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{"title"=>"Impact of experimental human pneumococcal carriage on nasopharyngeal bacterial densities in healthy adults", "type"=>"journal", "authors"=>[{"first_name"=>"Joshua R.", "last_name"=>"Shak", "scopus_author_id"=>"24068230200"}, {"first_name"=>"Amelieke J.H.", "last_name"=>"Cremers", "scopus_author_id"=>"56003447600"}, {"first_name"=>"Jenna F.", "last_name"=>"Gritzfeld", "scopus_author_id"=>"37115591600"}, {"first_name"=>"Marien I.", "last_name"=>"De Jonge", "scopus_author_id"=>"55734436600"}, {"first_name"=>"Peter W.M.", "last_name"=>"Hermans", "scopus_author_id"=>"7101909804"}, {"first_name"=>"Jorge E.", "last_name"=>"Vidal", "scopus_author_id"=>"23010621900"}, {"first_name"=>"Keith P.", "last_name"=>"Klugman", "scopus_author_id"=>"56042384100"}, {"first_name"=>"Stephen B.", "last_name"=>"Gordon", "scopus_author_id"=>"7401829209"}], "year"=>2014, "source"=>"PLoS ONE", "identifiers"=>{"sgr"=>"84902593741", "pui"=>"373337797", "doi"=>"10.1371/journal.pone.0098829", "pmid"=>"24915552", "scopus"=>"2-s2.0-84902593741", "issn"=>"19326203", "isbn"=>"1932-6203"}, "id"=>"edb87711-c836-3902-a80c-4659e27d950c", "abstract"=>"Colonization of the nasopharynx by Streptococcus pneumoniae is a necessary precursor to pneumococcal diseases that result in morbidity and mortality worldwide. The nasopharynx is also host to other bacterial species, including the common pathogens Staphylococcus aureus, Haemophilus influenzae, and Moraxella catarrhalis. To better understand how these bacteria change in relation to pneumococcal colonization, we used species-specific quantitative PCR to examine bacterial densities in 52 subjects 7 days before, and 2, 7, and 14 days after controlled inoculation of healthy human adults with S. pneumoniae serotype 6B. Overall, 33 (63%) of subjects carried S. pneumoniae post-inoculation. The baseline presence and density of S. aureus, H. influenzae, and M. catarrhalis were not statistically associated with likelihood of successful pneumococcal colonization at this study's sample size, although a lower rate of pneumococcal colonization in the presence of S. aureus (7/14) was seen compared to that in the presence of H. influenzae (12/16). Among subjects colonized with pneumococci, the number also carrying either H. influenzae or S. aureus fell during the study and at 14 days post-inoculation, the proportion carrying S. aureus was significantly lower among those who were colonized with S. pneumoniae (p = 0.008) compared to non-colonized subjects. These data on bacterial associations are the first to be reported surrounding experimental human pneumococcal colonization and show that co-colonizing effects are likely subtle rather than absolute.", "link"=>"http://www.mendeley.com/research/impact-experimental-human-pneumococcal-carriage-nasopharyngeal-bacterial-densities-healthy-adults", "reader_count"=>20, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Researcher"=>5, "Student > Ph. D. Student"=>4, "Student > Postgraduate"=>4, "Student > Master"=>3, "Other"=>1, "Student > Bachelor"=>1, "Lecturer"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Researcher"=>5, "Student > Ph. D. Student"=>4, "Student > Postgraduate"=>4, "Student > Master"=>3, "Other"=>1, "Student > Bachelor"=>1, "Lecturer"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Biochemistry, Genetics and Molecular Biology"=>1, "Medicine and Dentistry"=>12, "Agricultural and Biological Sciences"=>2, "Immunology and Microbiology"=>4}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>12}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>4}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>2}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>1}}, "reader_count_by_country"=>{"Spain"=>1}, "group_count"=>4}

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• http://doi.org/10.1128/AEM.00953-17
• http://doi.org/10.1128/JB.00474-19
• http://doi.org/10.1002/1873-3468.12455
• http://doi.org/10.15172/pneu.2015.6/520
• http://doi.org/10.1007/s10522-015-9614-8
• http://doi.org/10.1371/journal.pone.0129199
• http://doi.org/10.1016/j.thromres.2016.06.016
• http://doi.org/10.3390/ijms20174220
• http://doi.org/10.1186/s12879-016-1454-x
• http://doi.org/10.3389/fcimb.2016.00104
• http://doi.org/10.1080/21645515.2015.1081321

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Figshare

• {"files"=>["https://ndownloader.figshare.com/files/1528398"], "description"=>"a<p>All probes were labeled with Hex at 5′-end and Black Hole Quencher (BHQ) at the 3′-end with the exception for hpdPr762, which was labeled with BHQ at an internal “T” and SpC6 at the 3′-end.</p>", "links"=>[], "tags"=>["ecology", "microbial ecology", "microbiology", "bacteriology", "Gram positive bacteria", "Medical microbiology", "Microbial pathogens", "Bacterial pathogens", "staphylococcus", "Staphylococcus aureus", "streptococcus", "pneumococcus", "Haemophilus influenzae", "Infectious diseases", "Bacterial diseases", "Pathology and laboratory medicine", "pathogenesis", "Host-pathogen interactions", "Pulmonology", "Respiratory infections", "Upper respiratory tract infections", "probes", "qpcr"], "article_id"=>1051957, "categories"=>["Biological Sciences"], "users"=>["Joshua R. Shak", "Amelieke J. H. Cremers", "Jenna F. Gritzfeld", "Marien I. de Jonge", "Peter W. M. Hermans", "Jorge E. Vidal", "Keith P. Klugman", "Stephen B. Gordon"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098829.t001", "stats"=>{"downloads"=>6, "page_views"=>24, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Primers_and_probes_used_for_qPCR_assays_/1051957", "title"=>"Primers and probes used for qPCR assays.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-06-10 02:49:20"}
• {"files"=>["https://ndownloader.figshare.com/files/1528397"], "description"=>"<p>Contingency tables of carriage of Hi, Sa, and Mc at baseline against colonization with Sp post-inoculation for 52 subjects.</p>", "links"=>[], "tags"=>["ecology", "microbial ecology", "microbiology", "bacteriology", "Gram positive bacteria", "Medical microbiology", "Microbial pathogens", "Bacterial pathogens", "staphylococcus", "Staphylococcus aureus", "streptococcus", "pneumococcus", "Haemophilus influenzae", "Infectious diseases", "Bacterial diseases", "Pathology and laboratory medicine", "pathogenesis", "Host-pathogen interactions", "Pulmonology", "Respiratory infections", "Upper respiratory tract infections", "tables", "carriage", "mc", "baseline", "colonization", "sp", "post-inoculation", "52"], "article_id"=>1051956, "categories"=>["Biological Sciences"], "users"=>["Joshua R. Shak", "Amelieke J. H. Cremers", "Jenna F. Gritzfeld", "Marien I. de Jonge", "Peter W. M. Hermans", "Jorge E. Vidal", "Keith P. Klugman", "Stephen B. Gordon"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098829.t002", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Contingency_tables_of_carriage_of_Hi_Sa_and_Mc_at_baseline_against_colonization_with_Sp_post_inoculation_for_52_subjects_/1051956", "title"=>"Contingency tables of carriage of Hi, Sa, and Mc at baseline against colonization with Sp post-inoculation for 52 subjects.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2014-06-10 02:49:20"}
• {"files"=>["https://ndownloader.figshare.com/files/1528394"], "description"=>"<p>Nasopharyngeal samples from 52 subjects were examined at four time points for bacterial DNA and carriage was defined as >100 genomes/ml.</p>", "links"=>[], "tags"=>["ecology", "microbial ecology", "microbiology", "bacteriology", "Gram positive bacteria", "Medical microbiology", "Microbial pathogens", "Bacterial pathogens", "staphylococcus", "Staphylococcus aureus", "streptococcus", "pneumococcus", "Haemophilus influenzae", "Infectious diseases", "Bacterial diseases", "Pathology and laboratory medicine", "pathogenesis", "Host-pathogen interactions", "Pulmonology", "Respiratory infections", "Upper respiratory tract infections", "subjects", "carrying", "mc", "baseline", "14", "days"], "article_id"=>1051953, "categories"=>["Biological Sciences"], "users"=>["Joshua R. Shak", "Amelieke J. H. Cremers", "Jenna F. Gritzfeld", "Marien I. de Jonge", "Peter W. M. Hermans", "Jorge E. Vidal", "Keith P. Klugman", "Stephen B. Gordon"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098829.g002", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Percent_of_subjects_carrying_Sp_Hi_Sa_and_Mc_at_baseline_and_at_2_7_and_14_days_post_inoculation_/1051953", "title"=>"Percent of subjects carrying Sp, Hi, Sa, and Mc at baseline and at 2, 7, and 14 days post-inoculation.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-06-10 02:49:20"}
• {"files"=>["https://ndownloader.figshare.com/files/1528393"], "description"=>"<p>Subjects were administered intra-nasal doses of 60 k, 80 k, 160 k, or 320 k CFU of <i>S. pneumoniae</i> 6B. Comparison of Sp colonization rates and maximum post-inoculation densities rates among subjects in the four dose groups revealed no statistically significant differences. Boxplots indicate median, interquartile range, and range with circles indicating outlier values.</p>", "links"=>[], "tags"=>["ecology", "microbial ecology", "microbiology", "bacteriology", "Gram positive bacteria", "Medical microbiology", "Microbial pathogens", "Bacterial pathogens", "staphylococcus", "Staphylococcus aureus", "streptococcus", "pneumococcus", "Haemophilus influenzae", "Infectious diseases", "Bacterial diseases", "Pathology and laboratory medicine", "pathogenesis", "Host-pathogen interactions", "Pulmonology", "Respiratory infections", "Upper respiratory tract infections", "rates", "post-inoculation", "densities", "inoculation"], "article_id"=>1051952, "categories"=>["Biological Sciences"], "users"=>["Joshua R. Shak", "Amelieke J. H. Cremers", "Jenna F. Gritzfeld", "Marien I. de Jonge", "Peter W. M. Hermans", "Jorge E. Vidal", "Keith P. Klugman", "Stephen B. Gordon"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098829.g001", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Colonization_rates_and_maximum_post_inoculation_densities_at_four_inoculation_doses_/1051952", "title"=>"Colonization rates and maximum post-inoculation densities at four inoculation doses.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-06-10 02:49:20"}
• {"files"=>["https://ndownloader.figshare.com/files/1528396"], "description"=>"<p>Numbers of subjects carrying each bacteria ranged from 11<b>–</b>17 for <i>H. influenzae</i>, 5<b>–</b>10 for <i>M. catarrhalis</i>, and 13<b>–</b>14 for <i>S. aureus</i>. Asterisk indicates <i>p</i> = 0.008.</p>", "links"=>[], "tags"=>["ecology", "microbial ecology", "microbiology", "bacteriology", "Gram positive bacteria", "Medical microbiology", "Microbial pathogens", "Bacterial pathogens", "staphylococcus", "Staphylococcus aureus", "streptococcus", "pneumococcus", "Haemophilus influenzae", "Infectious diseases", "Bacterial diseases", "Pathology and laboratory medicine", "pathogenesis", "Host-pathogen interactions", "Pulmonology", "Respiratory infections", "Upper respiratory tract infections", "carrying", "sa", "mc", "points", "colonization", "baseline", "14", "days", "segregated", "pneumococcal"], "article_id"=>1051955, "categories"=>["Biological Sciences"], "users"=>["Joshua R. Shak", "Amelieke J. H. Cremers", "Jenna F. Gritzfeld", "Marien I. de Jonge", "Peter W. M. Hermans", "Jorge E. Vidal", "Keith P. Klugman", "Stephen B. Gordon"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098829.g004", "stats"=>{"downloads"=>0, "page_views"=>10, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Percent_carrying_Hi_A_Sa_B_and_Mc_C_at_4_time_points_and_density_of_Sa_colonization_at_baseline_and_14_days_D_segregated_by_success_of_pneumococcal_colonization_/1051955", "title"=>"Percent carrying Hi (A), Sa (B), and Mc (C) at 4 time points and density of Sa colonization at baseline and 14 days (D) segregated by success of pneumococcal colonization.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-06-10 02:49:20"}
• {"files"=>["https://ndownloader.figshare.com/files/1528395"], "description"=>"<p>Boxplots of log bacterial density (in genomes/ml) of all samples with >100 genomes/ml at each time point. Boxplots indicate median, interquartile range, and range with circles indicating outlier values. Asterisk indicates <i>p</i> = 0.003.</p>", "links"=>[], "tags"=>["ecology", "microbial ecology", "microbiology", "bacteriology", "Gram positive bacteria", "Medical microbiology", "Microbial pathogens", "Bacterial pathogens", "staphylococcus", "Staphylococcus aureus", "streptococcus", "pneumococcus", "Haemophilus influenzae", "Infectious diseases", "Bacterial diseases", "Pathology and laboratory medicine", "pathogenesis", "Host-pathogen interactions", "Pulmonology", "Respiratory infections", "Upper respiratory tract infections", "sp", "sa", "mc", "nasal", "samples"], "article_id"=>1051954, "categories"=>["Biological Sciences"], "users"=>["Joshua R. Shak", "Amelieke J. H. Cremers", "Jenna F. Gritzfeld", "Marien I. de Jonge", "Peter W. M. Hermans", "Jorge E. Vidal", "Keith P. Klugman", "Stephen B. Gordon"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0098829.g003", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Density_of_Sp_A_Hi_B_Sa_C_and_Mc_D_in_nasal_wash_samples_at_four_time_points_/1051954", "title"=>"Density of Sp (A), Hi (B), Sa (C), and Mc (D) in nasal wash samples at four time points.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2014-06-10 02:49:20"}

PMC Usage Stats | Further Information

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Relative Metric

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F1000Prime