Is Radon Emission in Caves Causing Deletions in Satellite DNA Sequences of Cave-Dwelling Crickets?
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{"title"=>"Is radon emission in caves causing deletions in satellite DNA sequences of cave-dwelling crickets?", "type"=>"journal", "authors"=>[{"first_name"=>"Giuliana", "last_name"=>"Allegrucci", "scopus_author_id"=>"6602118143"}, {"first_name"=>"Valerio", "last_name"=>"Sbordoni", "scopus_author_id"=>"6603696620"}, {"first_name"=>"Donatella", "last_name"=>"Cesaroni", "scopus_author_id"=>"6601956743"}], "year"=>2015, "source"=>"PLoS ONE", "identifiers"=>{"issn"=>"19326203", "pmid"=>"25822625", "pui"=>"603554794", "scopus"=>"2-s2.0-84926434217", "doi"=>"10.1371/journal.pone.0122456", "isbn"=>"1932-6203 (Electronic)\r1932-6203 (Linking)", "sgr"=>"84926434217"}, "id"=>"c8fc5297-09ce-344e-b66e-ac72a15260e4", "abstract"=>"The most stable isotope of radon, 222Rn, represents the major source of natural radioactivity in confined environments such as mines, caves and houses. In this study, we explored the possible radon-related effects on the genome of Dolichopoda cave crickets (Orthoptera, Rhaphidophoridae) sampled in caves with different concentrations of radon. We analyzed specimens from ten populations belonging to two genetically closely related species, D. geniculata and D. laetitiae, and explored the possible association between the radioactivity dose and the level of genetic polymorphism in a specific family of satellite DNA (pDo500 satDNA). Radon concentration in the analyzed caves ranged from 221 to 26000 Bq/m3. Specimens coming from caves with the highest radon concentration showed also the highest variability estimates in both species, and the increased sequence heterogeneity at pDo500 satDNA level can be explained as an effect of the mutation pressure induced by radon in cave. We discovered a specific category of nuclear DNA, the highly repetitive satellite DNA, where the effects of the exposure at high levels of radon-related ionizing radiation are detectable, suggesting that the satDNA sequences might be a valuable tool to disclose harmful effects also in other organisms exposed to high levels of radon concentration.", "link"=>"http://www.mendeley.com/research/radon-emission-caves-causing-deletions-satellite-dna-sequences-cavedwelling-crickets", "reader_count"=>6, "reader_count_by_academic_status"=>{"Unspecified"=>1, "Researcher"=>2, "Student > Ph. D. Student"=>1, "Student > Postgraduate"=>1, "Student > Bachelor"=>1}, "reader_count_by_user_role"=>{"Unspecified"=>1, "Researcher"=>2, "Student > Ph. D. Student"=>1, "Student > Postgraduate"=>1, "Student > Bachelor"=>1}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>3}, "reader_count_by_subdiscipline"=>{"Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>3}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>1}}, "reader_count_by_country"=>{"Mexico"=>1}, "group_count"=>0}

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Figshare

  • {"files"=>["https://ndownloader.figshare.com/files/1995745"], "description"=>"<p>Radon radioactivity measurements (Bq/m<sup>3</sup>) and GenBank Accession numbers are also reported.</p><p><i>Dolichopoda</i> population samples included in this study.</p>", "links"=>[], "tags"=>["Dolichopoda cave crickets", "Satellite DNA Sequences", "pDo 500 satDNA level", "Caves Causing Deletions", "pDo 500 satDNA", "satellite DNA", "radon concentration"], "article_id"=>1361493, "categories"=>["Biological Sciences"], "users"=>["Giuliana Allegrucci", "Valerio Sbordoni", "Donatella Cesaroni"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0122456.t001", "stats"=>{"downloads"=>1, "page_views"=>9, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Dolichopoda_population_samples_included_in_this_study_/1361493", "title"=>"<i>Dolichopoda</i> population samples included in this study.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-03-30 04:17:13"}
  • {"files"=>["https://ndownloader.figshare.com/files/1995744"], "description"=>"<p>Ordination of populations on the plane is described by the first two axes. Population samples coming from caves with high radon concentration are displaced into different portions of the ordination plane.</p>", "links"=>[], "tags"=>["Dolichopoda cave crickets", "Satellite DNA Sequences", "pDo 500 satDNA level", "Caves Causing Deletions", "pDo 500 satDNA", "satellite DNA", "radon concentration"], "article_id"=>1361492, "categories"=>["Biological Sciences"], "users"=>["Giuliana Allegrucci", "Valerio Sbordoni", "Donatella Cesaroni"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0122456.g003", "stats"=>{"downloads"=>3, "page_views"=>15, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Factorial_Correspondence_Analysis_on_polymorphism_measures_of_Dolichopoda_populations_analyzed_in_this_study_/1361492", "title"=>"Factorial Correspondence Analysis on polymorphism measures of <i>Dolichopoda</i> populations analyzed in this study.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-03-30 04:17:13"}
  • {"files"=>["https://ndownloader.figshare.com/files/1995747"], "description"=>"<p>Estimated values, standard errors (<i>SE</i>), <i>t</i>-values and significance (<i>P</i>-values) obtained by Likelihood Ratio Test (LRT) of full vs. reduced models, for the coefficients of fixed effects in Linear Mixed Models (LMMs) for the average length of indel (ALI, see text for details).</p>", "links"=>[], "tags"=>["Dolichopoda cave crickets", "Satellite DNA Sequences", "pDo 500 satDNA level", "Caves Causing Deletions", "pDo 500 satDNA", "satellite DNA", "radon concentration"], "article_id"=>1361495, "categories"=>["Biological Sciences"], "users"=>["Giuliana Allegrucci", "Valerio Sbordoni", "Donatella Cesaroni"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0122456.t003", "stats"=>{"downloads"=>5, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Estimated_values_standard_errors_SE_t_values_and_significance_P_values_obtained_by_Likelihood_Ratio_Test_LRT_of_full_vs_reduced_models_for_the_coefficients_of_fixed_effects_in_Linear_Mixed_Models_LMMs_for_the_average_length_of_indel_ALI_see_text_for_deta/1361495", "title"=>"Estimated values, standard errors (<i>SE</i>), <i>t</i>-values and significance (<i>P</i>-values) obtained by Likelihood Ratio Test (LRT) of full vs. reduced models, for the coefficients of fixed effects in Linear Mixed Models (LMMs) for the average length of indel (ALI, see text for details).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-03-30 04:17:13"}
  • {"files"=>["https://ndownloader.figshare.com/files/1995746"], "description"=>"<p>PSF: Frequency of polymorphic sites; SIF: Frequency of indel sites; ALI: Average length of indel; HIF: Frequency of indel haplotypes; HTF: Haplotype frequency; HID: Indel haplotype diversity; HTD: Total haplotype diversity; K: Average number of nucleotide differences; π: Nucleotide diversity. Standard Deviations are also reported for HTD, K and π.</p><p>Polymorphism estimates in sampled populations of <i>Dolichopoda</i> cave crickets.</p>", "links"=>[], "tags"=>["Dolichopoda cave crickets", "Satellite DNA Sequences", "pDo 500 satDNA level", "Caves Causing Deletions", "pDo 500 satDNA", "satellite DNA", "radon concentration"], "article_id"=>1361494, "categories"=>["Biological Sciences"], "users"=>["Giuliana Allegrucci", "Valerio Sbordoni", "Donatella Cesaroni"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0122456.t002", "stats"=>{"downloads"=>4, "page_views"=>14, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Polymorphism_estimates_in_sampled_populations_of_Dolichopoda_cave_crickets_/1361494", "title"=>"Polymorphism estimates in sampled populations of <i>Dolichopoda</i> cave crickets.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-03-30 04:17:13"}
  • {"files"=>["https://ndownloader.figshare.com/files/1995743"], "description"=>"<p>The analysis was performed for each population of <i>D</i>. <i>laetitiae</i> (A), <i>D</i>. <i>geniculata</i> (B) and on consensus sequences for each species (C). The value of nucleotide diversity (π) was obtained by a sliding window size of 30 with step size 5.</p>", "links"=>[], "tags"=>["Dolichopoda cave crickets", "Satellite DNA Sequences", "pDo 500 satDNA level", "Caves Causing Deletions", "pDo 500 satDNA", "satellite DNA", "radon concentration"], "article_id"=>1361491, "categories"=>["Biological Sciences"], "users"=>["Giuliana Allegrucci", "Valerio Sbordoni", "Donatella Cesaroni"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0122456.g002", "stats"=>{"downloads"=>2, "page_views"=>30, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Sliding_window_analyses_of_the_pDo500_satellite_DNA_in_populations_of_D_laetitiae_and_D_geniculata_included_in_this_study_/1361491", "title"=>"Sliding window analyses of the <i>pDo500</i> satellite DNA in populations of <i>D</i>. <i>laetitiae</i> and <i>D</i>. <i>geniculata</i> included in this study.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-03-30 04:17:13"}
  • {"files"=>["https://ndownloader.figshare.com/files/1995742"], "description"=>"<p>Different colors refer to different species: pink to <i>D</i>. <i>laetitiae</i> and blue to <i>D</i>. <i>geniculata</i>.</p>", "links"=>[], "tags"=>["Dolichopoda cave crickets", "Satellite DNA Sequences", "pDo 500 satDNA level", "Caves Causing Deletions", "pDo 500 satDNA", "satellite DNA", "radon concentration"], "article_id"=>1361490, "categories"=>["Biological Sciences"], "users"=>["Giuliana Allegrucci", "Valerio Sbordoni", "Donatella Cesaroni"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0122456.g001", "stats"=>{"downloads"=>5, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Sampling_sites_of_Dolichopoda_populations_considered_in_this_study_see_also_Table_1_/1361490", "title"=>"Sampling sites of <i>Dolichopoda</i> populations considered in this study (see also Table 1).", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-03-30 04:17:13"}

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Relative Metric

{"start_date"=>"2015-01-01T00:00:00Z", "end_date"=>"2015-12-31T00:00:00Z", "subject_areas"=>[]}
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