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{"title"=>"Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential", "type"=>"journal", "authors"=>[{"first_name"=>"Justin", "last_name"=>"Bahl", "scopus_author_id"=>"35308668200"}, {"first_name"=>"Truc T.", "last_name"=>"Pham", "scopus_author_id"=>"57189311383"}, {"first_name"=>"Nichola J.", "last_name"=>"Hill", "scopus_author_id"=>"35764246000"}, {"first_name"=>"Islam T.M.", "last_name"=>"Hussein", "scopus_author_id"=>"23488781700"}, {"first_name"=>"Eric J.", "last_name"=>"Ma", "scopus_author_id"=>"56470306900"}, {"first_name"=>"Bernard C.", "last_name"=>"Easterday", "scopus_author_id"=>"57196977666"}, {"first_name"=>"Rebecca A.", "last_name"=>"Halpin", "scopus_author_id"=>"15822104200"}, {"first_name"=>"Timothy B.", "last_name"=>"Stockwell", "scopus_author_id"=>"16242581000"}, {"first_name"=>"David E.", "last_name"=>"Wentworth", "scopus_author_id"=>"7004800841"}, {"first_name"=>"Ghazi", "last_name"=>"Kayali", "scopus_author_id"=>"24366561300"}, {"first_name"=>"Scott", "last_name"=>"Krauss", "scopus_author_id"=>"7102769210"}, {"first_name"=>"Stacey", "last_name"=>"Schultz-Cherry", "scopus_author_id"=>"35552823600"}, {"first_name"=>"Robert G.", "last_name"=>"Webster", "scopus_author_id"=>"36048363100"}, {"first_name"=>"Richard J.", "last_name"=>"Webby", "scopus_author_id"=>"35448064800"}, {"first_name"=>"Michael D.", "last_name"=>"Swartz", "scopus_author_id"=>"8581333000"}, {"first_name"=>"Gavin J.D.", "last_name"=>"Smith", "scopus_author_id"=>"8344015800"}, {"first_name"=>"Jonathan A.", "last_name"=>"Runstadler", "scopus_author_id"=>"6602760877"}], "year"=>2016, "source"=>"PLoS Pathogens", "identifiers"=>{"pmid"=>"27166585", "sgr"=>"84964323167", "doi"=>"10.1371/journal.ppat.1005620", "scopus"=>"2-s2.0-84964323167", "pui"=>"610667812", "isbn"=>"1553-7374 (Electronic)\\r1553-7366 (Linking)", "issn"=>"15537374"}, "id"=>"c4b70955-f4c5-3a63-b71a-fba15e314152", "abstract"=>"Despite evidence for avian influenza A virus (AIV) transmission between wild and domestic ecosystems, the roles of bird migration and poultry trade in the spread of viruses remain enigmatic. In this study, we integrate ecosystem interactions into a phylogeographic model to assess the contribution of wild and domestic hosts to AIV distribution and persistence. Analysis of globally sampled AIV datasets shows frequent two-way transmission between wild and domestic ecosystems. In general, viral flow from domestic to wild bird populations was restricted to within a geographic region. In contrast, spillover from wild to domestic populations occurred both within and between regions. Wild birds mediated long-distance dispersal at intercontinental scales whereas viral spread among poultry populations was a major driver of regional spread. Viral spread between poultry flocks frequently originated from persistent lineages circulating in regions of intensive poultry production. Our analysis of long-term surveillance data demonstrates that meaningful insights can be inferred from integrating ecosystem into phylogeographic reconstructions that may be consequential for pandemic preparedness and livestock protection.", "link"=>"http://www.mendeley.com/research/ecosystem-interactions-underlie-spread-avian-influenza-viruses-pandemic-potential", "reader_count"=>33, "reader_count_by_academic_status"=>{"Unspecified"=>2, "Professor > Associate Professor"=>3, "Researcher"=>4, "Student > Ph. D. Student"=>11, "Student > Postgraduate"=>3, "Student > Master"=>4, "Other"=>2, "Student > Bachelor"=>4}, "reader_count_by_user_role"=>{"Unspecified"=>2, "Professor > Associate Professor"=>3, "Researcher"=>4, "Student > Ph. D. Student"=>11, "Student > Postgraduate"=>3, "Student > Master"=>4, "Other"=>2, "Student > Bachelor"=>4}, "reader_count_by_subject_area"=>{"Unspecified"=>1, "Environmental Science"=>1, "Biochemistry, Genetics and Molecular Biology"=>3, "Agricultural and Biological Sciences"=>17, "Medicine and Dentistry"=>4, "Veterinary Science and Veterinary Medicine"=>6, "Immunology and Microbiology"=>1}, "reader_count_by_subdiscipline"=>{"Medicine and Dentistry"=>{"Medicine and Dentistry"=>4}, "Immunology and Microbiology"=>{"Immunology and Microbiology"=>1}, "Agricultural and Biological Sciences"=>{"Agricultural and Biological Sciences"=>17}, "Biochemistry, Genetics and Molecular Biology"=>{"Biochemistry, Genetics and Molecular Biology"=>3}, "Unspecified"=>{"Unspecified"=>1}, "Environmental Science"=>{"Environmental Science"=>1}, "Veterinary Science and Veterinary Medicine"=>{"Veterinary Science and Veterinary Medicine"=>6}}, "reader_count_by_country"=>{"United States"=>1, "Italy"=>1}, "group_count"=>3}

ORCID

CrossRef

• http://doi.org/10.1038/s41426-018-0185-z
• http://doi.org/10.3201/eid2410.171891
• http://doi.org/10.1093/femsre/fuz019
• http://doi.org/10.1080/22221751.2019.1663712
• http://doi.org/10.1098/rstb.2018.0257
• http://doi.org/10.1080/03079457.2018.1470606
• http://doi.org/10.1186/s12862-019-1431-2
• http://doi.org/10.1371/journal.pcbi.1007189
• http://doi.org/10.1111/tbed.12986
• http://doi.org/10.1016/j.meegid.2016.04.011
• http://doi.org/10.1002/jcb.29017
• http://doi.org/10.1186/s12862-017-0965-4
• http://doi.org/10.1016/j.envint.2018.06.018
• http://doi.org/10.3201/eid2412.171860
• http://doi.org/10.1128/genomeA.00869-16
• http://doi.org/10.1007/s10393-017-1257-6

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Article Coverage Curated

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• {"url"=>"http%3A%2F%2Fjournals.plos.org%2Fplospathogens%2Farticle%3Fid%3D10.1371%252Fjournal.ppat.1005620", "share_count"=>4, "like_count"=>16, "comment_count"=>0, "click_count"=>0, "total_count"=>20}

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• {"id"=>"730471166591127552", "text"=>"New Paper w @_islamhussein in #PLOSPathogens: Ecosystem Interactions Underlie Spread of Avian Influenza A Virus... https://t.co/NV0iwMFPzf", "created_at"=>"2016-05-11T18:54:32Z", "user"=>"JustinBahl", "user_name"=>"Justin Bahl", "user_profile_image"=>"http://pbs.twimg.com/profile_images/508384011232636929/bzWgmBN1_normal.jpeg"}
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• {"id"=>"730498731766915073", "text"=>"Congrats to our collaborators on a great paper! https://t.co/oLlZWghKlM", "created_at"=>"2016-05-11T20:44:04Z", "user"=>"ericmjl", "user_name"=>"Eric Ma", "user_profile_image"=>"http://pbs.twimg.com/profile_images/730095651187531778/DlVSxhSn_normal.jpg"}
• {"id"=>"730506773761642496", "text"=>"New research: Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential https://t.co/NrWsiXLbiL", "created_at"=>"2016-05-11T21:16:01Z", "user"=>"PLOSPathogens", "user_name"=>"PLOS Pathogens", "user_profile_image"=>"http://pbs.twimg.com/profile_images/459394339945197568/BuJQyL0D_normal.jpeg"}
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• {"id"=>"730816334712332288", "text"=>"Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential https://t.co/6qSDrEUIzW @PLOSONE @PLOS", "created_at"=>"2016-05-12T17:46:06Z", "user"=>"BehavEcolPapers", "user_name"=>"BehavEcolPapers", "user_profile_image"=>"http://pbs.twimg.com/profile_images/517345050670268416/beckzx8T_normal.jpeg"}
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• {"id"=>"730903515246170112", "text"=>"RT @ericmjl: Congrats to our collaborators on a great paper! https://t.co/oLlZWghKlM", "created_at"=>"2016-05-12T23:32:32Z", "user"=>"JustinBahl", "user_name"=>"Justin Bahl", "user_profile_image"=>"http://pbs.twimg.com/profile_images/508384011232636929/bzWgmBN1_normal.jpeg"}
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• {"id"=>"731213299157585920", "text"=>"#PLOSPathogens: Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potenti ... https://t.co/zpf940cjMU", "created_at"=>"2016-05-13T20:03:30Z", "user"=>"EileenChoffnes", "user_name"=>"Eileen Choffnes", "user_profile_image"=>"http://pbs.twimg.com/profile_images/578647139858935809/fwyS_PtU_normal.jpeg"}
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• {"id"=>"732781442636226560", "text"=>"#PLOSPathogens: Ecosystem Interactions Underlie the Spread of #Avian #Influenza A Viruses with Pandemic Potential https://t.co/8aqFjO2O95", "created_at"=>"2016-05-18T03:54:45Z", "user"=>"SusanAShriner", "user_name"=>"Susan Shriner", "user_profile_image"=>"http://pbs.twimg.com/profile_images/626607914069798912/sK41xnJY_normal.jpg"}
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• {"id"=>"803399207235256320", "text"=>"@BulletproofLS What paper are you talking about. The link goes 2U Min login. We suggested same here https://t.co/NV0iwMoeHH", "created_at"=>"2016-11-29T00:44:32Z", "user"=>"JustinBahl", "user_name"=>"Justin Bahl", "user_profile_image"=>"http://pbs.twimg.com/profile_images/508384011232636929/bzWgmBN1_normal.jpeg"}

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Figshare

• {"files"=>["https://ndownloader.figshare.com/files/5214001"], "description"=>"<p>Mean waiting times for the H9 population in each state calculated as a proportion of the total branch times across the phylogenetic tree sampled per MCMC^{<a href=\"http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1005620#t001fn001\" target=\"_blank\">*</a>}.</p>", "links"=>[], "tags"=>["phylogeographic model", "pandemic preparedness", "surveillance data", "bird migration", "analysis", "Viral spread", "poultry populations", "poultry trade", "bird populations", "Wild birds", "livestock protection", "poultry flocks", "Avian Influenza", "poultry production", "virus", "phylogeographic reconstructions", "ecosystem interactions", "Ecosystem Interactions Underlie", "AIV distribution", "AIV datasets", "region"], "article_id"=>3370786, "categories"=>["Microbiology", "Molecular Biology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases"], "users"=>["Justin Bahl", "Truc T. Pham", "Nichola J. Hill", "Islam T. M. Hussein", "Eric J. Ma", "Bernard C. Easterday", "Rebecca A. Halpin", "Timothy B. Stockwell", "David E. Wentworth", "Ghazi Kayali", "Scott Krauss", "Stacey Schultz-Cherry", "Robert G. Webster", "Richard J. Webby", "Michael D. Swartz", "Gavin J. D. Smith", "Jonathan A. Runstadler"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1005620.t001", "stats"=>{"downloads"=>1, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Mean_waiting_times_for_the_H9_population_in_each_state_calculated_as_a_proportion_of_the_total_branch_times_across_the_phylogenetic_tree_sampled_per_MCMC_sup_sup_/3370786", "title"=>"Mean waiting times for the H9 population in each state calculated as a proportion of the total branch times across the phylogenetic tree sampled per MCMC^*.", "pos_in_sequence"=>5, "defined_type"=>3, "published_date"=>"2016-05-11 03:30:01"}
• {"files"=>["https://ndownloader.figshare.com/files/5213986"], "description"=>"<p>(<b>A)</b> Map showing global chicken density (millions of chickens/km²) <b>(B)</b> Reported trade intensity of domestic poultry 1995 to 2011 between regions <b>(C)</b> Locations of available viral sequences within discrete regions defined by sampling effort, poultry production and sequence data.</p>", "links"=>[], "tags"=>["phylogeographic model", "pandemic preparedness", "surveillance data", "bird migration", "analysis", "Viral spread", "poultry populations", "poultry trade", "bird populations", "Wild birds", "livestock protection", "poultry flocks", "Avian Influenza", "poultry production", "virus", "phylogeographic reconstructions", "ecosystem interactions", "Ecosystem Interactions Underlie", "AIV distribution", "AIV datasets", "region"], "article_id"=>3370771, "categories"=>["Microbiology", "Molecular Biology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases"], "users"=>["Justin Bahl", "Truc T. Pham", "Nichola J. Hill", "Islam T. M. Hussein", "Eric J. Ma", "Bernard C. Easterday", "Rebecca A. Halpin", "Timothy B. Stockwell", "David E. Wentworth", "Ghazi Kayali", "Scott Krauss", "Stacey Schultz-Cherry", "Robert G. Webster", "Richard J. Webby", "Michael D. Swartz", "Gavin J. D. Smith", "Jonathan A. Runstadler"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1005620.g001", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Poultry_production_global_trade_intensity_and_location_of_viral_sampling_/3370771", "title"=>"Poultry production, global trade intensity and location of viral sampling.", "pos_in_sequence"=>2, "defined_type"=>1, "published_date"=>"2016-05-11 03:30:01"}
• {"files"=>["https://ndownloader.figshare.com/files/5213923", "https://ndownloader.figshare.com/files/5213977", "https://ndownloader.figshare.com/files/5213974", "https://ndownloader.figshare.com/files/5213968", "https://ndownloader.figshare.com/files/5213965", "https://ndownloader.figshare.com/files/5213962", "https://ndownloader.figshare.com/files/5213959", "https://ndownloader.figshare.com/files/5213956", "https://ndownloader.figshare.com/files/5213953", "https://ndownloader.figshare.com/files/5213950", "https://ndownloader.figshare.com/files/5213944", "https://ndownloader.figshare.com/files/5213941", "https://ndownloader.figshare.com/files/5213938", "https://ndownloader.figshare.com/files/5213935", "https://ndownloader.figshare.com/files/5213932", "https://ndownloader.figshare.com/files/5213929", "https://ndownloader.figshare.com/files/5213926", "https://ndownloader.figshare.com/files/5213980"], "description"=>"<div><p>Despite evidence for avian influenza A virus (AIV) transmission between wild and domestic ecosystems, the roles of bird migration and poultry trade in the spread of viruses remain enigmatic. In this study, we integrate ecosystem interactions into a phylogeographic model to assess the contribution of wild and domestic hosts to AIV distribution and persistence. Analysis of globally sampled AIV datasets shows frequent two-way transmission between wild and domestic ecosystems. In general, viral flow from domestic to wild bird populations was restricted to within a geographic region. In contrast, spillover from wild to domestic populations occurred both within and between regions. Wild birds mediated long-distance dispersal at intercontinental scales whereas viral spread among poultry populations was a major driver of regional spread. Viral spread between poultry flocks frequently originated from persistent lineages circulating in regions of intensive poultry production. Our analysis of long-term surveillance data demonstrates that meaningful insights can be inferred from integrating ecosystem into phylogeographic reconstructions that may be consequential for pandemic preparedness and livestock protection.</p></div>", "links"=>[], "tags"=>["phylogeographic model", "pandemic preparedness", "surveillance data", "bird migration", "analysis", "Viral spread", "poultry populations", "poultry trade", "bird populations", "Wild birds", "livestock protection", "poultry flocks", "Avian Influenza", "poultry production", "virus", "phylogeographic reconstructions", "ecosystem interactions", "Ecosystem Interactions Underlie", "AIV distribution", "AIV datasets", "region"], "article_id"=>3370756, "categories"=>["Microbiology", "Molecular Biology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases"], "users"=>["Justin Bahl", "Truc T. Pham", "Nichola J. Hill", "Islam T. M. Hussein", "Eric J. Ma", "Bernard C. Easterday", "Rebecca A. Halpin", "Timothy B. Stockwell", "David E. Wentworth", "Ghazi Kayali", "Scott Krauss", "Stacey Schultz-Cherry", "Robert G. Webster", "Richard J. Webby", "Michael D. Swartz", "Gavin J. D. Smith", "Jonathan A. Runstadler"], "doi"=>["https://dx.doi.org/10.1371/journal.ppat.1005620.s001", "https://dx.doi.org/10.1371/journal.ppat.1005620.s017", "https://dx.doi.org/10.1371/journal.ppat.1005620.s016", "https://dx.doi.org/10.1371/journal.ppat.1005620.s015", "https://dx.doi.org/10.1371/journal.ppat.1005620.s014", "https://dx.doi.org/10.1371/journal.ppat.1005620.s013", "https://dx.doi.org/10.1371/journal.ppat.1005620.s012", "https://dx.doi.org/10.1371/journal.ppat.1005620.s011", "https://dx.doi.org/10.1371/journal.ppat.1005620.s010", "https://dx.doi.org/10.1371/journal.ppat.1005620.s009", "https://dx.doi.org/10.1371/journal.ppat.1005620.s008", "https://dx.doi.org/10.1371/journal.ppat.1005620.s007", "https://dx.doi.org/10.1371/journal.ppat.1005620.s006", "https://dx.doi.org/10.1371/journal.ppat.1005620.s005", "https://dx.doi.org/10.1371/journal.ppat.1005620.s004", "https://dx.doi.org/10.1371/journal.ppat.1005620.s003", "https://dx.doi.org/10.1371/journal.ppat.1005620.s002", "https://dx.doi.org/10.1371/journal.ppat.1005620.s018"], "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Ecosystem_Interactions_Underlie_the_Spread_of_Avian_Influenza_A_Viruses_with_Pandemic_Potential/3370756", "title"=>"Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential", "pos_in_sequence"=>1, "defined_type"=>4, "published_date"=>"2016-05-11 03:30:01"}
• {"files"=>["https://ndownloader.figshare.com/files/5214004"], "description"=>"<p>Mean relative risk (RR) ratios for each region to act as a global source or sink population estimated from the total number of Markov jumps from or to each discrete state.</p>", "links"=>[], "tags"=>["phylogeographic model", "pandemic preparedness", "surveillance data", "bird migration", "analysis", "Viral spread", "poultry populations", "poultry trade", "bird populations", "Wild birds", "livestock protection", "poultry flocks", "Avian Influenza", "poultry production", "virus", "phylogeographic reconstructions", "ecosystem interactions", "Ecosystem Interactions Underlie", "AIV distribution", "AIV datasets", "region"], "article_id"=>3370789, "categories"=>["Microbiology", "Molecular Biology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases"], "users"=>["Justin Bahl", "Truc T. Pham", "Nichola J. Hill", "Islam T. M. Hussein", "Eric J. Ma", "Bernard C. Easterday", "Rebecca A. Halpin", "Timothy B. Stockwell", "David E. Wentworth", "Ghazi Kayali", "Scott Krauss", "Stacey Schultz-Cherry", "Robert G. Webster", "Richard J. Webby", "Michael D. Swartz", "Gavin J. D. Smith", "Jonathan A. Runstadler"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1005620.t002", "stats"=>{"downloads"=>0, "page_views"=>3, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Mean_relative_risk_RR_ratios_for_each_region_to_act_as_a_global_source_or_sink_population_estimated_from_the_total_number_of_Markov_jumps_from_or_to_each_discrete_state_/3370789", "title"=>"Mean relative risk (RR) ratios for each region to act as a global source or sink population estimated from the total number of Markov jumps from or to each discrete state.", "pos_in_sequence"=>6, "defined_type"=>3, "published_date"=>"2016-05-11 03:30:01"}
• {"files"=>["https://ndownloader.figshare.com/files/5214007"], "description"=>"<p>Statistically supported interactions are shown in bold. Italicized text indicates interactions between ecosystems.</p>", "links"=>[], "tags"=>["phylogeographic model", "pandemic preparedness", "surveillance data", "bird migration", "analysis", "Viral spread", "poultry populations", "poultry trade", "bird populations", "Wild birds", "livestock protection", "poultry flocks", "Avian Influenza", "poultry production", "virus", "phylogeographic reconstructions", "ecosystem interactions", "Ecosystem Interactions Underlie", "AIV distribution", "AIV datasets", "region"], "article_id"=>3370792, "categories"=>["Microbiology", "Molecular Biology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases"], "users"=>["Justin Bahl", "Truc T. Pham", "Nichola J. Hill", "Islam T. M. Hussein", "Eric J. Ma", "Bernard C. Easterday", "Rebecca A. Halpin", "Timothy B. Stockwell", "David E. Wentworth", "Ghazi Kayali", "Scott Krauss", "Stacey Schultz-Cherry", "Robert G. Webster", "Richard J. Webby", "Michael D. Swartz", "Gavin J. D. Smith", "Jonathan A. Runstadler"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1005620.t003", "stats"=>{"downloads"=>0, "page_views"=>6, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Mean_migration_rates_between_avian_ecosystems_across_sampling_locations_/3370792", "title"=>"Mean migration rates between avian ecosystems across sampling locations.", "pos_in_sequence"=>7, "defined_type"=>3, "published_date"=>"2016-05-11 03:30:01"}
• {"files"=>["https://ndownloader.figshare.com/files/5213992"], "description"=>"<p>(<b>A)</b> H9-HA phylogenetic tree for global isolates where branches are coloured according to discrete geographic region and thick and thin lines indicate ancestral transitions between natural and agricultural ecosystems respectively (<b>B)</b> Graph showing the proportional Markov jump counts between ecosystems over time (<b>C)</b> Heat maps showing mean H9 migrations estimated to and from East China per year. Heat maps for other regions are shown in <a href=\"http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1005620#ppat.1005620.s010\" target=\"_blank\">S4 Fig</a>.</p>", "links"=>[], "tags"=>["phylogeographic model", "pandemic preparedness", "surveillance data", "bird migration", "analysis", "Viral spread", "poultry populations", "poultry trade", "bird populations", "Wild birds", "livestock protection", "poultry flocks", "Avian Influenza", "poultry production", "virus", "phylogeographic reconstructions", "ecosystem interactions", "Ecosystem Interactions Underlie", "AIV distribution", "AIV datasets", "region"], "article_id"=>3370777, "categories"=>["Microbiology", "Molecular Biology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases"], "users"=>["Justin Bahl", "Truc T. Pham", "Nichola J. Hill", "Islam T. M. Hussein", "Eric J. Ma", "Bernard C. Easterday", "Rebecca A. Halpin", "Timothy B. Stockwell", "David E. Wentworth", "Ghazi Kayali", "Scott Krauss", "Stacey Schultz-Cherry", "Robert G. Webster", "Richard J. Webby", "Michael D. Swartz", "Gavin J. D. Smith", "Jonathan A. Runstadler"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1005620.g002", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Phylogenetic_estimation_of_ecological_interactions_and_geographic_spread_/3370777", "title"=>"Phylogenetic estimation of ecological interactions and geographic spread.", "pos_in_sequence"=>3, "defined_type"=>1, "published_date"=>"2016-05-11 03:30:01"}
• {"files"=>["https://ndownloader.figshare.com/files/5213995"], "description"=>"<p><b>(A)</b> Map showing statistically supported transitions between geographic regions by ecosystem. Line thickness corresponds to viral flow rates shown in <a href=\"http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1005620#ppat.1005620.t002\" target=\"_blank\">Table 2</a> (thinnest<0.5; ≥0.5<1; ≥1<2;≥ 2 thickest). (<b>B)</b> Density distribution of statistically supported mean transition rates between ecosystems. *Domestic-to-domestic rates are significantly faster than domestic-to-wild (BF>100), wild-to-domestic (BF = 62.3), and wild-to-wild (BF = 39.4). (<b>C)</b> Statistically supported mean migration rates per MCMC step of wild-to-wild avian transitions versus domestic-to-domestic avian transitions.</p>", "links"=>[], "tags"=>["phylogeographic model", "pandemic preparedness", "surveillance data", "bird migration", "analysis", "Viral spread", "poultry populations", "poultry trade", "bird populations", "Wild birds", "livestock protection", "poultry flocks", "Avian Influenza", "poultry production", "virus", "phylogeographic reconstructions", "ecosystem interactions", "Ecosystem Interactions Underlie", "AIV distribution", "AIV datasets", "region"], "article_id"=>3370783, "categories"=>["Microbiology", "Molecular Biology", "Evolutionary Biology", "Environmental Sciences not elsewhere classified", "Ecology", "Biological Sciences not elsewhere classified", "Infectious Diseases"], "users"=>["Justin Bahl", "Truc T. Pham", "Nichola J. Hill", "Islam T. M. Hussein", "Eric J. Ma", "Bernard C. Easterday", "Rebecca A. Halpin", "Timothy B. Stockwell", "David E. Wentworth", "Ghazi Kayali", "Scott Krauss", "Stacey Schultz-Cherry", "Robert G. Webster", "Richard J. Webby", "Michael D. Swartz", "Gavin J. D. Smith", "Jonathan A. Runstadler"], "doi"=>"https://dx.doi.org/10.1371/journal.ppat.1005620.g003", "stats"=>{"downloads"=>0, "page_views"=>4, "likes"=>0}, "figshare_url"=>"https://figshare.com/articles/Inferred_migration_rates_and_patterns_/3370783", "title"=>"Inferred migration rates and patterns.", "pos_in_sequence"=>4, "defined_type"=>1, "published_date"=>"2016-05-11 03:30:01"}

PMC Usage Stats

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• {"unique-ip"=>"1", "full-text"=>"2", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"8"}
• {"unique-ip"=>"6", "full-text"=>"6", "pdf"=>"5", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"9"}
• {"unique-ip"=>"5", "full-text"=>"4", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"10"}
• {"unique-ip"=>"9", "full-text"=>"7", "pdf"=>"3", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"5", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"11"}
• {"unique-ip"=>"3", "full-text"=>"2", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2017", "month"=>"12"}
• {"unique-ip"=>"1", "full-text"=>"1", "pdf"=>"1", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"1"}
• {"unique-ip"=>"6", "full-text"=>"5", "pdf"=>"2", "abstract"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"18", "cited-by"=>"0", "year"=>"2018", "month"=>"3"}
• {"unique-ip"=>"11", "full-text"=>"13", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"1"}
• {"unique-ip"=>"9", "full-text"=>"10", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"3", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"4"}
• {"unique-ip"=>"9", "full-text"=>"8", "pdf"=>"6", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"5"}
• {"unique-ip"=>"10", "full-text"=>"3", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"8", "cited-by"=>"0", "year"=>"2018", "month"=>"7"}
• {"unique-ip"=>"7", "full-text"=>"6", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"6"}
• {"unique-ip"=>"8", "full-text"=>"8", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"8"}
• {"unique-ip"=>"8", "full-text"=>"9", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"9"}
• {"unique-ip"=>"8", "full-text"=>"7", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"1", "supp-data"=>"17", "cited-by"=>"0", "year"=>"2018", "month"=>"11"}
• {"unique-ip"=>"11", "full-text"=>"13", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"2", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2018", "month"=>"10"}
• {"unique-ip"=>"15", "full-text"=>"16", "pdf"=>"1", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"1", "year"=>"2018", "month"=>"12"}
• {"unique-ip"=>"10", "full-text"=>"12", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"2"}
• {"unique-ip"=>"6", "full-text"=>"6", "pdf"=>"3", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"3"}
• {"unique-ip"=>"10", "full-text"=>"12", "pdf"=>"0", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"4"}
• {"unique-ip"=>"15", "full-text"=>"19", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"5"}
• {"unique-ip"=>"11", "full-text"=>"11", "pdf"=>"2", "scanned-summary"=>"0", "scanned-page-browse"=>"0", "figure"=>"0", "supp-data"=>"0", "cited-by"=>"0", "year"=>"2019", "month"=>"8"}

Relative Metric

{"start_date"=>"2016-01-01T00:00:00Z", "end_date"=>"2016-12-31T00:00:00Z", "subject_areas"=>[]}

F1000Prime