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{"title"=>"Adaptive evolution of Eel fluorescent proteins from fatty acid binding proteins produces bright fluorescence in the marine environment", "type"=>"journal", "authors"=>[{"first_name"=>"David F.", "last_name"=>"Gruber", "scopus_author_id"=>"14015606900"}, {"first_name"=>"Jean P.", "last_name"=>"Gaffney", "scopus_author_id"=>"56521132900"}, {"first_name"=>"Shaadi", "last_name"=>"Mehr", "scopus_author_id"=>"56684751700"}, {"first_name"=>"Rob", "last_name"=>"Desalle", "scopus_author_id"=>"10240465000"}, {"first_name"=>"John S.", "last_name"=>"Sparks", "scopus_author_id"=>"7102297599"}, {"first_name"=>"Jelena", "last_name"=>"Platisa", "scopus_author_id"=>"24597877500"}, {"first_name"=>"Vincent A.", "last_name"=>"Pieribone", "scopus_author_id"=>"7003409066"}], "year"=>2015, "source"=>"PLoS ONE", "identifiers"=>{"doi"=>"10.1371/journal.pone.0140972", "issn"=>"19326203", "sgr"=>"84949825634", "pui"=>"607878127", "scopus"=>"2-s2.0-84949825634", "pmid"=>"26561348", "isbn"=>"10.1371/journal.pone.0140972"}, "id"=>"0779791e-fc0c-3ea6-909f-b184329860c8", "abstract"=>"We report the identification and characterization of two new members of a family of bilirubin-inducible fluorescent proteins (FPs) from marine chlopsid eels and demonstrate a key region of the sequence that serves as an evolutionary switch from non-fluorescent to fluorescent fatty acid-binding proteins (FABPs). Using transcriptomic analysis of two species of brightly fluorescent Kaupichthys eels (Kaupichthys hyoproroides and Kaupichthys n. sp.), two new FPs were identified, cloned and characterized (Chlopsid FP I and Chlopsid FP II). We then performed phylogenetic analysis on 210 FABPs, spanning 16 vertebrate orders, and including 163 vertebrate taxa. We show that the fluorescent FPs diverged as a protein family and are the sister group to brain FABPs. Our results indicate that the evolution of this family involved at least three gene duplication events. We show that fluorescent FABPs possess a unique, conserved tripeptide Gly-Pro-Pro sequence motif, which is not found in non-fluorescent fatty acid binding proteins. This motif arose from a duplication event of the FABP brain isoforms and was under strong purifying selection, leading to the classification of this new FP family. Residues adjacent to the motif are under strong positive selection, suggesting a further refinement of the eel protein's fluorescent properties. We present a phylogenetic reconstruction of this emerging FP family and describe additional fluorescent FABP members from groups of distantly related eels. The elucidation of this class of fish FPs with diverse properties provides new templates for the development of protein-based fluorescent tools. The evolutionary adaptation from fatty acid-binding proteins to fluorescent fatty acid-binding proteins raises intrigue as to the functional role of bright green fluorescence in this cryptic genus of reclusive eels that inhabit a blue, nearly monochromatic, marine environment.", "link"=>"http://www.mendeley.com/research/adaptive-evolution-eel-fluorescent-proteins-fatty-acid-binding-proteins-produces-bright-fluorescence", "reader_count"=>24, "reader_count_by_academic_status"=>{"Professor > Associate Professor"=>2, "Librarian"=>1, "Researcher"=>4, "Student > Ph. D. Student"=>4, "Student > Postgraduate"=>1, "Student > Master"=>6, "Student > Bachelor"=>4, "Professor"=>2}, "reader_count_by_user_role"=>{"Professor > Associate Professor"=>2, "Librarian"=>1, "Researcher"=>4, "Student > Ph. D. Student"=>4, "Student > Postgraduate"=>1, "Student > Master"=>6, "Student > Bachelor"=>4, "Professor"=>2}, "reader_count_by_subject_area"=>{"Engineering"=>3, "Biochemistry, Genetics and Molecular Biology"=>1, "Agricultural and Biological Sciences"=>12, "Medicine and Dentistry"=>4, "Neuroscience"=>1, "Arts and Humanities"=>1, "Computer Science"=>2}, "reader_count_by_subdiscipline"=>{"Engineering"=>{"Engineering"=>3}, "Medicine and Dentistry"=>{"Medicine and Dentistry"=>4}, "Neuroscience"=>{"Neuroscience"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>12}, "Computer Science"=>{"Computer Science"=>2}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>1}, "Arts and Humanities"=>{"Arts and Humanities"=>1}}, "group_count"=>0}

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• http://doi.org/10.1038/srep24751
• http://doi.org/10.1038/s41598-019-41959-8
• http://doi.org/10.1016/j.molmed.2016.07.004
• http://doi.org/10.1007/s12041-017-0751-5
• http://doi.org/10.1016/j.isci.2019.07.019
• http://doi.org/10.1002/cpbi.67
• http://doi.org/10.1206/3845.1
• http://doi.org/10.1073/pnas.1701053114
• http://doi.org/10.1093/gbe/evy130
• http://doi.org/10.1093/mnras/stz1842
• http://doi.org/10.1126/scirobotics.aat1893
• http://doi.org/10.1093/mnras/sty2411

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• 4843165

Scopus | Further Information

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• {"id"=>"664781815207432192", "text"=>"New fluorescent proteins found in eel. UnaG gets new friends. @NathanShaner @GiampetruzziA https://t.co/LgRUazs11M https://t.co/9fKKF4YZdc", "created_at"=>"2015-11-12T12:28:30Z", "user"=>"LightUpScience", "user_name"=>"Marc Zimmer", "user_profile_image"=>"http://pbs.twimg.com/profile_images/543410175021834240/GWpFI2Vm_normal.png"}
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• {"id"=>"664895513112805376", "text"=>"New science on #fluorescent #eels! PLoS paper at https://t.co/EZOrvtWinG. Photo (c) Charles Mazel https://t.co/FhC7rztptA", "created_at"=>"2015-11-12T20:00:18Z", "user"=>"NIGHTSEA29", "user_name"=>"NightSea", "user_profile_image"=>"http://pbs.twimg.com/profile_images/519169116775514112/NOUR15dB_normal.jpeg"}
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• {"id"=>"665547084842467329", "text"=>"Fluorescent Eel Discovered https://t.co/M0oQ59FFO0 ping @karlshuker @CryptoLoren @CFZJon", "created_at"=>"2015-11-14T15:09:24Z", "user"=>"anomalistnews", "user_name"=>"The Anomalist", "user_profile_image"=>"http://pbs.twimg.com/profile_images/2367284344/ding_normal.gif"}
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• {"id"=>"666473849811156992", "text"=>"元論文はこれかhttps://t.co/N6htRCxEqf", "created_at"=>"2015-11-17T04:32:02Z", "user"=>"wormanago", "user_name"=>"Hibino Y", "user_profile_image"=>"http://pbs.twimg.com/profile_images/378800000814370370/b76e3439f01585752aa569ef36708355_normal.jpeg"}
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• {"id"=>"667368012715028485", "text"=>"Finally published the fluorescent protein from a glowing eel in PLoS One https://t.co/eKXRUA5GI2 https://t.co/CJ6J87jPtZ", "created_at"=>"2015-11-19T15:45:07Z", "user"=>"vpieribone", "user_name"=>"Vincent Pieribone", "user_profile_image"=>"http://pbs.twimg.com/profile_images/509065790679572480/-Z2MyfeL_normal.jpeg"}
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• {"id"=>"668105378463248384", "text"=>"Adaptive Evolution of Eel Fluorescent Proteins from Fatty Acid Binding Proteins Produces Bright Fluorescence https://t.co/X5D3kfg7y1", "created_at"=>"2015-11-21T16:35:09Z", "user"=>"DesmondRamirez1", "user_name"=>"Desmond Ramirez", "user_profile_image"=>"http://pbs.twimg.com/profile_images/554481313911013377/eUnIV6Wj_normal.jpeg"}
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• {"id"=>"693832836281995265", "text"=>"RT @vpieribone: Finally published the fluorescent protein from a glowing eel in PLoS One https://t.co/eKXRUA5GI2 https://t.co/CJ6J87jPtZ", "created_at"=>"2016-01-31T16:26:53Z", "user"=>"rita_strack", "user_name"=>"Rita Strack", "user_profile_image"=>"http://pbs.twimg.com/profile_images/660103080101421060/2wd21Lgj_normal.jpg"}

Wikipedia | Further Information

• {"title"=>"File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g006.jpg", "url"=>"http://commons.wikimedia.org/wiki/File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g006.jpg", "timestamp"=>"2017-11-19T19:23:03Z"}
• {"title"=>"File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g005.jpg", "url"=>"http://commons.wikimedia.org/wiki/File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g005.jpg", "timestamp"=>"2017-11-19T19:22:58Z"}
• {"title"=>"File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g009.jpg", "url"=>"http://commons.wikimedia.org/wiki/File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g009.jpg", "timestamp"=>"2017-11-19T19:23:18Z"}
• {"title"=>"File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g002.jpg", "url"=>"http://commons.wikimedia.org/wiki/File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g002.jpg", "timestamp"=>"2017-11-19T19:22:43Z"}
• {"title"=>"File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g003.jpg", "url"=>"http://commons.wikimedia.org/wiki/File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g003.jpg", "timestamp"=>"2017-11-19T19:22:48Z"}
• {"title"=>"File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g004.jpg", "url"=>"http://commons.wikimedia.org/wiki/File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g004.jpg", "timestamp"=>"2017-11-19T19:22:53Z"}
• {"title"=>"File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g001.jpg", "url"=>"http://commons.wikimedia.org/wiki/File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g001.jpg", "timestamp"=>"2017-11-19T19:22:38Z"}
• {"title"=>"File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g007.jpg", "url"=>"http://commons.wikimedia.org/wiki/File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g007.jpg", "timestamp"=>"2017-11-19T19:23:08Z"}
• {"title"=>"File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g008.jpg", "url"=>"http://commons.wikimedia.org/wiki/File:Adaptive-Evolution-of-Eel-Fluorescent-Proteins-from-Fatty-Acid-Binding-Proteins-Produces-Bright-pone.0140972.g008.jpg", "timestamp"=>"2017-11-19T19:23:13Z"}

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Figshare

• {"files"=>["https://ndownloader.figshare.com/files/2437410"], "description"=>"<p>Table of properties for fluorescent proteins.</p>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600832, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0140972.t003", "stats"=>{"downloads"=>3, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Table_of_properties_for_fluorescent_proteins_/1600832", "title"=>"Table of properties for fluorescent proteins.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-11-11 04:10:44"}
• {"files"=>["https://ndownloader.figshare.com/files/2437415", "https://ndownloader.figshare.com/files/2437416", "https://ndownloader.figshare.com/files/2437417", "https://ndownloader.figshare.com/files/2437418", "https://ndownloader.figshare.com/files/2437419", "https://ndownloader.figshare.com/files/2437420", "https://ndownloader.figshare.com/files/2437421"], "description"=>"<div><p>We report the identification and characterization of two new members of a family of bilirubin-inducible fluorescent proteins (FPs) from marine chlopsid eels and demonstrate a key region of the sequence that serves as an evolutionary switch from non-fluorescent to fluorescent fatty acid-binding proteins (FABPs). Using transcriptomic analysis of two species of brightly fluorescent <i>Kaupichthys</i> eels (<i>Kaupichthys hyoproroides and Kaupichthys n</i>. <i>sp</i>.<i>)</i>, two new FPs were identified, cloned and characterized (Chlopsid FP I and Chlopsid FP II). We then performed phylogenetic analysis on 210 FABPs, spanning 16 vertebrate orders, and including 163 vertebrate taxa. We show that the fluorescent FPs diverged as a protein family and are the sister group to brain FABPs. Our results indicate that the evolution of this family involved at least three gene duplication events. We show that fluorescent FABPs possess a unique, conserved tripeptide Gly-Pro-Pro sequence motif, which is not found in non-fluorescent fatty acid binding proteins. This motif arose from a duplication event of the FABP brain isoforms and was under strong purifying selection, leading to the classification of this new FP family. Residues adjacent to the motif are under strong positive selection, suggesting a further refinement of the eel protein’s fluorescent properties. We present a phylogenetic reconstruction of this emerging FP family and describe additional fluorescent FABP members from groups of distantly related eels. The elucidation of this class of fish FPs with diverse properties provides new templates for the development of protein-based fluorescent tools. The evolutionary adaptation from fatty acid-binding proteins to fluorescent fatty acid-binding proteins raises intrigue as to the functional role of bright green fluorescence in this cryptic genus of reclusive eels that inhabit a blue, nearly monochromatic, marine environment.</p></div>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600836, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>["https://dx.doi.org/10.1371/journal.pone.0140972.s001", "https://dx.doi.org/10.1371/journal.pone.0140972.s002", "https://dx.doi.org/10.1371/journal.pone.0140972.s003", "https://dx.doi.org/10.1371/journal.pone.0140972.s004", "https://dx.doi.org/10.1371/journal.pone.0140972.s005", "https://dx.doi.org/10.1371/journal.pone.0140972.s006", "https://dx.doi.org/10.1371/journal.pone.0140972.s007"], "stats"=>{"downloads"=>10, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Adaptive_Evolution_of_Eel_Fluorescent_Proteins_from_Fatty_Acid_Binding_Proteins_Produces_Bright_Fluorescence_in_the_Marine_Environment_/1600836", "title"=>"Adaptive Evolution of Eel Fluorescent Proteins from Fatty Acid Binding Proteins Produces Bright Fluorescence in the Marine Environment", "pos_in_sequence"=>0, "defined_type"=>4, "published_date"=>"2015-11-11 04:10:44"}
• {"files"=>["https://ndownloader.figshare.com/files/2437390"], "description"=>"<p>Biofluorescent Chlopsidae (lower right) photographed in Little Cayman Island.</p>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600816, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0140972.g001", "stats"=>{"downloads"=>1, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Biofluorescent_Chlopsidae_lower_right_photographed_in_Little_Cayman_Island_/1600816", "title"=>"Biofluorescent Chlopsidae (lower right) photographed in Little Cayman Island.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-11-11 04:10:44"}
• {"files"=>["https://ndownloader.figshare.com/files/2437396"], "description"=>"<p>A) White light; B) Green fluorescence.</p>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600818, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0140972.g002", "stats"=>{"downloads"=>4, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Kaupichthys_hyoproroides_collected_in_Bahamas_and_used_in_this_study_/1600818", "title"=>"<i>Kaupichthys hyoproroides</i> collected in Bahamas and used in this study.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-11-11 04:10:44"}
• {"files"=>["https://ndownloader.figshare.com/files/2437398"], "description"=>"<p>A) Head fluorescence, B) Cross-section through demonstrating fluorescence in the musculature. C) Close up of skin revealing dark pigmented regions interspersed with fluorescence arising from both the skin and internal musculature.</p>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600820, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0140972.g003", "stats"=>{"downloads"=>2, "page_views"=>0, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Details_of_green_fluorescence_of_Kaupichthys_sp_/1600820", "title"=>"Details of green fluorescence of <i>Kaupichthys sp</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-11-11 04:10:44"}
• {"files"=>["https://ndownloader.figshare.com/files/2437399"], "description"=>"<p>A) Coomassie stained gel; B) Fluorescent bands imaged under illumination with blue light.</p>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600821, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0140972.g004", "stats"=>{"downloads"=>5, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Native_gel_of_tissue_homogenate_from_Kaupichthys_hyoproroides_/1600821", "title"=>"Native gel of tissue homogenate from <i>Kaupichthys hyoproroides</i>.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-11-11 04:10:44"}
• {"files"=>["https://ndownloader.figshare.com/files/2437402"], "description"=>"<p>Residues highlighted in blue show areas of homology. The GPP sequence motif is highlighted in red.</p>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600824, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0140972.g005", "stats"=>{"downloads"=>4, "page_views"=>5, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Sequence_alignment_of_fluorescent_FABPs_from_eels_with_a_non_fluorescent_FABP_from_Kaupichthys_hyoproroides_Chlopsid_NFP_and_human_brain_FABP_7_/1600824", "title"=>"Sequence alignment of fluorescent FABPs from eels with a non-fluorescent FABP from <i>Kaupichthys hyoproroides</i> (Chlopsid NFP) and human brain FABP-7.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-11-11 04:10:44"}
• {"files"=>["https://ndownloader.figshare.com/files/2437403"], "description"=>"<p>Excitation/emission spectra of Chlopsid FP I and UnaG.</p>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600825, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0140972.g006", "stats"=>{"downloads"=>4, "page_views"=>30, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Excitation_emission_spectra_of_Chlopsid_FP_I_and_UnaG_/1600825", "title"=>"Excitation/emission spectra of Chlopsid FP I and UnaG.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-11-11 04:10:44"}
• {"files"=>["https://ndownloader.figshare.com/files/2437404"], "description"=>"<p>See text for details of analysis. The arrows in the tree indicate potential branches where duplications occur to explain the paralog patterns in the gene family. The purple circles indicate the two branches where significant dN/dS skew occurs, and the number inside of the circle refers to the magnitude of the dN/dS skew.</p>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600826, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0140972.g007", "stats"=>{"downloads"=>8, "page_views"=>97, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Phylogenetic_tree_generated_by_Maximum_likelihood_analysis_in_RaxML_Blackbox_/1600826", "title"=>"Phylogenetic tree generated by Maximum likelihood analysis in RaxML Blackbox.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-11-11 04:10:44"}
• {"files"=>["https://ndownloader.figshare.com/files/2437405"], "description"=>"<p>A) Alignment of human brain FABP-7, UnaG and Chlopsid FP I. Red rectangles show residues that are inserted in the eel FP. Green rectangles show residues under dN/dS skew. Grey rectangles indicate polarity index. Blue highlights secondary structure factors. Pink highlights volume. Light green highlights refractivity/heat capacity and purple highlights charge/iso-electric point. When multiple colors appear at a site, this means that more than a single method detected changes or skew at those positions. B) Crystal structure of UnaG (pdb 4I3B) showing areas that are inserted in the eel FP as well as green showing residues under dN/dS skew.</p>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600827, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0140972.g008", "stats"=>{"downloads"=>7, "page_views"=>13, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Diagram_showing_the_alignment_of_FABP_8217_s_and_structure_of_UnaG_/1600827", "title"=>"Diagram showing the alignment of FABP’s and structure of UnaG.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-11-11 04:10:44"}
• {"files"=>["https://ndownloader.figshare.com/files/2437407"], "description"=>"<p>UnaG distribution in HEK293 cells (top panel), two photon localization of Chlopsid FP I in HEK293 cells (bottom panel) and confocal images of CiVSP-UnaG fusions in HEK293 cells.</p>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600829, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0140972.g009", "stats"=>{"downloads"=>2, "page_views"=>11, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Two_photon_image_of_eel_fluorescence_/1600829", "title"=>"Two photon image of eel fluorescence.", "pos_in_sequence"=>0, "defined_type"=>1, "published_date"=>"2015-11-11 04:10:44"}
• {"files"=>["https://ndownloader.figshare.com/files/2437408"], "description"=>"<p>Summary statistics for individual assemblies of <i>Kaupichthys hyoproroides</i> and <i>Kaupichthys</i> n. sp. (Chlopsid I and Chlopsid II, respectively).</p>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600830, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0140972.t001", "stats"=>{"downloads"=>1, "page_views"=>8, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Summary_statistics_for_individual_assemblies_of_Kaupichthys_hyoproroides_and_Kaupichthys_n_sp_Chlopsid_I_and_Chlopsid_II_respectively_/1600830", "title"=>"Summary statistics for individual assemblies of <i>Kaupichthys hyoproroides</i> and <i>Kaupichthys</i> n. sp. (Chlopsid I and Chlopsid II, respectively).", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-11-11 04:10:44"}
• {"files"=>["https://ndownloader.figshare.com/files/2437409"], "description"=>"<p>Summary statistics of read counts and coverage of <i>Kaupichthys hyoproroides</i>.</p>", "links"=>[], "tags"=>["FABP brain isoforms", "acid binding proteins", "marine chlopsid eels", "Kaupichthy", "gene duplication events", "Chlopsid FP II", "FP family", "motif", "Binding Proteins Produces Bright Fluorescence"], "article_id"=>1600831, "categories"=>["Biological Sciences"], "users"=>["David F. Gruber", "Jean P. Gaffney", "Shaadi Mehr", "Rob DeSalle", "John S. Sparks", "Jelena Platisa", "Vincent A. Pieribone"], "doi"=>"https://dx.doi.org/10.1371/journal.pone.0140972.t002", "stats"=>{"downloads"=>2, "page_views"=>7, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/_Summary_statistics_of_read_counts_and_coverage_of_Kaupichthys_hyoproroides_/1600831", "title"=>"Summary statistics of read counts and coverage of <i>Kaupichthys hyoproroides</i>.", "pos_in_sequence"=>0, "defined_type"=>3, "published_date"=>"2015-11-11 04:10:44"}

PMC Usage Stats | Further Information

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• {"unique-ip"=>"10", "full-text"=>"9", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"15", "supp-data"=>"2", "cited-by"=>"0", "year"=>"2016", "month"=>"6"}
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• {"unique-ip"=>"5", "full-text"=>"8", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"8"}
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• {"unique-ip"=>"6", "full-text"=>"6", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2016", "month"=>"12"}
• {"unique-ip"=>"17", "full-text"=>"11", "pdf"=>"6", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"1", "cited-by"=>"1", "year"=>"2017", "month"=>"1"}
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• {"unique-ip"=>"6", "full-text"=>"6", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"4", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"5"}
• {"unique-ip"=>"7", "full-text"=>"8", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"6"}
• {"unique-ip"=>"8", "full-text"=>"8", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"7"}
• {"unique-ip"=>"7", "full-text"=>"5", "pdf"=>"0", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"1", "cited-by"=>"0", "year"=>"2017", "month"=>"8"}
• {"unique-ip"=>"22", "full-text"=>"13", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"5", "cited-by"=>"0", "year"=>"2017", "month"=>"9"}
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• {"unique-ip"=>"13", "full-text"=>"10", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"9", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"12"}
• {"unique-ip"=>"16", "full-text"=>"23", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"17", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"1"}
• {"unique-ip"=>"11", "full-text"=>"9", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"3"}
• {"unique-ip"=>"15", "full-text"=>"14", "pdf"=>"15", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"1"}
• {"unique-ip"=>"9", "full-text"=>"7", "pdf"=>"14", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"6", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"12"}
• {"unique-ip"=>"18", "full-text"=>"7", "pdf"=>"10", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"10", "supp-data"=>"5", "cited-by"=>"0", "year"=>"2018", "month"=>"11"}
• {"unique-ip"=>"4", "full-text"=>"5", "pdf"=>"6", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"9"}
• {"unique-ip"=>"13", "full-text"=>"17", "pdf"=>"5", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"4"}
• {"unique-ip"=>"6", "full-text"=>"12", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"5"}
• {"unique-ip"=>"5", "full-text"=>"1", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"6", "cited-by"=>"0", "year"=>"2018", "month"=>"6"}
• {"unique-ip"=>"9", "full-text"=>"6", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"10", "cited-by"=>"0", "year"=>"2018", "month"=>"7"}
• {"unique-ip"=>"10", "full-text"=>"12", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"8"}
• {"unique-ip"=>"15", "full-text"=>"14", "pdf"=>"28", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"10"}
• {"unique-ip"=>"12", "full-text"=>"9", "pdf"=>"11", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"2"}
• {"unique-ip"=>"8", "full-text"=>"7", "pdf"=>"8", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"9", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"3"}
• {"unique-ip"=>"8", "full-text"=>"5", "pdf"=>"8", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"14", "cited-by"=>"0", "year"=>"2019", "month"=>"4"}
• {"unique-ip"=>"15", "full-text"=>"8", "pdf"=>"9", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"6", "supp-data"=>"7", "cited-by"=>"0", "year"=>"2019", "month"=>"5"}
• {"unique-ip"=>"75", "full-text"=>"137", "pdf"=>"14", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"18", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"8"}
• {"unique-ip"=>"55", "full-text"=>"54", "pdf"=>"13", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"32", "supp-data"=>"7", "cited-by"=>"2", "year"=>"2019", "month"=>"9"}
• {"unique-ip"=>"18", "full-text"=>"16", "pdf"=>"10", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"11", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"10"}

Relative Metric

{"start_date"=>"2015-01-01T00:00:00Z", "end_date"=>"2015-12-31T00:00:00Z", "subject_areas"=>[]}

F1000Prime