlighted in colour (pink and blue). Each sub families are shown in alternate blue and pink colours. Values at nodes indicate Bayesian posterior probabilities (PP) and maximum likelihood bootstrap percentages (BP). Black circles indicate nodes supported by posterior probability ≥95% and ML bootstrap probability ≥75%.</p>", "links"=>[], "tags"=>["Evolutionary biology", "Evolutionary systematics", "phylogenetics", "Animal phylogenetics", "Marine biology", "taxonomy", "Animal taxonomy", "toxicology", "Toxic agents", "Zoology", "Fish biology", "health care", "Environmental health", "Socioeconomic aspects of health", "Public and occupational health", "Science policy and economics", "relationships"], "article_id"=>1130050, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Charlotte Schoelinck", "Damien D. Hinsinger", "Agnes Dettai", "Corinne Cruaud", "Jean-Lou Justine"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098198.g001", "stats"=>{"downloads"=>2, "page_views"=>52, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_relationships_within_the_Epinephelidae_/1130050", "title"=>"Phylogenetic relationships within the Epinephelidae.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-08-05 06:52:13"}
• {"files"=>["https://ndownloader.figshare.com/files/1624440"], "description"=>"<p>Bayesian cladogram of the COI dataset with maximum likelihood estimates of ancestral CFP states. Pie charts correspond to average likelihoods for each state. Percentage values are given for nodes of interest.</p>", "links"=>[], "tags"=>["Evolutionary biology", "Evolutionary systematics", "phylogenetics", "Animal phylogenetics", "Marine biology", "taxonomy", "Animal taxonomy", "toxicology", "Toxic agents", "Zoology", "Fish biology", "health care", "Environmental health", "Socioeconomic aspects of health", "Public and occupational health", "Science policy and economics", "ciguatera", "poisoning", "reconstruction"], "article_id"=>1130052, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Charlotte Schoelinck", "Damien D. Hinsinger", "Agnes Dettai", "Corinne Cruaud", "Jean-Lou Justine"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098198.g002", "stats"=>{"downloads"=>1, "page_views"=>54, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Ancestral_ciguatera_fish_poisoning_CFP_reconstruction_of_Epinephelidae_/1130052", "title"=>"Ancestral ciguatera fish poisoning (CFP) reconstruction of Epinephelidae.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-08-05 06:52:13"}
• {"files"=>["https://ndownloader.figshare.com/files/1624441"], "description"=>"<p>(¹) Fish specimen collected at Nouméa fish market or obtained through colleagues, (*) new sequences, (_b) BOLD accession number, (_v) sequence corresponds to voucher indicated in Table.</p>", "links"=>[], "tags"=>["Evolutionary biology", "Evolutionary systematics", "phylogenetics", "Animal phylogenetics", "Marine biology", "taxonomy", "Animal taxonomy", "toxicology", "Toxic agents", "Zoology", "Fish biology", "health care", "Environmental health", "Socioeconomic aspects of health", "Public and occupational health", "Science policy and economics", "specimen", "vouchers", "localities", "accession"], "article_id"=>1130053, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Charlotte Schoelinck", "Damien D. Hinsinger", "Agnes Dettai", "Corinne Cruaud", "Jean-Lou Justine"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098198.t001", "stats"=>{"downloads"=>10, "page_views"=>82, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_List_of_fish_species_specimen_vouchers_localities_and_sequence_accession_numbers_/1130053", "title"=>"List of fish species, specimen vouchers localities and sequence accession numbers.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-08-05 06:52:13"}
• {"files"=>["https://ndownloader.figshare.com/files/1624442"], "description"=>"<p>Dataset composition, marker size and information.</p>", "links"=>[], "tags"=>["Evolutionary biology", "Evolutionary systematics", "phylogenetics", "Animal phylogenetics", "Marine biology", "taxonomy", "Animal taxonomy", "toxicology", "Toxic agents", "Zoology", "Fish biology", "health care", "Environmental health", "Socioeconomic aspects of health", "Public and occupational health", "Science policy and economics"], "article_id"=>1130054, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Charlotte Schoelinck", "Damien D. Hinsinger", "Agnes Dettai", "Corinne Cruaud", "Jean-Lou Justine"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098198.t003", "stats"=>{"downloads"=>7, "page_views"=>31, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Dataset_composition_marker_size_and_information_/1130054", "title"=>"Dataset composition, marker size and information.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-08-05 06:52:13"}
• {"files"=>["https://ndownloader.figshare.com/files/1624443"], "description"=>"<p>List of the primers used in this study; T° of hyb: temperature of hybridisation used to amplify the marker.</p>", "links"=>[], "tags"=>["Evolutionary biology", "Evolutionary systematics", "phylogenetics", "Animal phylogenetics", "Marine biology", "taxonomy", "Animal taxonomy", "toxicology", "Toxic agents", "Zoology", "Fish biology", "health care", "Environmental health", "Socioeconomic aspects of health", "Public and occupational health", "Science policy and economics", "primers", "hybridisation"], "article_id"=>1130055, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Charlotte Schoelinck", "Damien D. Hinsinger", "Agnes Dettai", "Corinne Cruaud", "Jean-Lou Justine"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098198.t002", "stats"=>{"downloads"=>13, "page_views"=>28, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_List_of_the_primers_used_in_this_study_T_176_of_hyb_temperature_of_hybridisation_used_to_amplify_the_marker_/1130055", "title"=>"List of the primers used in this study; T° of hyb: temperature of hybridisation used to amplify the marker.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-08-05 06:52:13"}
• {"files"=>["https://ndownloader.figshare.com/files/1624444"], "description"=>"<p>Association index (AI), parsimony score (PS), and monophyletic clade (MC) and their significance. While AI and PS indices test for the overall phylogeny and all the characters at once, MC is drawn to specifically quantify the phylogenetic signal for each specific character (occurrence of ciguatera contamination). Asterisk indicates significant values (*: p≤0.1; **: p≤0.05).</p>", "links"=>[], "tags"=>["Evolutionary biology", "Evolutionary systematics", "phylogenetics", "Animal phylogenetics", "Marine biology", "taxonomy", "Animal taxonomy", "toxicology", "Toxic agents", "Zoology", "Fish biology", "health care", "Environmental health", "Socioeconomic aspects of health", "Public and occupational health", "Science policy and economics", "bayesian", "phylogeny-trait"], "article_id"=>1130056, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Charlotte Schoelinck", "Damien D. Hinsinger", "Agnes Dettai", "Corinne Cruaud", "Jean-Lou Justine"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098198.t004", "stats"=>{"downloads"=>1, "page_views"=>87, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Results_of_the_Bayesian_phylogeny_trait_association_/1130056", "title"=>"Results of the Bayesian phylogeny-trait association.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-08-05 06:52:13"}
• {"files"=>["https://ndownloader.figshare.com/files/1624448"], "description"=>"<div><p>Background</p><p>Ciguatera fish poisoning (CFP) is a significant public health problem due to dinoflagellates. It is responsible for one of the highest reported incidence of seafood-borne illness and Groupers are commonly reported as a source of CFP due to their position in the food chain. With the role of recent climate change on harmful algal blooms, CFP cases might become more frequent and more geographically widespread. Since there is no appropriate treatment for CFP, the most efficient solution is to regulate fish consumption. Such a strategy can only work if the fish sold are correctly identified, and it has been repeatedly shown that misidentifications and species substitutions occur in fish markets.</p><p>Methods</p><p>We provide here both a DNA-barcoding reference for groupers, and a new phylogenetic reconstruction based on five genes and a comprehensive taxonomical sampling. We analyse the correlation between geographic range of species and their susceptibility to ciguatera accumulation, and the co-occurrence of ciguatoxins in closely related species, using both character mapping and statistical methods.</p><p>Results</p><p>Misidentifications were encountered in public databases, precluding accurate species identifications. Epinephelinae now includes only twelve genera (vs. 15 previously). Comparisons with the ciguatera incidences show that in some genera most species are ciguateric, but statistical tests display only a moderate correlation with the phylogeny. Atlantic species were rarely contaminated, with ciguatera occurrences being restricted to the South Pacific.</p><p>Conclusions</p><p>The recent changes in classification based on the reanalyses of the relationships within Epinephelidae have an impact on the interpretation of the ciguatera distribution in the genera. In this context and to improve the monitoring of fish trade and safety, we need to obtain extensive data on contamination at the species level. Accurate species identifications through DNA barcoding are thus an essential tool in controlling CFP since meal remnants in CFP cases can be easily identified with molecular tools.</p></div>", "links"=>[], "tags"=>["Evolutionary biology", "Evolutionary systematics", "phylogenetics", "Animal phylogenetics", "Marine biology", "taxonomy", "Animal taxonomy", "toxicology", "Toxic agents", "Zoology", "Fish biology", "health care", "Environmental health", "Socioeconomic aspects of health", "Public and occupational health", "Science policy and economics", "phylogenetic", "re-analysis", "groupers", "applications", "ciguatera"], "article_id"=>1130060, "categories"=>["Biological Sciences", "Science Policy"], "users"=>["Charlotte Schoelinck", "Damien D. Hinsinger", "Agnes Dettai", "Corinne Cruaud", "Jean-Lou Justine"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098198", "stats"=>{"downloads"=>4, "page_views"=>40, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_A_Phylogenetic_Re_Analysis_of_Groupers_with_Applications_for_Ciguatera_Fish_Poisoning_/1130060", "title"=>"A Phylogenetic Re-Analysis of Groupers with Applications for Ciguatera Fish Poisoning", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-08-05 06:52:13"}

PMC Usage Stats | Further Information

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Relative Metric

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F1000Prime